https://launchpad.net/ubuntu/+archive/test-rebuild-20240502-noble-gcc/+build/28314432
RUN: /usr/share/launchpad-buildd/bin/builder-prep 
Kernel version: Linux lcy02-amd64-104 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64
Buildd toolchain package versions: launchpad-buildd_237~660~ubuntu20.04.1 python3-lpbuildd_237~660~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1.
Syncing the system clock with the buildd NTP service...
 9 May 00:10:24 ntpdate[1847]: adjust time server 10.131.248.1 offset 0.000338 sec
RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28314432 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9
Creating target for build PACKAGEBUILD-28314432
RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28314432
Starting target for build PACKAGEBUILD-28314432
RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28314432 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble main' 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble main' 'deb http://ftpmaster.internal/ubuntu noble main restricted universe multiverse'
Overriding sources.list in build-PACKAGEBUILD-28314432
RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28314432
Adding trusted keys to build-PACKAGEBUILD-28314432
pub   rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC]
      Key fingerprint = 60C3 1780 3A41 BA51 845E  371A 1E93 77A2 BA9E F27F
uid                            Launchpad Toolchain builds

RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28314432
Updating target for build PACKAGEBUILD-28314432
Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble InRelease [23.6 kB]
Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble InRelease [23.6 kB]
Get:3 http://ftpmaster.internal/ubuntu noble InRelease [256 kB]
Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 Packages [29.7 kB]
Get:5 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main Translation-en [14.9 kB]
Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 Packages [18.2 kB]
Get:7 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main Translation-en [4996 B]
Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1401 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main Translation-en [513 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/restricted amd64 Packages [93.9 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/restricted Translation-en [18.7 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.0 MB]
Get:13 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5982 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/multiverse amd64 Packages [269 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/multiverse Translation-en [118 kB]
Fetched 23.8 MB in 3s (8711 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages were automatically installed and are no longer required:
  cpp-13 g++-13 g++-13-x86-64-linux-gnu libnsl-dev libperl5.36
  libstdc++-13-dev libtirpc-dev libunistring2 perl-modules-5.36
Use 'sudo apt autoremove' to remove them.
The following packages will be REMOVED:
  libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30*
  libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3*
  libtirpc3* usrmerge*
The following NEW packages will be installed:
  cpp-13-x86-64-linux-gnu cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
  g++-13-x86-64-linux-gnu g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu
  gcc-13-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu
  gcc-x86-64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64
  libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64
  libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64
  libssl3t64 libstdc++-14-dev libtirpc3t64 libunistring5 perl-modules-5.38
The following packages will be upgraded:
  advancecomp apt apt-utils base-files base-passwd bash bash-completion
  binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils
  bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n
  debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13
  gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init
  init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8
  libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils
  libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0
  libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12
  libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl
  libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10
  libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgprofng0
  libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libjansson4
  libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0
  liblocale-gettext-perl liblockfile-bin liblockfile1 liblsan0 liblz4-1
  liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2
  libnss-nis libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin
  libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libquadmath0 libseccomp2
  libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1
  libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6
  libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl
  libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libtsan2 libubsan1
  libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login
  logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl
  optipng passwd patch perl perl-base pinentry-curses procps psmisc
  readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev
  systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux
  uuid-runtime xz-utils zlib1g
177 upgraded, 31 newly installed, 14 to remove and 0 not upgraded.
Need to get 453 MB of archives.
After this operation, 1287 MB of additional disk space will be used.
Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-14-base amd64 14-20240429-1ubuntu1 [48.0 kB]
Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgcc-s1 amd64 14-20240429-1ubuntu1 [78.3 kB]
Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libstdc++6 amd64 14-20240429-1ubuntu1 [794 kB]
Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B]
Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1.1build1 [193 kB]
Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-14-x86-64-linux-gnu amd64 14-20240429-1ubuntu1 [101 MB]
Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3build3 [70.5 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3build3 [41.4 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.1build1 [82.6 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2 [142 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2 [347 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2 [81.7 kB]
Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2 [33.5 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libacl1 amd64 2.3.2-1build1 [16.8 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0-beta3-0ubuntu3 [49.5 kB]
Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.2-2.1build1 [5736 B]
Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.4-2build2 [15.2 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.2-2.1build1 [46.9 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libblkid1 amd64 2.39.3-9ubuntu6 [123 kB]
Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libcap2 amd64 1:2.66-5ubuntu2 [30.0 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4build1 [112 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt1 amd64 1:4.4.36-4build1 [82.3 kB]
Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build2 [8064 B]
Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build2 [70.0 kB]
Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libgcrypt20 amd64 1.10.3-2build1 [532 kB]
Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.6.1+really5.4.5-1 [127 kB]
Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2build1 [299 kB]
Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libkmod2 amd64 31+20240202-2ubuntu7 [51.7 kB]
Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 liblz4-1 amd64 1.9.4-1build1 [63.0 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu2 [227 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-2ubuntu2 [79.6 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libmount1 amd64 2.39.3-9ubuntu6 [134 kB]
Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB]
Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-7 [734 kB]
Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm6t64 amd64 1.23-5.1build1 [34.4 kB]
Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm-compat4t64 amd64 1.23-5.1build1 [6710 B]
Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libperl5.38t64 amd64 5.38.2-3.2build2 [4873 kB]
Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 perl amd64 5.38.2-3.2build2 [231 kB]
Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 perl-base amd64 5.38.2-3.2build2 [1823 kB]
Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 liblocale-gettext-perl amd64 1.07-6ubuntu5 [15.8 kB]
Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-iconv-perl amd64 1.7-8build3 [13.5 kB]
Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libtext-charwidth-perl amd64 0.04-11build3 [9358 B]
Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 libnss-nisplus amd64 1.3-5build1 [22.4 kB]
Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 libnss-nis amd64 3.1-0ubuntu7 [26.5 kB]
Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu8 [20.4 kB]
Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu7 [67.4 kB]
Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu8 [2124 kB]
Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu8 [3265 kB]
Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu8 [682 kB]
Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.13-0ubuntu3 [1002 kB]
Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd-shared amd64 255.4-1ubuntu8 [2067 kB]
Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libcryptsetup12 amd64 2:2.7.0-1ubuntu4 [266 kB]
Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3t64 amd64 3.0.13-0ubuntu3 [1936 kB]
Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-dev all 255.4-1ubuntu8 [104 kB]
Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 systemd-sysv amd64 255.4-1ubuntu8 [11.9 kB]
Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 systemd amd64 255.4-1ubuntu8 [3471 kB]
Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libsystemd0 amd64 255.4-1ubuntu8 [429 kB]
Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.3-5ubuntu5 [51.9 kB]
Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.3-5ubuntu5 [279 kB]
Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libnettle8t64 amd64 3.9.1-2.2build1 [182 kB]
Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libhogweed6t64 amd64 3.9.1-2.2build1 [199 kB]
Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-4ubuntu2 [299 kB]
Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2build1 [535 kB]
Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30t64 amd64 3.8.3-1.1ubuntu3 [998 kB]
Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libapt-pkg6.0t64 amd64 2.7.14build2 [985 kB]
Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 bzip2 amd64 1.0.8-5.1 [34.5 kB]
Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-1.0 amd64 1.0.8-5.1 [34.3 kB]
Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libudev1 amd64 255.4-1ubuntu8 [174 kB]
Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2build1 [24.1 kB]
Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g amd64 1:1.3.dfsg-3.1ubuntu2 [62.8 kB]
Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libgmp10 amd64 2:6.3.0+dfsg-2ubuntu6 [253 kB]
Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.6-1build1 [24.7 kB]
Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.7-2build1 [66.2 kB]
Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libtasn1-6 amd64 4.19.0-3build1 [43.9 kB]
Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libdebconfclient0 amd64 0.271ubuntu3 [11.4 kB]
Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3build1 [51.1 kB]
Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libassuan0 amd64 2.5.6-1build1 [37.3 kB]
Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libsqlite3-0 amd64 3.45.1-1ubuntu2 [701 kB]
Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 gpg amd64 2.4.4-2ubuntu17 [565 kB]
Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline8t64 amd64 8.2-4build1 [153 kB]
Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 readline-common all 8.2-4build1 [56.5 kB]
Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20240113-1ubuntu2 [148 kB]
Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20240113-1ubuntu2 [108 kB]
Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 gpg-agent amd64 2.4.4-2ubuntu17 [227 kB]
Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 gpgconf amd64 2.4.4-2ubuntu17 [103 kB]
Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu5 [35.2 kB]
Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB]
Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libnpth0t64 amd64 1.6-3.1build1 [8378 B]
Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 gpgv amd64 2.4.4-2ubuntu17 [157 kB]
Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB]
Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libseccomp2 amd64 2.5.5-1ubuntu3 [50.3 kB]
Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 apt-utils amd64 2.7.14build2 [217 kB]
Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 apt amd64 2.7.14build2 [1375 kB]
Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 debconf-i18n all 1.5.86ubuntu1 [205 kB]
Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 debconf all 1.5.86ubuntu1 [124 kB]
Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.3-5ubuntu5 [67.7 kB]
Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4build1 [20.8 kB]
Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-3ubuntu3 [139 kB]
Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libjson-c5 amd64 0.17-1build1 [35.3 kB]
Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libuuid1 amd64 2.39.3-9ubuntu6 [35.2 kB]
Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libfdisk1 amd64 2.39.3-9ubuntu6 [146 kB]
Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 mount amd64 2.39.3-9ubuntu6 [118 kB]
Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libcom-err2 amd64 1.47.0-2.4~exp1ubuntu4 [22.8 kB]
Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B]
Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-31.31 [1598 kB]
Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu10 [73.6 kB]
Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.17build1 [89.9 kB]
Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB]
Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 bsdutils amd64 1:2.39.3-9ubuntu6 [95.0 kB]
Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 coreutils amd64 9.4-3ubuntu6 [1412 kB]
Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.35+dfsg-3build1 [253 kB]
Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.6ubuntu6 [1283 kB]
Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 dash amd64 0.5.12-6ubuntu5 [89.8 kB]
Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1build1 [177 kB]
Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 findutils amd64 4.9.0-5build1 [298 kB]
Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-4build1 [162 kB]
Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 gzip amd64 1.12-1ubuntu3 [98.8 kB]
Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 hostname amd64 3.23+nmu2ubuntu2 [11.1 kB]
Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-4ubuntu3 [202 kB]
Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20240113-1ubuntu2 [188 kB]
Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 sed amd64 4.9-2build1 [193 kB]
Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 util-linux amd64 2.39.3-9ubuntu6 [1127 kB]
Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB]
Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-6ubuntu3 [34.2 kB]
Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 logsave amd64 1.47.0-2.4~exp1ubuntu4 [22.5 kB]
Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 libext2fs2t64 amd64 1.47.0-2.4~exp1ubuntu4 [222 kB]
Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 e2fsprogs amd64 1.47.0-2.4~exp1ubuntu4 [601 kB]
Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.8+ds-1build2 [110 kB]
Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16t64 amd64 1.6.43-5build1 [187 kB]
Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 init amd64 1.66ubuntu1 [6186 B]
Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libsmartcols1 amd64 2.39.3-9ubuntu6 [64.8 kB]
Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 uuid-runtime amd64 2.39.3-9ubuntu6 [33.1 kB]
Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libattr1 amd64 1:2.5.2-1build1 [11.3 kB]
Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 libmd0 amd64 1.1.0-2build1 [27.0 kB]
Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB]
Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build5 [10.1 kB]
Get:137 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2build1 [303 kB]
Get:138 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build5 [93.2 kB]
Get:139 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-4ubuntu3 [845 kB]
Get:140 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-4ubuntu3 [59.1 kB]
Get:141 http://ftpmaster.internal/ubuntu noble/main amd64 libss2 amd64 1.47.0-2.4~exp1ubuntu4 [17.0 kB]
Get:142 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20240123-1build1 [127 kB]
Get:143 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-4ubuntu3 [708 kB]
Get:144 http://ftpmaster.internal/ubuntu noble/main amd64 sensible-utils all 0.0.22 [22.5 kB]
Get:145 http://ftpmaster.internal/ubuntu noble/main amd64 ca-certificates all 20240203 [159 kB]
Get:146 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB]
Get:147 http://ftpmaster.internal/ubuntu noble/main amd64 tzdata all 2024a-2ubuntu1 [273 kB]
Get:148 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB]
Get:149 http://ftpmaster.internal/ubuntu noble/main amd64 bsdextrautils amd64 2.39.3-9ubuntu6 [73.8 kB]
Get:150 http://ftpmaster.internal/ubuntu noble/main amd64 libgpm2 amd64 1.20.7-11 [14.1 kB]
Get:151 http://ftpmaster.internal/ubuntu noble/main amd64 libip4tc2 amd64 1.8.10-3ubuntu2 [23.3 kB]
Get:152 http://ftpmaster.internal/ubuntu noble/main amd64 libjansson4 amd64 2.14-2build2 [32.8 kB]
Get:153 http://ftpmaster.internal/ubuntu noble/main amd64 psmisc amd64 23.7-1build1 [179 kB]
Get:154 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.6.1+really5.4.5-1 [267 kB]
Get:155 http://ftpmaster.internal/ubuntu noble/main amd64 advancecomp amd64 2.5-1build1 [182 kB]
Get:156 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.42-4ubuntu2 [851 kB]
Get:157 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.42-4ubuntu2 [94.5 kB]
Get:158 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.42-4ubuntu2 [97.1 kB]
Get:159 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.42-4ubuntu2 [2469 kB]
Get:160 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.42-4ubuntu2 [572 kB]
Get:161 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.42-4ubuntu2 [18.0 kB]
Get:162 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.42-4ubuntu2 [239 kB]
Get:163 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.42-4ubuntu2 [14.8 kB]
Get:164 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3build1 [680 kB]
Get:165 http://ftpmaster.internal/ubuntu noble/main amd64 libmpfr6 amd64 4.2.1-1build1 [355 kB]
Get:166 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB]
Get:167 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.6ubuntu6 [1074 kB]
Get:168 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.6ubuntu6 [268 kB]
Get:169 http://ftpmaster.internal/ubuntu noble/main amd64 patch amd64 2.7.6-7build3 [104 kB]
Get:170 http://ftpmaster.internal/ubuntu noble/main amd64 make amd64 4.3-4.1build2 [180 kB]
Get:171 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 47 [12.4 kB]
Get:172 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.33-1 [32.4 kB]
Get:173 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.33-1 [67.2 kB]
Get:174 http://ftpmaster.internal/ubuntu noble/main amd64 liblockfile-bin amd64 1.17-1build3 [11.2 kB]
Get:175 http://ftpmaster.internal/ubuntu noble/main amd64 liblockfile1 amd64 1.17-1build3 [6840 B]
Get:176 http://ftpmaster.internal/ubuntu noble/main amd64 lockfile-progs amd64 0.1.19build2 [8522 B]
Get:177 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 g++ amd64 4:14-20240120-6ubuntu1 [1102 B]
Get:178 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 gcc amd64 4:14-20240120-6ubuntu1 [5002 B]
Get:179 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 cpp amd64 4:14-20240120-6ubuntu1 [22.5 kB]
Get:180 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:14-20240120-6ubuntu1 [5372 B]
Get:181 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libcc1-0 amd64 14-20240429-1ubuntu1 [47.7 kB]
Get:182 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgomp1 amd64 14-20240429-1ubuntu1 [148 kB]
Get:183 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libitm1 amd64 14-20240429-1ubuntu1 [28.9 kB]
Get:184 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libatomic1 amd64 14-20240429-1ubuntu1 [10.4 kB]
Get:185 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libasan8 amd64 14-20240429-1ubuntu1 [3025 kB]
Get:186 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 liblsan0 amd64 14-20240429-1ubuntu1 [1313 kB]
Get:187 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-13 amd64 13.2.0-24ubuntu1 [15.0 kB]
Get:188 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-24ubuntu1 [484 kB]
Get:189 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-24ubuntu1 [1032 B]
Get:190 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-24ubuntu1 [11.2 MB]
Get:191 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libubsan1 amd64 14-20240429-1ubuntu1 [1175 kB]
Get:192 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-24ubuntu1 [2400 kB]
Get:193 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libquadmath0 amd64 14-20240429-1ubuntu1 [153 kB]
Get:194 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libhwasan0 amd64 14-20240429-1ubuntu1 [1632 kB]
Get:195 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-24ubuntu1 [2688 kB]
Get:196 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libtsan2 amd64 14-20240429-1ubuntu1 [2735 kB]
Get:197 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-24ubuntu1 [49.3 kB]
Get:198 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-24ubuntu1 [21.9 MB]
Get:199 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-24ubuntu1 [12.5 MB]
Get:200 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libgcc-14-dev amd64 14-20240429-1ubuntu1 [2827 kB]
Get:201 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-14-x86-64-linux-gnu amd64 14-20240429-1ubuntu1 [114 MB]
Get:202 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 libstdc++-14-dev amd64 14-20240429-1ubuntu1 [2483 kB]
Get:203 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-14-x86-64-linux-gnu amd64 14-20240429-1ubuntu1 [110 MB]
Get:204 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 gcc-14 amd64 14-20240429-1ubuntu1 [488 kB]
Get:205 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 g++-14 amd64 14-20240429-1ubuntu1 [15.4 kB]
Get:206 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:14-20240120-6ubuntu1 [1224 B]
Get:207 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:14-20240120-6ubuntu1 [972 B]
Get:208 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/ppa/ubuntu noble/main amd64 cpp-14 amd64 14-20240429-1ubuntu1 [1038 B]
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Current default time zone: 'Etc/UTC'
Local time is now:      Thu May  9 00:11:07 UTC 2024.
Universal Time is now:  Thu May  9 00:11:07 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up fakeroot (1.33-1) ...
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Setting up gcc-13-base:amd64 (13.2.0-24ubuntu1) ...
Setting up make (4.3-4.1build2) ...
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Setting up bash-completion (1:2.11-8) ...
Setting up xz-utils (5.6.1+really5.4.5-1) ...
Setting up perl-modules-5.38 (5.38.2-3.2build2) ...
Setting up libquadmath0:amd64 (14-20240429-1ubuntu1) ...
Setting up libproc2-0:amd64 (2:4.0.4-4ubuntu3) ...
Setting up libpng16-16t64:amd64 (1.6.43-5build1) ...
Setting up libmpc3:amd64 (1.3.1-1build1) ...
Setting up libatomic1:amd64 (14-20240429-1ubuntu1) ...
Setting up patch (2.7.6-7build3) ...
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Setting up libncursesw6:amd64 (6.4+20240113-1ubuntu2) ...
Setting up libk5crypto3:amd64 (1.20.1-6ubuntu2) ...
Setting up logsave (1.47.0-2.4~exp1ubuntu4) ...
Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-7) ...
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Setting up advancecomp (2.5-1build1) ...
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Running in chroot, ignoring request.
invoke-rc.d: policy-rc.d denied execution of restart.
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Installing new version of config file /etc/sysctl.conf ...
Setting up mawk (1.3.4.20240123-1build1) ...
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Setting up liblockfile1:amd64 (1.17-1build3) ...
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Setting up liblocale-gettext-perl (1.07-6ubuntu5) ...
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Setting up apt-utils (2.7.14build2) ...
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Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL
14 added, 5 removed; done.
Setting up perl (5.38.2-3.2build2) ...
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Setting up libc6-dev:amd64 (2.39-0ubuntu8) ...
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Setting up libtirpc3t64:amd64 (1.3.4+ds-1.1build1) ...
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Setting up dpkg-dev (1.22.6ubuntu6) ...
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Setting up gcc-13 (13.2.0-24ubuntu1) ...
Setting up cpp (4:14-20240120-6ubuntu1) ...
Setting up libnsl2:amd64 (1.3.0-3build3) ...
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Setting up gcc-x86-64-linux-gnu (4:14-20240120-6ubuntu1) ...
Setting up libnss-nisplus:amd64 (1.3-5build1) ...
Setting up gcc-14 (14-20240429-1ubuntu1) ...
Setting up libnss-nis:amd64 (3.1-0ubuntu7) ...
Setting up g++-14-x86-64-linux-gnu (14-20240429-1ubuntu1) ...
Setting up libnsl-dev:amd64 (1.3.0-3build3) ...
Setting up g++-x86-64-linux-gnu (4:14-20240120-6ubuntu1) ...
Setting up g++-14 (14-20240429-1ubuntu1) ...
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Setting up gcc (4:14-20240120-6ubuntu1) ...
Setting up g++ (4:14-20240120-6ubuntu1) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...
Processing triggers for debianutils (5.17build1) ...
(Reading database ... 16964 files and directories currently installed.)
Purging configuration files for libssl3:amd64 (3.0.10-1ubuntu2) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28314432 amd64 noble -c chroot:build-PACKAGEBUILD-28314432 --arch=amd64 --dist=noble --nolog -A gmap_2024-02-22+ds-1build1.dsc
Initiating build PACKAGEBUILD-28314432 with 4 jobs across 4 processor cores.
Kernel reported to sbuild: 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 x86_64
sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-104.buildd

+==============================================================================+
| gmap 2024-02-22+ds-1build1 (amd64)           Thu, 09 May 2024 00:11:11 +0000 |
+==============================================================================+

Package: gmap
Version: 2024-02-22+ds-1build1
Source Version: 2024-02-22+ds-1build1
Distribution: noble
Machine Architecture: amd64
Host Architecture: amd64
Build Architecture: amd64
Build Type: binary

I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28314432/chroot-autobuild' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/gmap-g0HeK6/resolver-UznNoC' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

gmap_2024-02-22+ds-1build1.dsc exists in .; copying to chroot
I: NOTICE: Log filtering will replace 'build/gmap-g0HeK6/gmap-2024-02-22+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/gmap-g0HeK6' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, zlib1g-dev, debhelper, libsimde-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, zlib1g-dev, debhelper, libsimde-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [399 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [479 B]
Fetched 1835 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  apt-utils bash-completion ca-certificates cpp-13 debconf-i18n g++-13
  g++-13-x86-64-linux-gnu krb5-locales libgpg-error-l10n libgpm2
  libgssapi-krb5-2 libip4tc2 libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36
  libstdc++-13-dev libtext-charwidth-perl libtext-iconv-perl
  libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64
  libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man
  intltool-debian libarchive-zip-perl libbz2-dev libdebhelper-perl libdw1t64
  libelf1t64 libfile-stripnondeterminism-perl libicu74 libmagic-mgc
  libmagic1t64 libpipeline1 libsimde-dev libsub-override-perl libtool
  libuchardet0 libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
  | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx bzip2-doc libarchive-cpio-perl libltdl-dev
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf
  dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man
  intltool-debian libarchive-zip-perl libbz2-dev libdebhelper-perl libdw1t64
  libelf1t64 libfile-stripnondeterminism-perl libicu74 libmagic-mgc
  libmagic1t64 libpipeline1 libsimde-dev libsub-override-perl libtool
  libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy
  zlib1g-dev
0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded.
Need to get 20.3 MB of archives.
After this operation, 74.5 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [696 B]
Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libelf1t64 amd64 0.190-1.1build4 [57.6 kB]
Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libicu74 amd64 74.2-1ubuntu3 [10.9 MB]
Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libxml2 amd64 2.9.14+dfsg-1.3ubuntu3 [762 kB]
Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic-mgc amd64 1:5.45-3build1 [307 kB]
Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libmagic1t64 amd64 1:5.45-3build1 [87.2 kB]
Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 file amd64 1:5.45-3build1 [22.0 kB]
Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 gettext-base amd64 0.21-14ubuntu2 [38.4 kB]
Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libuchardet0 amd64 0.0.8-1build1 [75.3 kB]
Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 groff-base amd64 1.23.0-3build2 [1020 kB]
Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libpipeline1 amd64 1.5.7-2 [23.6 kB]
Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 man-db amd64 2.12.0-4build2 [1237 kB]
Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4build1 [244 kB]
Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB]
Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB]
Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 autopoint all 0.21-14ubuntu2 [422 kB]
Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB]
Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libtool all 2.4.7-7build1 [166 kB]
Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 dh-autoreconf all 20 [16.1 kB]
Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libsub-override-perl all 0.10-1 [10.0 kB]
Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB]
Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 dh-strip-nondeterminism all 1.13.1-1 [5362 B]
Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libdw1t64 amd64 0.190-1.1build4 [261 kB]
Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 debugedit amd64 1:5.0-5build2 [46.1 kB]
Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 dwz amd64 0.15-1build6 [115 kB]
Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gettext amd64 0.21-14ubuntu2 [864 kB]
Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 debhelper all 13.14.1ubuntu5 [869 kB]
Get:32 http://ftpmaster.internal/ubuntu noble/universe amd64 help2man amd64 1.49.3 [201 kB]
Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5.1 [33.6 kB]
Get:34 http://ftpmaster.internal/ubuntu noble/universe amd64 libsimde-dev all 0.7.2-6 [261 kB]
Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB]
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Setting up libxml2:amd64 (2.9.14+dfsg-1.3ubuntu3) ...
Setting up libbz2-dev:amd64 (1.0.8-5.1) ...
Setting up automake (1:1.16.5-1.3ubuntu1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up gettext (0.21-14ubuntu2) ...
Setting up libtool (2.4.7-7build1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up groff-base (1.23.0-3build2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.12.0-4build2) ...
Not building database; man-db/auto-update is not 'true'.
Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer.
Setting up debhelper (13.14.1ubuntu5) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.39-0ubuntu8) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (amd64 included in amd64 arm64 armel armhf i386 loong64 mips64el mipsel ppc64el riscv64)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 5.4.0-177-generic #197-Ubuntu SMP Thu Mar 28 22:45:47 UTC 2024 amd64 (x86_64)
Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-24ubuntu1 g++-14_14-20240429-1ubuntu1 gcc-13_13.2.0-24ubuntu1 gcc-14_14-20240429-1ubuntu1 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-24ubuntu1 libstdc++-14-dev_14-20240429-1ubuntu1 libstdc++6_14-20240429-1ubuntu1 linux-libc-dev_6.8.0-31.31
Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu10 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-x86-64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 coreutils_9.4-3ubuntu6 cpp_4:14-20240120-6ubuntu1 cpp-13_13.2.0-24ubuntu1 cpp-13-x86-64-linux-gnu_13.2.0-24ubuntu1 cpp-14_14-20240429-1ubuntu1 cpp-14-x86-64-linux-gnu_14-20240429-1ubuntu1 cpp-x86-64-linux-gnu_4:14-20240120-6ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1 file_1:5.45-3build1 findutils_4.9.0-5build1 g++_4:14-20240120-6ubuntu1 g++-13_13.2.0-24ubuntu1 g++-13-x86-64-linux-gnu_13.2.0-24ubuntu1 g++-14_14-20240429-1ubuntu1 g++-14-x86-64-linux-gnu_14-20240429-1ubuntu1 g++-x86-64-linux-gnu_4:14-20240120-6ubuntu1 gcc_4:14-20240120-6ubuntu1 gcc-13_13.2.0-24ubuntu1 gcc-13-base_13.2.0-24ubuntu1 gcc-13-x86-64-linux-gnu_13.2.0-24ubuntu1 gcc-14_14-20240429-1ubuntu1 gcc-14-base_14-20240429-1ubuntu1 gcc-14-x86-64-linux-gnu_14-20240429-1ubuntu1 gcc-x86-64-linux-gnu_4:14-20240120-6ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 help2man_1.49.3 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240429-1ubuntu1 libassuan0_2.5.6-1build1 libatomic1_14-20240429-1ubuntu1 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblkid1_2.39.3-9ubuntu6 libbz2-1.0_1.0.8-5.1 libbz2-dev_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcc1-0_14-20240429-1ubuntu1 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build4 libelf1t64_0.190-1.1build4 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfakeroot_1.33-1 libfdisk1_2.39.3-9ubuntu6 libffi8_3.4.6-1build1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-24ubuntu1 libgcc-14-dev_14-20240429-1ubuntu1 libgcc-s1_14-20240429-1ubuntu1 libgcrypt20_1.10.3-2build1 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgmp10_2:6.3.0+dfsg-2ubuntu6 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240429-1ubuntu1 libgpg-error-l10n_1.47-3build2 libgpg-error0_1.47-3build2 libgpm2_1.20.7-11 libgprofng0_2.42-4ubuntu2 libgssapi-krb5-2_1.20.1-6ubuntu2 libhogweed6t64_3.9.1-2.2build1 libhwasan0_14-20240429-1ubuntu1 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libitm1_14-20240429-1ubuntu1 libjansson4_2.14-2build2 libjson-c5_0.17-1build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libkmod2_31+20240202-2ubuntu7 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 liblsan0_14-20240429-1ubuntu1 liblz4-1_1.9.4-1build1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu6 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu7 libnss-nisplus_1.3-5build1 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-5ubuntu5 libpam-modules-bin_1.5.3-5ubuntu5 libpam-runtime_1.5.3-5ubuntu5 libpam0g_1.5.3-5ubuntu5 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build2 libpipeline1_1.5.7-2 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libquadmath0_14-20240429-1ubuntu1 libreadline8t64_8.2-4build1 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsimde-dev_0.7.2-6 libsmartcols1_2.39.3-9ubuntu6 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu4 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-24ubuntu1 libstdc++-14-dev_14-20240429-1ubuntu1 libstdc++6_14-20240429-1ubuntu1 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu8 libsystemd0_255.4-1ubuntu8 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7build1 libtsan2_14-20240429-1ubuntu1 libubsan1_14-20240429-1ubuntu1 libuchardet0_0.0.8-1build1 libudev1_255.4-1ubuntu8 libunistring2_1.0-2 libunistring5_1.1-2build1 libuuid1_2.39.3-9ubuntu6 libxml2_2.9.14+dfsg-1.3ubuntu3 libxxhash0_0.8.2-2build1 libzstd1_1.5.5+dfsg2-2build1 linux-libc-dev_6.8.0-31.31 lockfile-progs_0.1.19build2 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 mount_2.39.3-9ubuntu6 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 systemd_255.4-1ubuntu8 systemd-dev_255.4-1ubuntu8 systemd-sysv_255.4-1ubuntu8 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: gmap
Binary: gmap
Architecture: amd64 arm64 armel armhf i386 loong64 mips64el mipsel ppc64el riscv64
Version: 2024-02-22+ds-1build1
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Uploaders: Shaun Jackman <sjackman@debian.org>, Andreas Tille <tille@debian.org>, Alexandre Mestiashvili <mestia@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: http://research-pub.gene.com/gmap
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/gmap
Vcs-Git: https://salsa.debian.org/med-team/gmap.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), help2man, libbz2-dev, zlib1g-dev, debhelper, libsimde-dev
Package-List:
 gmap deb science optional arch=amd64,arm64,armel,armhf,i386,loong64,mips64el,mipsel,ppc64el,riscv64
Checksums-Sha1:
 45ab826c77d8481189f0a243703f8893aeff3b89 2459216 gmap_2024-02-22+ds.orig.tar.xz
 8c9c69e0be545bd597dbbb46930968287f1a00ba 13332 gmap_2024-02-22+ds-1build1.debian.tar.xz
Checksums-Sha256:
 5e700517f07b3447a0c38c60417fe8abbc8e2797da478db7d1e20cbd793858a8 2459216 gmap_2024-02-22+ds.orig.tar.xz
 a82409c7cbb8c07dd1a2120a99174ee7e6a4b09d9f5fddad4d91d6dbc47f4cdd 13332 gmap_2024-02-22+ds-1build1.debian.tar.xz
Files:
 2faffbff71a1065d632ff5edb0a53574 2459216 gmap_2024-02-22+ds.orig.tar.xz
 b403bfd1f082dfc47bfd9fdbe5eeb090 13332 gmap_2024-02-22+ds-1build1.debian.tar.xz
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

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gpgv: Signature made Sun Mar 31 06:01:05 2024 UTC
gpgv:                using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
gpgv:                issuer "steve.langasek@ubuntu.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./gmap_2024-02-22+ds-1build1.dsc: no acceptable signature found
dpkg-source: info: extracting gmap in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking gmap_2024-02-22+ds.orig.tar.xz
dpkg-source: info: unpacking gmap_2024-02-22+ds-1build1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying install-data-local
dpkg-source: info: applying remove_getopt_code_copy.patch
dpkg-source: info: applying simd_fixes

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=noautodbgsym parallel=4
HOME=/sbuild-nonexistent
LANG=C.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28314432
SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28314432
SCHROOT_COMMAND=env
SCHROOT_GID=2501
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=build-PACKAGEBUILD-28314432
SCHROOT_UID=2001
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=unknown
USER=buildd
V=1

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon <buildd@lcy02-amd64-104.buildd> -b -rfakeroot
dpkg-buildpackage: info: source package gmap
dpkg-buildpackage: info: source version 2024-02-22+ds-1build1
dpkg-buildpackage: info: source distribution noble
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh  clean --builddir build
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean --builddir build_avx512
dh_auto_clean --builddir build_avx2
dh_auto_clean --builddir build_sse42
dh_auto_clean --builddir build_sse41
dh_auto_clean --builddir build_ssse3
dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--builddir=build
   dh_clean -O--builddir=build
 debian/rules binary
dh  binary --builddir build
   dh_update_autotools_config -O--builddir=build
   dh_autoreconf -O--builddir=build
configure.ac:104: installing 'config/compile'
configure.ac:85: installing 'config/config.guess'
configure.ac:85: installing 'config/config.sub'
configure.ac:109: installing 'config/install-sh'
configure.ac:109: installing 'config/missing'
Makefile.am: installing './INSTALL'
src/Makefile.am: installing 'config/depcomp'
src/Makefile.am:862: warning: variable 'dist_compare2truth_SOURCES' is defined but no program or
src/Makefile.am:862: library has 'compare2truth' as canonical name (possible typo)
src/Makefile.am:1208: warning: variable 'dist_gcount_bulk_SOURCES' is defined but no program or
src/Makefile.am:1208: library has 'gcount_bulk' as canonical name (possible typo)
src/Makefile.am:1234: warning: variable 'dist_gcount_sc_SOURCES' is defined but no program or
src/Makefile.am:1234: library has 'gcount_sc' as canonical name (possible typo)
src/Makefile.am:216: warning: variable 'dist_gexact_SOURCES' is defined but no program or
src/Makefile.am:216: library has 'gexact' as canonical name (possible typo)
src/Makefile.am:734: warning: variable 'dist_gexact_arm_SOURCES' is defined but no program or
src/Makefile.am:734: library has 'gexact_arm' as canonical name (possible typo)
src/Makefile.am:764: warning: variable 'dist_gexact_avx2_SOURCES' is defined but no program or
src/Makefile.am:764: library has 'gexact_avx2' as canonical name (possible typo)
src/Makefile.am:770: warning: variable 'dist_gexact_avx512_SOURCES' is defined but no program or
src/Makefile.am:770: library has 'gexact_avx512' as canonical name (possible typo)
src/Makefile.am:776: warning: variable 'dist_gexact_avx512bw_SOURCES' is defined but no program or
src/Makefile.am:776: library has 'gexact_avx512bw' as canonical name (possible typo)
src/Makefile.am:728: warning: variable 'dist_gexact_nosimd_SOURCES' is defined but no program or
src/Makefile.am:728: library has 'gexact_nosimd' as canonical name (possible typo)
src/Makefile.am:740: warning: variable 'dist_gexact_sse2_SOURCES' is defined but no program or
src/Makefile.am:740: library has 'gexact_sse2' as canonical name (possible typo)
src/Makefile.am:752: warning: variable 'dist_gexact_sse41_SOURCES' is defined but no program or
src/Makefile.am:752: library has 'gexact_sse41' as canonical name (possible typo)
src/Makefile.am:758: warning: variable 'dist_gexact_sse42_SOURCES' is defined but no program or
src/Makefile.am:758: library has 'gexact_sse42' as canonical name (possible typo)
src/Makefile.am:746: warning: variable 'dist_gexact_ssse3_SOURCES' is defined but no program or
src/Makefile.am:746: library has 'gexact_ssse3' as canonical name (possible typo)
src/Makefile.am:223: warning: variable 'dist_gfilter_SOURCES' is defined but no program or
src/Makefile.am:223: library has 'gfilter' as canonical name (possible typo)
src/Makefile.am:808: warning: variable 'dist_gfilter_arm_SOURCES' is defined but no program or
src/Makefile.am:808: library has 'gfilter_arm' as canonical name (possible typo)
src/Makefile.am:838: warning: variable 'dist_gfilter_avx2_SOURCES' is defined but no program or
src/Makefile.am:838: library has 'gfilter_avx2' as canonical name (possible typo)
src/Makefile.am:844: warning: variable 'dist_gfilter_avx512_SOURCES' is defined but no program or
src/Makefile.am:844: library has 'gfilter_avx512' as canonical name (possible typo)
src/Makefile.am:850: warning: variable 'dist_gfilter_avx512bw_SOURCES' is defined but no program or
src/Makefile.am:850: library has 'gfilter_avx512bw' as canonical name (possible typo)
src/Makefile.am:802: warning: variable 'dist_gfilter_nosimd_SOURCES' is defined but no program or
src/Makefile.am:802: library has 'gfilter_nosimd' as canonical name (possible typo)
src/Makefile.am:814: warning: variable 'dist_gfilter_sse2_SOURCES' is defined but no program or
src/Makefile.am:814: library has 'gfilter_sse2' as canonical name (possible typo)
src/Makefile.am:826: warning: variable 'dist_gfilter_sse41_SOURCES' is defined but no program or
src/Makefile.am:826: library has 'gfilter_sse41' as canonical name (possible typo)
src/Makefile.am:832: warning: variable 'dist_gfilter_sse42_SOURCES' is defined but no program or
src/Makefile.am:832: library has 'gfilter_sse42' as canonical name (possible typo)
src/Makefile.am:820: warning: variable 'dist_gfilter_ssse3_SOURCES' is defined but no program or
src/Makefile.am:820: library has 'gfilter_ssse3' as canonical name (possible typo)
src/Makefile.am:1124: warning: variable 'dist_iit_pileup_SOURCES' is defined but no program or
src/Makefile.am:1124: library has 'iit_pileup' as canonical name (possible typo)
src/Makefile.am:1146: warning: variable 'dist_sam_sort_SOURCES' is defined but no program or
src/Makefile.am:1146: library has 'sam_sort' as canonical name (possible typo)
src/Makefile.am:1164: warning: variable 'dist_umi_correct_SOURCES' is defined but no program or
src/Makefile.am:1164: library has 'umi_correct' as canonical name (possible typo)
src/Makefile.am:1183: warning: variable 'dist_velocity_counts_SOURCES' is defined but no program or
src/Makefile.am:1183: library has 'velocity_counts' as canonical name (possible typo)
src/Makefile.am:861: warning: variable 'compare2truth_LDADD' is defined but no program or
src/Makefile.am:861: library has 'compare2truth' as canonical name (possible typo)
src/Makefile.am:1207: warning: variable 'gcount_bulk_LDADD' is defined but no program or
src/Makefile.am:1207: library has 'gcount_bulk' as canonical name (possible typo)
src/Makefile.am:1233: warning: variable 'gcount_sc_LDADD' is defined but no program or
src/Makefile.am:1233: library has 'gcount_sc' as canonical name (possible typo)
src/Makefile.am:215: warning: variable 'gexact_LDADD' is defined but no program or
src/Makefile.am:215: library has 'gexact' as canonical name (possible typo)
src/Makefile.am:733: warning: variable 'gexact_arm_LDADD' is defined but no program or
src/Makefile.am:733: library has 'gexact_arm' as canonical name (possible typo)
src/Makefile.am:763: warning: variable 'gexact_avx2_LDADD' is defined but no program or
src/Makefile.am:763: library has 'gexact_avx2' as canonical name (possible typo)
src/Makefile.am:769: warning: variable 'gexact_avx512_LDADD' is defined but no program or
src/Makefile.am:769: library has 'gexact_avx512' as canonical name (possible typo)
src/Makefile.am:775: warning: variable 'gexact_avx512bw_LDADD' is defined but no program or
src/Makefile.am:775: library has 'gexact_avx512bw' as canonical name (possible typo)
src/Makefile.am:727: warning: variable 'gexact_nosimd_LDADD' is defined but no program or
src/Makefile.am:727: library has 'gexact_nosimd' as canonical name (possible typo)
src/Makefile.am:739: warning: variable 'gexact_sse2_LDADD' is defined but no program or
src/Makefile.am:739: library has 'gexact_sse2' as canonical name (possible typo)
src/Makefile.am:751: warning: variable 'gexact_sse41_LDADD' is defined but no program or
src/Makefile.am:751: library has 'gexact_sse41' as canonical name (possible typo)
src/Makefile.am:757: warning: variable 'gexact_sse42_LDADD' is defined but no program or
src/Makefile.am:757: library has 'gexact_sse42' as canonical name (possible typo)
src/Makefile.am:745: warning: variable 'gexact_ssse3_LDADD' is defined but no program or
src/Makefile.am:745: library has 'gexact_ssse3' as canonical name (possible typo)
src/Makefile.am:222: warning: variable 'gfilter_LDADD' is defined but no program or
src/Makefile.am:222: library has 'gfilter' as canonical name (possible typo)
src/Makefile.am:807: warning: variable 'gfilter_arm_LDADD' is defined but no program or
src/Makefile.am:807: library has 'gfilter_arm' as canonical name (possible typo)
src/Makefile.am:837: warning: variable 'gfilter_avx2_LDADD' is defined but no program or
src/Makefile.am:837: library has 'gfilter_avx2' as canonical name (possible typo)
src/Makefile.am:843: warning: variable 'gfilter_avx512_LDADD' is defined but no program or
src/Makefile.am:843: library has 'gfilter_avx512' as canonical name (possible typo)
src/Makefile.am:849: warning: variable 'gfilter_avx512bw_LDADD' is defined but no program or
src/Makefile.am:849: library has 'gfilter_avx512bw' as canonical name (possible typo)
src/Makefile.am:801: warning: variable 'gfilter_nosimd_LDADD' is defined but no program or
src/Makefile.am:801: library has 'gfilter_nosimd' as canonical name (possible typo)
src/Makefile.am:813: warning: variable 'gfilter_sse2_LDADD' is defined but no program or
src/Makefile.am:813: library has 'gfilter_sse2' as canonical name (possible typo)
src/Makefile.am:825: warning: variable 'gfilter_sse41_LDADD' is defined but no program or
src/Makefile.am:825: library has 'gfilter_sse41' as canonical name (possible typo)
src/Makefile.am:831: warning: variable 'gfilter_sse42_LDADD' is defined but no program or
src/Makefile.am:831: library has 'gfilter_sse42' as canonical name (possible typo)
src/Makefile.am:819: warning: variable 'gfilter_ssse3_LDADD' is defined but no program or
src/Makefile.am:819: library has 'gfilter_ssse3' as canonical name (possible typo)
src/Makefile.am:1123: warning: variable 'iit_pileup_LDADD' is defined but no program or
src/Makefile.am:1123: library has 'iit_pileup' as canonical name (possible typo)
src/Makefile.am:1145: warning: variable 'sam_sort_LDADD' is defined but no program or
src/Makefile.am:1145: library has 'sam_sort' as canonical name (possible typo)
src/Makefile.am:1163: warning: variable 'umi_correct_LDADD' is defined but no program or
src/Makefile.am:1163: library has 'umi_correct' as canonical name (possible typo)
src/Makefile.am:1182: warning: variable 'velocity_counts_LDADD' is defined but no program or
src/Makefile.am:1182: library has 'velocity_counts' as canonical name (possible typo)
src/Makefile.am:860: warning: variable 'compare2truth_LDFLAGS' is defined but no program or
src/Makefile.am:860: library has 'compare2truth' as canonical name (possible typo)
src/Makefile.am:1206: warning: variable 'gcount_bulk_LDFLAGS' is defined but no program or
src/Makefile.am:1206: library has 'gcount_bulk' as canonical name (possible typo)
src/Makefile.am:1232: warning: variable 'gcount_sc_LDFLAGS' is defined but no program or
src/Makefile.am:1232: library has 'gcount_sc' as canonical name (possible typo)
src/Makefile.am:214: warning: variable 'gexact_LDFLAGS' is defined but no program or
src/Makefile.am:214: library has 'gexact' as canonical name (possible typo)
src/Makefile.am:732: warning: variable 'gexact_arm_LDFLAGS' is defined but no program or
src/Makefile.am:732: library has 'gexact_arm' as canonical name (possible typo)
src/Makefile.am:762: warning: variable 'gexact_avx2_LDFLAGS' is defined but no program or
src/Makefile.am:762: library has 'gexact_avx2' as canonical name (possible typo)
src/Makefile.am:768: warning: variable 'gexact_avx512_LDFLAGS' is defined but no program or
src/Makefile.am:768: library has 'gexact_avx512' as canonical name (possible typo)
src/Makefile.am:774: warning: variable 'gexact_avx512bw_LDFLAGS' is defined but no program or
src/Makefile.am:774: library has 'gexact_avx512bw' as canonical name (possible typo)
src/Makefile.am:726: warning: variable 'gexact_nosimd_LDFLAGS' is defined but no program or
src/Makefile.am:726: library has 'gexact_nosimd' as canonical name (possible typo)
src/Makefile.am:738: warning: variable 'gexact_sse2_LDFLAGS' is defined but no program or
src/Makefile.am:738: library has 'gexact_sse2' as canonical name (possible typo)
src/Makefile.am:750: warning: variable 'gexact_sse41_LDFLAGS' is defined but no program or
src/Makefile.am:750: library has 'gexact_sse41' as canonical name (possible typo)
src/Makefile.am:756: warning: variable 'gexact_sse42_LDFLAGS' is defined but no program or
src/Makefile.am:756: library has 'gexact_sse42' as canonical name (possible typo)
src/Makefile.am:744: warning: variable 'gexact_ssse3_LDFLAGS' is defined but no program or
src/Makefile.am:744: library has 'gexact_ssse3' as canonical name (possible typo)
src/Makefile.am:221: warning: variable 'gfilter_LDFLAGS' is defined but no program or
src/Makefile.am:221: library has 'gfilter' as canonical name (possible typo)
src/Makefile.am:806: warning: variable 'gfilter_arm_LDFLAGS' is defined but no program or
src/Makefile.am:806: library has 'gfilter_arm' as canonical name (possible typo)
src/Makefile.am:836: warning: variable 'gfilter_avx2_LDFLAGS' is defined but no program or
src/Makefile.am:836: library has 'gfilter_avx2' as canonical name (possible typo)
src/Makefile.am:842: warning: variable 'gfilter_avx512_LDFLAGS' is defined but no program or
src/Makefile.am:842: library has 'gfilter_avx512' as canonical name (possible typo)
src/Makefile.am:848: warning: variable 'gfilter_avx512bw_LDFLAGS' is defined but no program or
src/Makefile.am:848: library has 'gfilter_avx512bw' as canonical name (possible typo)
src/Makefile.am:800: warning: variable 'gfilter_nosimd_LDFLAGS' is defined but no program or
src/Makefile.am:800: library has 'gfilter_nosimd' as canonical name (possible typo)
src/Makefile.am:812: warning: variable 'gfilter_sse2_LDFLAGS' is defined but no program or
src/Makefile.am:812: library has 'gfilter_sse2' as canonical name (possible typo)
src/Makefile.am:824: warning: variable 'gfilter_sse41_LDFLAGS' is defined but no program or
src/Makefile.am:824: library has 'gfilter_sse41' as canonical name (possible typo)
src/Makefile.am:830: warning: variable 'gfilter_sse42_LDFLAGS' is defined but no program or
src/Makefile.am:830: library has 'gfilter_sse42' as canonical name (possible typo)
src/Makefile.am:818: warning: variable 'gfilter_ssse3_LDFLAGS' is defined but no program or
src/Makefile.am:818: library has 'gfilter_ssse3' as canonical name (possible typo)
src/Makefile.am:1122: warning: variable 'iit_pileup_LDFLAGS' is defined but no program or
src/Makefile.am:1122: library has 'iit_pileup' as canonical name (possible typo)
src/Makefile.am:1144: warning: variable 'sam_sort_LDFLAGS' is defined but no program or
src/Makefile.am:1144: library has 'sam_sort' as canonical name (possible typo)
src/Makefile.am:1162: warning: variable 'umi_correct_LDFLAGS' is defined but no program or
src/Makefile.am:1162: library has 'umi_correct' as canonical name (possible typo)
src/Makefile.am:1181: warning: variable 'velocity_counts_LDFLAGS' is defined but no program or
src/Makefile.am:1181: library has 'velocity_counts' as canonical name (possible typo)
parallel-tests: installing 'config/test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf src/simde
DEB_CFLAGS_MAINT_APPEND="-O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI" dh_auto_configure --reload-all-buildenv-variables -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse2
	cd build && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse2
checking package version... 2024-02-22
checking CFLAGS... -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for non-Intel CPU... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking bindir... /usr/lib/gmap
checking for a working version of perl... /usr/bin/perl
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for C compiler vendor... gnu
checking for rint in -lm... yes
checking for pthreads feature... not specified so enabled by default
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for inline... inline
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for size_t... yes
checking for off_t... yes
checking for caddr_t... yes
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of off_t... 8
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether alloca is enabled... not specified so disabled by default
checking whether mmap is enabled... not specified so enabled by default
checking for working mmap with MAP_FIXED... yes
checking for working mmap with MAP_VARIABLE... no
checking for MAP_FILE in mmap... yes
checking for MAP_VARIABLE in mmap... no
checking for MAP_SHARED in mmap... yes
checking for MAP_PRIVATE in mmap... yes
checking for MAP_FAILED in mmap... yes
checking for MADV_DONTNEED in madvise... yes
checking for MADV_WILLNEED in madvise... yes
checking for MADV_RANDOM in madvise... yes
checking for MADV_SEQUENTIAL in madvise... yes
checking for SHM_NORESERVE in shmget... yes
checking for ceil... yes
checking for floor... yes
checking for index... yes
checking for log... yes
checking for madvise... yes
checking for memcpy... yes
checking for memmove... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for rint... yes
checking for stat64... yes
checking for strtoul... yes
checking for sysconf... yes
checking for sysctl... no
checking for sigaction... yes
checking for shmget... yes
checking for shmctl... yes
checking for shmat... yes
checking for shmdt... yes
checking for semget... yes
checking for semctl... yes
checking for semop... yes
checking for struct stat64... no
checking for pagesize via sysconf... yes
checking for pagesize via sysctl... no
checking whether fopen accepts "b" mode... yes
checking whether fopen accepts "t" mode... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether C compiler accepts -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -mpopcnt... yes
checking whether __builtin_popcount is declared... yes
checking whether __builtin_popcount works... yes
checking whether __builtin_clz is declared... yes
checking whether __builtin_clz works... yes
checking whether __builtin_ctz is declared... yes
checking whether __builtin_ctz works... yes
checking whether __builtin_clzll is declared... yes
checking whether __builtin_clzll works... yes
checking whether __builtin_ctzll is declared... yes
checking whether __builtin_ctzll works... yes
checking for bsr instruction in assembly... no
checking if compiler requires an immediate in sse2 _mm_slli_epi32 command... no
checking if compiler has STTNI commands... yes
checking for _mm_extract_epi64... yes
checking for _mm_popcnt_u64... yes
checking for whether simd is enabled... enabled
checking for sse2 support... yes
checking for ssse3 support... yes
checking for sse4.1 support... yes
checking for sse4.2 support... yes
checking for popcnt support... yes
checking for bmi1 support... no
checking for avx2 support... yes
checking for bmi2 support... no
checking for avx512 support... no
checking for avx512bw and avx512vl support... no
checking whether C compiler accepts -msse2... yes
checking for emmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3... yes
checking for tmmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes
checking for smmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes
checking for nmmintrin.h header file... yes
checking for mm_popcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes
checking for immintrin.h header file... yes
checking for user-selected SIMD level... sse2
checking gmapdb... /var/cache/gmap
checking for zlib support... enabled
checking for zlib.h... yes
checking for gzopen in -lz... yes
checking for gzeof in -lz... yes
checking for gzgetc in -lz... yes
checking for gzgets in -lz... yes
checking for gzclose in -lz... yes
checking if zlib package is complete... working
checking for gzbuffer in -lz... yes
checking for bzlib support... enabled
checking for bzlib.h... yes
checking for BZ2_bzReadOpen in -lbz2... yes
checking for BZ2_bzRead in -lbz2... yes
checking for BZ2_bzReadClose in -lbz2... yes
checking if bzlib package is complete... working
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/gmap_process.pl
config.status: creating util/gmap_build.pl
config.status: creating util/gmap_cat.pl
config.status: creating util/md_coords.pl
config.status: creating util/fa_coords.pl
config.status: creating util/psl_splicesites.pl
config.status: creating util/psl_introns.pl
config.status: creating util/psl_genes.pl
config.status: creating util/ensembl_genes.pl
config.status: creating util/gtf_splicesites.pl
config.status: creating util/gtf_transcript_splicesites.pl
config.status: creating util/gtf_introns.pl
config.status: creating util/gtf_genes.pl
config.status: creating util/gff3_splicesites.pl
config.status: creating util/gff3_introns.pl
config.status: creating util/gff3_genes.pl
config.status: creating util/dbsnp_iit.pl
config.status: creating util/gvf_iit.pl
config.status: creating util/vcf_iit.pl
config.status: creating tests/Makefile
config.status: creating tests/align.test
config.status: creating tests/coords1.test
config.status: creating tests/setup1.test
config.status: creating tests/iit.test
config.status: creating src/config.h
config.status: executing depfiles commands
checking standard compiler and flags to be used... gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI
checking standard linker flags to be used... 
checking pthread compiler flags to be used... 
checking popcnt flags to be used... -mpopcnt
checking compile level... sse2
checking SSE2 compiler flags to be used... -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2
DEB_CFLAGS_MAINT_APPEND="-O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI" dh_auto_configure --reload-all-buildenv-variables --builddir build_ssse3 -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap --enable-simd --with-simd-level=ssse3 ax_cv_cpu_has_ssse3_ext=yes ax_cv_compile_ssse3_ext=yes ax_cv_link_tmmintrin_h=yes
	cd build_ssse3 && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=ssse3 ax_cv_cpu_has_ssse3_ext=yes ax_cv_compile_ssse3_ext=yes ax_cv_link_tmmintrin_h=yes
checking package version... 2024-02-22
checking CFLAGS... -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for non-Intel CPU... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking bindir... /usr/lib/gmap
checking for a working version of perl... /usr/bin/perl
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for C compiler vendor... gnu
checking for rint in -lm... yes
checking for pthreads feature... not specified so enabled by default
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for inline... inline
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for size_t... yes
checking for off_t... yes
checking for caddr_t... yes
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of off_t... 8
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether alloca is enabled... not specified so disabled by default
checking whether mmap is enabled... not specified so enabled by default
checking for working mmap with MAP_FIXED... yes
checking for working mmap with MAP_VARIABLE... no
checking for MAP_FILE in mmap... yes
checking for MAP_VARIABLE in mmap... no
checking for MAP_SHARED in mmap... yes
checking for MAP_PRIVATE in mmap... yes
checking for MAP_FAILED in mmap... yes
checking for MADV_DONTNEED in madvise... yes
checking for MADV_WILLNEED in madvise... yes
checking for MADV_RANDOM in madvise... yes
checking for MADV_SEQUENTIAL in madvise... yes
checking for SHM_NORESERVE in shmget... yes
checking for ceil... yes
checking for floor... yes
checking for index... yes
checking for log... yes
checking for madvise... yes
checking for memcpy... yes
checking for memmove... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for rint... yes
checking for stat64... yes
checking for strtoul... yes
checking for sysconf... yes
checking for sysctl... no
checking for sigaction... yes
checking for shmget... yes
checking for shmctl... yes
checking for shmat... yes
checking for shmdt... yes
checking for semget... yes
checking for semctl... yes
checking for semop... yes
checking for struct stat64... no
checking for pagesize via sysconf... yes
checking for pagesize via sysctl... no
checking whether fopen accepts "b" mode... yes
checking whether fopen accepts "t" mode... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether C compiler accepts -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -mpopcnt... yes
checking whether __builtin_popcount is declared... yes
checking whether __builtin_popcount works... yes
checking whether __builtin_clz is declared... yes
checking whether __builtin_clz works... yes
checking whether __builtin_ctz is declared... yes
checking whether __builtin_ctz works... yes
checking whether __builtin_clzll is declared... yes
checking whether __builtin_clzll works... yes
checking whether __builtin_ctzll is declared... yes
checking whether __builtin_ctzll works... yes
checking for bsr instruction in assembly... no
checking if compiler requires an immediate in sse2 _mm_slli_epi32 command... no
checking if compiler has STTNI commands... yes
checking for _mm_extract_epi64... yes
checking for _mm_popcnt_u64... yes
checking for whether simd is enabled... enabled
checking for sse2 support... yes
checking for ssse3 support... yes
checking for sse4.1 support... yes
checking for sse4.2 support... yes
checking for popcnt support... yes
checking for bmi1 support... no
checking for avx2 support... yes
checking for bmi2 support... no
checking for avx512 support... no
checking for avx512bw and avx512vl support... no
checking whether C compiler accepts -msse2... yes
checking for emmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3... yes
checking for tmmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes
checking for smmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes
checking for nmmintrin.h header file... yes
checking for mm_popcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes
checking for immintrin.h header file... yes
checking for user-selected SIMD level... ssse3
checking gmapdb... /var/cache/gmap
checking for zlib support... enabled
checking for zlib.h... yes
checking for gzopen in -lz... yes
checking for gzeof in -lz... yes
checking for gzgetc in -lz... yes
checking for gzgets in -lz... yes
checking for gzclose in -lz... yes
checking if zlib package is complete... working
checking for gzbuffer in -lz... yes
checking for bzlib support... enabled
checking for bzlib.h... yes
checking for BZ2_bzReadOpen in -lbz2... yes
checking for BZ2_bzRead in -lbz2... yes
checking for BZ2_bzReadClose in -lbz2... yes
checking if bzlib package is complete... working
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/gmap_process.pl
config.status: creating util/gmap_build.pl
config.status: creating util/gmap_cat.pl
config.status: creating util/md_coords.pl
config.status: creating util/fa_coords.pl
config.status: creating util/psl_splicesites.pl
config.status: creating util/psl_introns.pl
config.status: creating util/psl_genes.pl
config.status: creating util/ensembl_genes.pl
config.status: creating util/gtf_splicesites.pl
config.status: creating util/gtf_transcript_splicesites.pl
config.status: creating util/gtf_introns.pl
config.status: creating util/gtf_genes.pl
config.status: creating util/gff3_splicesites.pl
config.status: creating util/gff3_introns.pl
config.status: creating util/gff3_genes.pl
config.status: creating util/dbsnp_iit.pl
config.status: creating util/gvf_iit.pl
config.status: creating util/vcf_iit.pl
config.status: creating tests/Makefile
config.status: creating tests/align.test
config.status: creating tests/coords1.test
config.status: creating tests/setup1.test
config.status: creating tests/iit.test
config.status: creating src/config.h
config.status: executing depfiles commands
checking standard compiler and flags to be used... gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI
checking standard linker flags to be used... 
checking pthread compiler flags to be used... 
checking popcnt flags to be used... -mpopcnt
checking compile level... ssse3
checking SSSE3 compiler flags to be used... -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2
DEB_CFLAGS_MAINT_APPEND="-O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_STTNI" dh_auto_configure --builddir build_sse41 -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse41 ax_cv_cpu_has_sse41_ext=yes ax_cv_compile_sse41_ext=yes ax_cv_link_smmintrin_h=yes
	cd build_sse41 && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse41 ax_cv_cpu_has_sse41_ext=yes ax_cv_compile_sse41_ext=yes ax_cv_link_smmintrin_h=yes
checking package version... 2024-02-22
checking CFLAGS... -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for non-Intel CPU... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking bindir... /usr/lib/gmap
checking for a working version of perl... /usr/bin/perl
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for C compiler vendor... gnu
checking for rint in -lm... yes
checking for pthreads feature... not specified so enabled by default
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for inline... inline
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for size_t... yes
checking for off_t... yes
checking for caddr_t... yes
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of off_t... 8
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether alloca is enabled... not specified so disabled by default
checking whether mmap is enabled... not specified so enabled by default
checking for working mmap with MAP_FIXED... yes
checking for working mmap with MAP_VARIABLE... no
checking for MAP_FILE in mmap... yes
checking for MAP_VARIABLE in mmap... no
checking for MAP_SHARED in mmap... yes
checking for MAP_PRIVATE in mmap... yes
checking for MAP_FAILED in mmap... yes
checking for MADV_DONTNEED in madvise... yes
checking for MADV_WILLNEED in madvise... yes
checking for MADV_RANDOM in madvise... yes
checking for MADV_SEQUENTIAL in madvise... yes
checking for SHM_NORESERVE in shmget... yes
checking for ceil... yes
checking for floor... yes
checking for index... yes
checking for log... yes
checking for madvise... yes
checking for memcpy... yes
checking for memmove... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for rint... yes
checking for stat64... yes
checking for strtoul... yes
checking for sysconf... yes
checking for sysctl... no
checking for sigaction... yes
checking for shmget... yes
checking for shmctl... yes
checking for shmat... yes
checking for shmdt... yes
checking for semget... yes
checking for semctl... yes
checking for semop... yes
checking for struct stat64... no
checking for pagesize via sysconf... yes
checking for pagesize via sysctl... no
checking whether fopen accepts "b" mode... yes
checking whether fopen accepts "t" mode... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether C compiler accepts -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -mpopcnt... yes
checking whether __builtin_popcount is declared... yes
checking whether __builtin_popcount works... yes
checking whether __builtin_clz is declared... yes
checking whether __builtin_clz works... yes
checking whether __builtin_ctz is declared... yes
checking whether __builtin_ctz works... yes
checking whether __builtin_clzll is declared... yes
checking whether __builtin_clzll works... yes
checking whether __builtin_ctzll is declared... yes
checking whether __builtin_ctzll works... yes
checking for bsr instruction in assembly... no
checking if compiler requires an immediate in sse2 _mm_slli_epi32 command... no
checking if compiler has STTNI commands... yes
checking for _mm_extract_epi64... yes
checking for _mm_popcnt_u64... yes
checking for whether simd is enabled... enabled
checking for sse2 support... yes
checking for ssse3 support... yes
checking for sse4.1 support... yes
checking for sse4.2 support... yes
checking for popcnt support... yes
checking for bmi1 support... no
checking for avx2 support... yes
checking for bmi2 support... no
checking for avx512 support... no
checking for avx512bw and avx512vl support... no
checking whether C compiler accepts -msse2... yes
checking for emmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3... yes
checking for tmmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes
checking for smmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes
checking for nmmintrin.h header file... yes
checking for mm_popcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes
checking for immintrin.h header file... yes
checking for user-selected SIMD level... sse41
checking gmapdb... /var/cache/gmap
checking for zlib support... enabled
checking for zlib.h... yes
checking for gzopen in -lz... yes
checking for gzeof in -lz... yes
checking for gzgetc in -lz... yes
checking for gzgets in -lz... yes
checking for gzclose in -lz... yes
checking if zlib package is complete... working
checking for gzbuffer in -lz... yes
checking for bzlib support... enabled
checking for bzlib.h... yes
checking for BZ2_bzReadOpen in -lbz2... yes
checking for BZ2_bzRead in -lbz2... yes
checking for BZ2_bzReadClose in -lbz2... yes
checking if bzlib package is complete... working
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/gmap_process.pl
config.status: creating util/gmap_build.pl
config.status: creating util/gmap_cat.pl
config.status: creating util/md_coords.pl
config.status: creating util/fa_coords.pl
config.status: creating util/psl_splicesites.pl
config.status: creating util/psl_introns.pl
config.status: creating util/psl_genes.pl
config.status: creating util/ensembl_genes.pl
config.status: creating util/gtf_splicesites.pl
config.status: creating util/gtf_transcript_splicesites.pl
config.status: creating util/gtf_introns.pl
config.status: creating util/gtf_genes.pl
config.status: creating util/gff3_splicesites.pl
config.status: creating util/gff3_introns.pl
config.status: creating util/gff3_genes.pl
config.status: creating util/dbsnp_iit.pl
config.status: creating util/gvf_iit.pl
config.status: creating util/vcf_iit.pl
config.status: creating tests/Makefile
config.status: creating tests/align.test
config.status: creating tests/coords1.test
config.status: creating tests/setup1.test
config.status: creating tests/iit.test
config.status: creating src/config.h
config.status: executing depfiles commands
checking standard compiler and flags to be used... gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking standard linker flags to be used... 
checking pthread compiler flags to be used... 
checking popcnt flags to be used... -mpopcnt
checking compile level... sse41
checking SSE4.1 compiler flags to be used... -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2
dh_auto_configure --builddir build_sse42 -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse42 ax_cv_cpu_has_sse42_ext=yes ax_cv_compile_sse42_ext=yes ax_cv_link_nmmintrin_h=yes ax_cv_cpu_has_popcnt_ext=yes ax_make_sse42=yes ax_cv_cpu_has_bmi1_ext=yes ax_cv_compile_bmi_ext=yes ax_cv_link_bmi=yes
	cd build_sse42 && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=sse42 ax_cv_cpu_has_sse42_ext=yes ax_cv_compile_sse42_ext=yes ax_cv_link_nmmintrin_h=yes ax_cv_cpu_has_popcnt_ext=yes ax_make_sse42=yes ax_cv_cpu_has_bmi1_ext=yes ax_cv_compile_bmi_ext=yes ax_cv_link_bmi=yes
checking package version... 2024-02-22
checking CFLAGS... -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for non-Intel CPU... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking bindir... /usr/lib/gmap
checking for a working version of perl... /usr/bin/perl
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for C compiler vendor... gnu
checking for rint in -lm... yes
checking for pthreads feature... not specified so enabled by default
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for inline... inline
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for size_t... yes
checking for off_t... yes
checking for caddr_t... yes
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of off_t... 8
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether alloca is enabled... not specified so disabled by default
checking whether mmap is enabled... not specified so enabled by default
checking for working mmap with MAP_FIXED... yes
checking for working mmap with MAP_VARIABLE... no
checking for MAP_FILE in mmap... yes
checking for MAP_VARIABLE in mmap... no
checking for MAP_SHARED in mmap... yes
checking for MAP_PRIVATE in mmap... yes
checking for MAP_FAILED in mmap... yes
checking for MADV_DONTNEED in madvise... yes
checking for MADV_WILLNEED in madvise... yes
checking for MADV_RANDOM in madvise... yes
checking for MADV_SEQUENTIAL in madvise... yes
checking for SHM_NORESERVE in shmget... yes
checking for ceil... yes
checking for floor... yes
checking for index... yes
checking for log... yes
checking for madvise... yes
checking for memcpy... yes
checking for memmove... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for rint... yes
checking for stat64... yes
checking for strtoul... yes
checking for sysconf... yes
checking for sysctl... no
checking for sigaction... yes
checking for shmget... yes
checking for shmctl... yes
checking for shmat... yes
checking for shmdt... yes
checking for semget... yes
checking for semctl... yes
checking for semop... yes
checking for struct stat64... no
checking for pagesize via sysconf... yes
checking for pagesize via sysctl... no
checking whether fopen accepts "b" mode... yes
checking whether fopen accepts "t" mode... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether C compiler accepts -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -mpopcnt... yes
checking whether __builtin_popcount is declared... yes
checking whether __builtin_popcount works... yes
checking whether __builtin_clz is declared... yes
checking whether __builtin_clz works... yes
checking whether __builtin_ctz is declared... yes
checking whether __builtin_ctz works... yes
checking whether __builtin_clzll is declared... yes
checking whether __builtin_clzll works... yes
checking whether __builtin_ctzll is declared... yes
checking whether __builtin_ctzll works... yes
checking for bsr instruction in assembly... no
checking if compiler requires an immediate in sse2 _mm_slli_epi32 command... no
checking if compiler has STTNI commands... yes
checking for _mm_extract_epi64... yes
checking for _mm_popcnt_u64... yes
checking for whether simd is enabled... enabled
checking for sse2 support... yes
checking for ssse3 support... yes
checking for sse4.1 support... yes
checking for sse4.2 support... yes
checking for popcnt support... yes
checking for bmi1 support... no
checking for avx2 support... yes
checking for bmi2 support... no
checking for avx512 support... no
checking for avx512bw and avx512vl support... no
checking whether C compiler accepts -msse2... yes
checking for emmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3... yes
checking for tmmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes
checking for smmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes
checking for nmmintrin.h header file... yes
checking for mm_popcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mabm... yes
checking for abm linker support... yes
checking for _popcnt32 run support... yes
checking for _lzcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi... yes
checking for bmi linker support... yes
checking for _tzcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mavx2... yes
checking for immintrin.h header file... yes
checking for user-selected SIMD level... sse42
checking gmapdb... /var/cache/gmap
checking for zlib support... enabled
checking for zlib.h... yes
checking for gzopen in -lz... yes
checking for gzeof in -lz... yes
checking for gzgetc in -lz... yes
checking for gzgets in -lz... yes
checking for gzclose in -lz... yes
checking if zlib package is complete... working
checking for gzbuffer in -lz... yes
checking for bzlib support... enabled
checking for bzlib.h... yes
checking for BZ2_bzReadOpen in -lbz2... yes
checking for BZ2_bzRead in -lbz2... yes
checking for BZ2_bzReadClose in -lbz2... yes
checking if bzlib package is complete... working
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/gmap_process.pl
config.status: creating util/gmap_build.pl
config.status: creating util/gmap_cat.pl
config.status: creating util/md_coords.pl
config.status: creating util/fa_coords.pl
config.status: creating util/psl_splicesites.pl
config.status: creating util/psl_introns.pl
config.status: creating util/psl_genes.pl
config.status: creating util/ensembl_genes.pl
config.status: creating util/gtf_splicesites.pl
config.status: creating util/gtf_transcript_splicesites.pl
config.status: creating util/gtf_introns.pl
config.status: creating util/gtf_genes.pl
config.status: creating util/gff3_splicesites.pl
config.status: creating util/gff3_introns.pl
config.status: creating util/gff3_genes.pl
config.status: creating util/dbsnp_iit.pl
config.status: creating util/gvf_iit.pl
config.status: creating util/vcf_iit.pl
config.status: creating tests/Makefile
config.status: creating tests/align.test
config.status: creating tests/coords1.test
config.status: creating tests/setup1.test
config.status: creating tests/iit.test
config.status: creating src/config.h
config.status: executing depfiles commands
checking standard compiler and flags to be used... gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking standard linker flags to be used... 
checking pthread compiler flags to be used... 
checking popcnt flags to be used... -mpopcnt
checking compile level... sse42
checking SSE4.2 compiler flags to be used... -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2
dh_auto_configure --builddir build_avx2 -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap --enable-simd --with-simd-level=avx2 ax_make_avx2=yes ax_cv_cpu_has_bmi2_ext=yes ax_cv_compile_bmi2_ext=yes ax_cv_link_bmi2=yes
	cd build_avx2 && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=avx2 ax_make_avx2=yes ax_cv_cpu_has_bmi2_ext=yes ax_cv_compile_bmi2_ext=yes ax_cv_link_bmi2=yes
checking package version... 2024-02-22
checking CFLAGS... -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for non-Intel CPU... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking bindir... /usr/lib/gmap
checking for a working version of perl... /usr/bin/perl
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for C compiler vendor... gnu
checking for rint in -lm... yes
checking for pthreads feature... not specified so enabled by default
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for inline... inline
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for size_t... yes
checking for off_t... yes
checking for caddr_t... yes
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of off_t... 8
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether alloca is enabled... not specified so disabled by default
checking whether mmap is enabled... not specified so enabled by default
checking for working mmap with MAP_FIXED... yes
checking for working mmap with MAP_VARIABLE... no
checking for MAP_FILE in mmap... yes
checking for MAP_VARIABLE in mmap... no
checking for MAP_SHARED in mmap... yes
checking for MAP_PRIVATE in mmap... yes
checking for MAP_FAILED in mmap... yes
checking for MADV_DONTNEED in madvise... yes
checking for MADV_WILLNEED in madvise... yes
checking for MADV_RANDOM in madvise... yes
checking for MADV_SEQUENTIAL in madvise... yes
checking for SHM_NORESERVE in shmget... yes
checking for ceil... yes
checking for floor... yes
checking for index... yes
checking for log... yes
checking for madvise... yes
checking for memcpy... yes
checking for memmove... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for rint... yes
checking for stat64... yes
checking for strtoul... yes
checking for sysconf... yes
checking for sysctl... no
checking for sigaction... yes
checking for shmget... yes
checking for shmctl... yes
checking for shmat... yes
checking for shmdt... yes
checking for semget... yes
checking for semctl... yes
checking for semop... yes
checking for struct stat64... no
checking for pagesize via sysconf... yes
checking for pagesize via sysctl... no
checking whether fopen accepts "b" mode... yes
checking whether fopen accepts "t" mode... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether C compiler accepts -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -mpopcnt... yes
checking whether __builtin_popcount is declared... yes
checking whether __builtin_popcount works... yes
checking whether __builtin_clz is declared... yes
checking whether __builtin_clz works... yes
checking whether __builtin_ctz is declared... yes
checking whether __builtin_ctz works... yes
checking whether __builtin_clzll is declared... yes
checking whether __builtin_clzll works... yes
checking whether __builtin_ctzll is declared... yes
checking whether __builtin_ctzll works... yes
checking for bsr instruction in assembly... no
checking if compiler requires an immediate in sse2 _mm_slli_epi32 command... no
checking if compiler has STTNI commands... yes
checking for _mm_extract_epi64... yes
checking for _mm_popcnt_u64... yes
checking for whether simd is enabled... enabled
checking for sse2 support... yes
checking for ssse3 support... yes
checking for sse4.1 support... yes
checking for sse4.2 support... yes
checking for popcnt support... yes
checking for bmi1 support... no
checking for avx2 support... yes
checking for bmi2 support... no
checking for avx512 support... no
checking for avx512bw and avx512vl support... no
checking whether C compiler accepts -msse2... yes
checking for emmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3... yes
checking for tmmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes
checking for smmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes
checking for nmmintrin.h header file... yes
checking for mm_popcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes
checking for immintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2... yes
checking for bmi2 linker support... yes
checking for _pext run support... yes
checking for user-selected SIMD level... avx2
checking gmapdb... /var/cache/gmap
checking for zlib support... enabled
checking for zlib.h... yes
checking for gzopen in -lz... yes
checking for gzeof in -lz... yes
checking for gzgetc in -lz... yes
checking for gzgets in -lz... yes
checking for gzclose in -lz... yes
checking if zlib package is complete... working
checking for gzbuffer in -lz... yes
checking for bzlib support... enabled
checking for bzlib.h... yes
checking for BZ2_bzReadOpen in -lbz2... yes
checking for BZ2_bzRead in -lbz2... yes
checking for BZ2_bzReadClose in -lbz2... yes
checking if bzlib package is complete... working
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/gmap_process.pl
config.status: creating util/gmap_build.pl
config.status: creating util/gmap_cat.pl
config.status: creating util/md_coords.pl
config.status: creating util/fa_coords.pl
config.status: creating util/psl_splicesites.pl
config.status: creating util/psl_introns.pl
config.status: creating util/psl_genes.pl
config.status: creating util/ensembl_genes.pl
config.status: creating util/gtf_splicesites.pl
config.status: creating util/gtf_transcript_splicesites.pl
config.status: creating util/gtf_introns.pl
config.status: creating util/gtf_genes.pl
config.status: creating util/gff3_splicesites.pl
config.status: creating util/gff3_introns.pl
config.status: creating util/gff3_genes.pl
config.status: creating util/dbsnp_iit.pl
config.status: creating util/gvf_iit.pl
config.status: creating util/vcf_iit.pl
config.status: creating tests/Makefile
config.status: creating tests/align.test
config.status: creating tests/coords1.test
config.status: creating tests/setup1.test
config.status: creating tests/iit.test
config.status: creating src/config.h
config.status: executing depfiles commands
checking standard compiler and flags to be used... gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking standard linker flags to be used... 
checking pthread compiler flags to be used... 
checking popcnt flags to be used... -mpopcnt
checking compile level... avx2
checking AVX2 compiler flags to be used... -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2
dh_auto_configure --builddir build_avx512 -- --with-gmapdb=/var/cache/gmap \
--bindir=/usr/lib/gmap --enable-simd --with-simd-level=avx512 ax_cv_cpu_has_avx512_ext=yes ax_cv_compile_avx512_ext=yes ax_cv_compile_avx512bw_ext=no ax_cv_link_avx512bw=no
	cd build_avx512 && ../configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-gmapdb=/var/cache/gmap --bindir=/usr/lib/gmap --enable-simd --with-simd-level=avx512 ax_cv_cpu_has_avx512_ext=yes ax_cv_compile_avx512_ext=yes ax_cv_compile_avx512bw_ext=no ax_cv_link_avx512bw=no
checking package version... 2024-02-22
checking CFLAGS... -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for non-Intel CPU... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... none
checking whether to enable maintainer-specific portions of Makefiles... no
checking bindir... /usr/lib/gmap
checking for a working version of perl... /usr/bin/perl
checking for gcc... (cached) gcc
checking whether the compiler supports GNU C... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to enable C11 features... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking for C compiler vendor... gnu
checking for rint in -lm... yes
checking for pthreads feature... not specified so enabled by default
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for cc_r... gcc
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for inline... inline
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for size_t... yes
checking for off_t... yes
checking for caddr_t... yes
checking size of unsigned long... 8
checking size of unsigned long long... 8
checking size of off_t... 8
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether alloca is enabled... not specified so disabled by default
checking whether mmap is enabled... not specified so enabled by default
checking for working mmap with MAP_FIXED... yes
checking for working mmap with MAP_VARIABLE... no
checking for MAP_FILE in mmap... yes
checking for MAP_VARIABLE in mmap... no
checking for MAP_SHARED in mmap... yes
checking for MAP_PRIVATE in mmap... yes
checking for MAP_FAILED in mmap... yes
checking for MADV_DONTNEED in madvise... yes
checking for MADV_WILLNEED in madvise... yes
checking for MADV_RANDOM in madvise... yes
checking for MADV_SEQUENTIAL in madvise... yes
checking for SHM_NORESERVE in shmget... yes
checking for ceil... yes
checking for floor... yes
checking for index... yes
checking for log... yes
checking for madvise... yes
checking for memcpy... yes
checking for memmove... yes
checking for memset... yes
checking for munmap... yes
checking for pow... yes
checking for rint... yes
checking for stat64... yes
checking for strtoul... yes
checking for sysconf... yes
checking for sysctl... no
checking for sigaction... yes
checking for shmget... yes
checking for shmctl... yes
checking for shmat... yes
checking for shmdt... yes
checking for semget... yes
checking for semctl... yes
checking for semop... yes
checking for struct stat64... no
checking for pagesize via sysconf... yes
checking for pagesize via sysctl... no
checking whether fopen accepts "b" mode... yes
checking whether fopen accepts "t" mode... yes
checking for gcc options needed to detect all undeclared functions... none needed
checking whether C compiler accepts -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -mpopcnt... yes
checking whether __builtin_popcount is declared... yes
checking whether __builtin_popcount works... yes
checking whether __builtin_clz is declared... yes
checking whether __builtin_clz works... yes
checking whether __builtin_ctz is declared... yes
checking whether __builtin_ctz works... yes
checking whether __builtin_clzll is declared... yes
checking whether __builtin_clzll works... yes
checking whether __builtin_ctzll is declared... yes
checking whether __builtin_ctzll works... yes
checking for bsr instruction in assembly... no
checking if compiler requires an immediate in sse2 _mm_slli_epi32 command... no
checking if compiler has STTNI commands... yes
checking for _mm_extract_epi64... yes
checking for _mm_popcnt_u64... yes
checking for whether simd is enabled... enabled
checking for sse2 support... yes
checking for ssse3 support... yes
checking for sse4.1 support... yes
checking for sse4.2 support... yes
checking for popcnt support... yes
checking for bmi1 support... no
checking for avx2 support... yes
checking for bmi2 support... no
checking for avx512 support... no
checking for avx512bw and avx512vl support... no
checking whether C compiler accepts -msse2... yes
checking for emmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3... yes
checking for tmmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes
checking for smmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes
checking for nmmintrin.h header file... yes
checking for mm_popcnt run support... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes
checking for immintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd... yes
checking for nmmintrin.h header file... yes
checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw... yes
checking for avx512vl and avx512bw linker support... yes
checking for user-selected SIMD level... avx512
checking gmapdb... /var/cache/gmap
checking for zlib support... enabled
checking for zlib.h... yes
checking for gzopen in -lz... yes
checking for gzeof in -lz... yes
checking for gzgetc in -lz... yes
checking for gzgets in -lz... yes
checking for gzclose in -lz... yes
checking if zlib package is complete... working
checking for gzbuffer in -lz... yes
checking for bzlib support... enabled
checking for bzlib.h... yes
checking for BZ2_bzReadOpen in -lbz2... yes
checking for BZ2_bzRead in -lbz2... yes
checking for BZ2_bzReadClose in -lbz2... yes
checking if bzlib package is complete... working
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating util/gmap_process.pl
config.status: creating util/gmap_build.pl
config.status: creating util/gmap_cat.pl
config.status: creating util/md_coords.pl
config.status: creating util/fa_coords.pl
config.status: creating util/psl_splicesites.pl
config.status: creating util/psl_introns.pl
config.status: creating util/psl_genes.pl
config.status: creating util/ensembl_genes.pl
config.status: creating util/gtf_splicesites.pl
config.status: creating util/gtf_transcript_splicesites.pl
config.status: creating util/gtf_introns.pl
config.status: creating util/gtf_genes.pl
config.status: creating util/gff3_splicesites.pl
config.status: creating util/gff3_introns.pl
config.status: creating util/gff3_genes.pl
config.status: creating util/dbsnp_iit.pl
config.status: creating util/gvf_iit.pl
config.status: creating util/vcf_iit.pl
config.status: creating tests/Makefile
config.status: creating tests/align.test
config.status: creating tests/coords1.test
config.status: creating tests/setup1.test
config.status: creating tests/iit.test
config.status: creating src/config.h
config.status: executing depfiles commands
checking standard compiler and flags to be used... gcc -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration
checking standard linker flags to be used... 
checking pthread compiler flags to be used... 
checking popcnt flags to be used... -mpopcnt
checking compile level... avx512
checking AVX512 compiler flags to be used... -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw
# skipping avx512bw for now:
# ../../src/oligoindex_hr.c: In function 'count_positions_fwd_simd':
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
	cd build && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/src'
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/src'
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo '../../src/'`gmap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo '../../src/'`gmapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo '../../src/'`get-genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo '../../src/'`saca-k.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-localdb-write.o `test -f 'localdb-write.c' || echo '../../src/'`localdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo '../../src/'`tableuint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo '../../src/'`bytecoding.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo '../../src/'`sarray-write.c
In file included from ../../src/sarray-write.c:34:
../../src/sarray-write.c: In function ‘Sarray_write_csa’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:808:3: note: in expansion of macro ‘FREAD_UINT’
  808 |   FREAD_UINT(&sa_i,sa_fp);
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:815:5: note: in expansion of macro ‘FREAD_UINTS’
  815 |     FREAD_UINTS(read_buffer,RW_BATCH,sa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:828:5: note: in expansion of macro ‘FREAD_UINT’
  828 |     FREAD_UINT(&sa_i,sa_fp);
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1022:5: note: in expansion of macro ‘FREAD_UINTS’
 1022 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1033:5: note: in expansion of macro ‘FREAD_UINT’
 1033 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1064:5: note: in expansion of macro ‘FREAD_UINTS’
 1064 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1080:5: note: in expansion of macro ‘FREAD_UINT’
 1080 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1111:5: note: in expansion of macro ‘FREAD_UINTS’
 1111 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1112:5: note: in expansion of macro ‘FREAD_UINTS’
 1112 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1140:5: note: in expansion of macro ‘FREAD_UINT’
 1140 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1141:5: note: in expansion of macro ‘FREAD_UINT’
 1141 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp_bytes’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1246:5: note: in expansion of macro ‘FREAD_UINTS’
 1246 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1257:5: note: in expansion of macro ‘FREAD_UINT’
 1257 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1288:5: note: in expansion of macro ‘FREAD_UINTS’
 1288 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1304:5: note: in expansion of macro ‘FREAD_UINT’
 1304 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1335:5: note: in expansion of macro ‘FREAD_UINTS’
 1335 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1336:5: note: in expansion of macro ‘FREAD_UINTS’
 1336 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1370:5: note: in expansion of macro ‘FREAD_UINT’
 1370 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1371:5: note: in expansion of macro ‘FREAD_UINT’
 1371 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_discriminating_chars’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2318:3: note: in expansion of macro ‘FREAD_UINT’
 2318 |   FREAD_UINT(&SA_i_minus_1,fp); /* Initializes SA[0] */
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2321:5: note: in expansion of macro ‘FREAD_UINTS’
 2321 |     FREAD_UINTS(read_buffer,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2443:5: note: in expansion of macro ‘FREAD_UINT’
 2443 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo '../../src/'`gmapindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo '../../src/'`indexdb-cat.c
../../src/indexdb-cat.c: In function ‘main’:
../../src/indexdb-cat.c:823:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  823 |     fprintf(stderr,"Total number of offsets: %llu => pages file not required\n",total_noffsets);
      |                                              ~~~^                               ~~~~~~~~~~~~~~
      |                                                 |                               |
      |                                                 long long unsigned int          Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:827:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  827 |     fprintf(stderr,"Total number of offsets: %llu => pages file required\n",total_noffsets);
      |                                              ~~~^                           ~~~~~~~~~~~~~~
      |                                                 |                           |
      |                                                 long long unsigned int      Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:901:14: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |           ~~~^         ~~~~~~~~~~~~~~
      |              |         |
      |              |         Univcoord_T {aka long unsigned int}
      |              long long unsigned int
      |           %lu
../../src/indexdb-cat.c:901:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |                ~~~^                   ~~~~~~~~~~~~~~~~~~
      |                   |                   |
      |                   |                   Univcoord_T {aka long unsigned int}
      |                   long long unsigned int
      |                %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo '../../src/'`iit-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo '../../src/'`iit_store.c
../../src/iit_store.c: In function ‘parse_fasta’:
../../src/iit_store.c:689:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  689 |       fprintf(stderr,"Assigning %llu to end\n",end);
      |                                 ~~~^           ~~~
      |                                    |           |
      |                                    |           Univcoord_T {aka long unsigned int}
      |                                    long long unsigned int
      |                                 %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo '../../src/'`iit_get.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo '../../src/'`iit_dump.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo '../../src/'`gsnap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo '../../src/'`gsnapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo '../../src/'`snpindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo '../../src/'`cmetindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo '../../src/'`atoiindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-trindex.o `test -f 'trindex.c' || echo '../../src/'`trindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_sse2-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_sse2-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_sse2-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_sse2-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cpuid cpuid-cpuid.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap gmap-cpuid.o gmap-gmap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-get-genome.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-saca-k.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-popcount.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-indexdb-cat.o  -lz -lbz2 -lm 
gcc    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-iit_store.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-iit_get.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-iit_dump.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-snpindex.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1257:46,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1264:22,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-cmetindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-atoiindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-popcount.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-bitpack64-readtwo.o trindex-transcriptome.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-trindex.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-dinucl_bits.o gmap_nosimd-genome_canonical.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-printbuffer.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-dinucl_bits.o gmapl_nosimd-genome_canonical.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-uint8table_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-printbuffer.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genomebits.o gsnap_nosimd-genomebits_consec.o gsnap_nosimd-genomebits_count.o gsnap_nosimd-genomebits_kmer.o gsnap_nosimd-genomebits_indel.o gsnap_nosimd-genomebits_decode.o gsnap_nosimd-genomebits_mismatches.o gsnap_nosimd-genomebits_trim.o gsnap_nosimd-dinucl_bits.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-mergeinfo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-localdb-read.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-junction.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-pathpool.o gsnap_nosimd-auxinfopool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-select64-common.o gsnap_nosimd-select64-ones.o gsnap_nosimd-select64-zeroes.o gsnap_nosimd-ef64.o gsnap_nosimd-nr-x.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-knownindels.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-spliceendsgen.o gsnap_nosimd-spliceends.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-trdiag.o gsnap_nosimd-trdiagpool.o gsnap_nosimd-tr-extension-search.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-auxinfo.o gsnap_nosimd-altsplice.o gsnap_nosimd-path.o gsnap_nosimd-pathpair.o gsnap_nosimd-path-solve.o gsnap_nosimd-path-fusion.o gsnap_nosimd-path-trim.o gsnap_nosimd-path-eval.o gsnap_nosimd-pathpair-eval.o gsnap_nosimd-path-print-alignment.o gsnap_nosimd-path-print-m8.o gsnap_nosimd-path-print-sam.o gsnap_nosimd-path-learn.o gsnap_nosimd-method.o gsnap_nosimd-doublelist.o gsnap_nosimd-bitvector.o gsnap_nosimd-transcriptpool.o gsnap_nosimd-exon.o gsnap_nosimd-transcript.o gsnap_nosimd-trpathpool.o gsnap_nosimd-trpath.o gsnap_nosimd-trpath-solve.o gsnap_nosimd-trpath-convert.o gsnap_nosimd-transcriptome-search.o gsnap_nosimd-vectorpool.o gsnap_nosimd-repair.o gsnap_nosimd-transcript-remap.o gsnap_nosimd-transcript-velocity.o gsnap_nosimd-intersect-small.o gsnap_nosimd-intersect-uint2.o gsnap_nosimd-intersect-approx-uint4.o gsnap_nosimd-intersect-approx-indices-uint4.o gsnap_nosimd-intersect-wdups-indices.o gsnap_nosimd-intersect-lower-small.o gsnap_nosimd-intersect-higher-small.o gsnap_nosimd-intersect-indices-small.o gsnap_nosimd-intersect-indices2-small.o gsnap_nosimd-intersect-concordance-uint4.o gsnap_nosimd-kmer-search.o gsnap_nosimd-extension-search.o gsnap_nosimd-repetitive.o gsnap_nosimd-uint8table.o gsnap_nosimd-uinttable.o gsnap_nosimd-stage1hr.o gsnap_nosimd-stage1hr-single.o gsnap_nosimd-stage1hr-paired.o gsnap_nosimd-uinttableuint.o gsnap_nosimd-tableuint.o gsnap_nosimd-single-cell.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-printbuffer.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genomebits.o gsnapl_nosimd-genomebits_consec.o gsnapl_nosimd-genomebits_count.o gsnapl_nosimd-genomebits_kmer.o gsnapl_nosimd-genomebits_indel.o gsnapl_nosimd-genomebits_decode.o gsnapl_nosimd-genomebits_mismatches.o gsnapl_nosimd-genomebits_trim.o gsnapl_nosimd-dinucl_bits.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-mergeinfo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-localdb-read.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-junction.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uintlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-pathpool.o gsnapl_nosimd-auxinfopool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-select64-common.o gsnapl_nosimd-select64-ones.o gsnapl_nosimd-select64-zeroes.o gsnapl_nosimd-ef64.o gsnapl_nosimd-nr-x.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-knownindels.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-spliceendsgen.o gsnapl_nosimd-spliceends.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-trdiag.o gsnapl_nosimd-trdiagpool.o gsnapl_nosimd-tr-extension-search.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-auxinfo.o gsnapl_nosimd-altsplice.o gsnapl_nosimd-path.o gsnapl_nosimd-pathpair.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-path-fusion.o gsnapl_nosimd-path-trim.o gsnapl_nosimd-path-eval.o gsnapl_nosimd-pathpair-eval.o gsnapl_nosimd-path-print-alignment.o gsnapl_nosimd-path-print-m8.o gsnapl_nosimd-path-print-sam.o gsnapl_nosimd-path-learn.o gsnapl_nosimd-method.o gsnapl_nosimd-doublelist.o gsnapl_nosimd-bitvector.o gsnapl_nosimd-transcriptpool.o gsnapl_nosimd-exon.o gsnapl_nosimd-transcript.o gsnapl_nosimd-trpathpool.o gsnapl_nosimd-trpath.o gsnapl_nosimd-trpath-solve.o gsnapl_nosimd-trpath-convert.o gsnapl_nosimd-transcriptome-search.o gsnapl_nosimd-vectorpool.o gsnapl_nosimd-repair.o gsnapl_nosimd-transcript-remap.o gsnapl_nosimd-transcript-velocity.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-intersect-small.o gsnapl_nosimd-intersect-uint2.o gsnapl_nosimd-intersect-approx-uint4.o gsnapl_nosimd-intersect-approx-uint8.o gsnapl_nosimd-intersect-approx-indices-uint8.o gsnapl_nosimd-intersect-wdups-indices.o gsnapl_nosimd-intersect-lower-large.o gsnapl_nosimd-intersect-higher-large.o gsnapl_nosimd-intersect-indices-small.o gsnapl_nosimd-intersect-indices2-large.o gsnapl_nosimd-intersect-indices-uint8.o gsnapl_nosimd-intersect-concordance-uint8.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-repetitive.o gsnapl_nosimd-uint8table.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-stage1hr-single.o gsnapl_nosimd-stage1hr-paired.o gsnapl_nosimd-uint8tableuint.o gsnapl_nosimd-tableuint.o gsnapl_nosimd-single-cell.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-printbuffer.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.sse2 gmap_sse2-except.o gmap_sse2-assert.o gmap_sse2-mem.o gmap_sse2-intlist.o gmap_sse2-uintlist.o gmap_sse2-list.o gmap_sse2-littleendian.o gmap_sse2-bigendian.o gmap_sse2-univinterval.o gmap_sse2-interval.o gmap_sse2-stopwatch.o gmap_sse2-semaphore.o gmap_sse2-access.o gmap_sse2-filestring.o gmap_sse2-iit-read-univ.o gmap_sse2-iit-read.o gmap_sse2-md5.o gmap_sse2-bzip2.o gmap_sse2-fopen.o gmap_sse2-sequence.o gmap_sse2-reader.o gmap_sse2-genomicpos.o gmap_sse2-compress.o gmap_sse2-compress-write.o gmap_sse2-gbuffer.o gmap_sse2-genome.o gmap_sse2-popcount.o gmap_sse2-dinucl_bits.o gmap_sse2-genome_canonical.o gmap_sse2-genome-write.o gmap_sse2-bitpack64-read.o gmap_sse2-bitpack64-readtwo.o gmap_sse2-indexdb.o gmap_sse2-oligo.o gmap_sse2-block.o gmap_sse2-chrom.o gmap_sse2-segmentpos.o gmap_sse2-chrnum.o gmap_sse2-uinttable_rh.o gmap_sse2-gregion.o gmap_sse2-match.o gmap_sse2-matchpool.o gmap_sse2-diagnostic.o gmap_sse2-stage1.o gmap_sse2-diag.o gmap_sse2-diagpool.o gmap_sse2-cmet.o gmap_sse2-atoi.o gmap_sse2-orderstat.o gmap_sse2-oligoindex_hr.o gmap_sse2-intron.o gmap_sse2-maxent.o gmap_sse2-maxent_hr.o gmap_sse2-pair.o gmap_sse2-pairpool.o gmap_sse2-cellpool.o gmap_sse2-stage2.o gmap_sse2-doublelist.o gmap_sse2-smooth.o gmap_sse2-splicestringpool.o gmap_sse2-splicetrie_build.o gmap_sse2-splicetrie.o gmap_sse2-boyer-moore.o gmap_sse2-dynprog.o gmap_sse2-dynprog_simd.o gmap_sse2-dynprog_single.o gmap_sse2-dynprog_genome.o gmap_sse2-dynprog_cdna.o gmap_sse2-dynprog_end.o gmap_sse2-translation.o gmap_sse2-pbinom.o gmap_sse2-changepoint.o gmap_sse2-stage3.o gmap_sse2-request.o gmap_sse2-result.o gmap_sse2-output.o gmap_sse2-inbuffer.o gmap_sse2-samheader.o gmap_sse2-printbuffer.o gmap_sse2-outbuffer.o gmap_sse2-chimera.o gmap_sse2-datadir.o gmap_sse2-parserange.o gmap_sse2-getline.o gmap_sse2-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.sse2 gmapl_sse2-except.o gmapl_sse2-assert.o gmapl_sse2-mem.o gmapl_sse2-intlist.o gmapl_sse2-uintlist.o gmapl_sse2-uint8list.o gmapl_sse2-list.o gmapl_sse2-littleendian.o gmapl_sse2-bigendian.o gmapl_sse2-univinterval.o gmapl_sse2-interval.o gmapl_sse2-stopwatch.o gmapl_sse2-semaphore.o gmapl_sse2-access.o gmapl_sse2-filestring.o gmapl_sse2-iit-read-univ.o gmapl_sse2-iit-read.o gmapl_sse2-md5.o gmapl_sse2-bzip2.o gmapl_sse2-fopen.o gmapl_sse2-sequence.o gmapl_sse2-reader.o gmapl_sse2-genomicpos.o gmapl_sse2-compress.o gmapl_sse2-compress-write.o gmapl_sse2-gbuffer.o gmapl_sse2-genome.o gmapl_sse2-popcount.o gmapl_sse2-dinucl_bits.o gmapl_sse2-genome_canonical.o gmapl_sse2-genome-write.o gmapl_sse2-bitpack64-read.o gmapl_sse2-bitpack64-readtwo.o gmapl_sse2-indexdb.o gmapl_sse2-oligo.o gmapl_sse2-block.o gmapl_sse2-chrom.o gmapl_sse2-segmentpos.o gmapl_sse2-chrnum.o gmapl_sse2-uinttable_rh.o gmapl_sse2-uint8table_rh.o gmapl_sse2-gregion.o gmapl_sse2-match.o gmapl_sse2-matchpool.o gmapl_sse2-diagnostic.o gmapl_sse2-stage1.o gmapl_sse2-diag.o gmapl_sse2-diagpool.o gmapl_sse2-cmet.o gmapl_sse2-atoi.o gmapl_sse2-orderstat.o gmapl_sse2-oligoindex_hr.o gmapl_sse2-intron.o gmapl_sse2-maxent.o gmapl_sse2-maxent_hr.o gmapl_sse2-pair.o gmapl_sse2-pairpool.o gmapl_sse2-cellpool.o gmapl_sse2-stage2.o gmapl_sse2-doublelist.o gmapl_sse2-smooth.o gmapl_sse2-splicestringpool.o gmapl_sse2-splicetrie_build.o gmapl_sse2-splicetrie.o gmapl_sse2-boyer-moore.o gmapl_sse2-dynprog.o gmapl_sse2-dynprog_simd.o gmapl_sse2-dynprog_single.o gmapl_sse2-dynprog_genome.o gmapl_sse2-dynprog_cdna.o gmapl_sse2-dynprog_end.o gmapl_sse2-translation.o gmapl_sse2-pbinom.o gmapl_sse2-changepoint.o gmapl_sse2-stage3.o gmapl_sse2-request.o gmapl_sse2-result.o gmapl_sse2-output.o gmapl_sse2-inbuffer.o gmapl_sse2-samheader.o gmapl_sse2-printbuffer.o gmapl_sse2-outbuffer.o gmapl_sse2-chimera.o gmapl_sse2-datadir.o gmapl_sse2-parserange.o gmapl_sse2-getline.o gmapl_sse2-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.sse2 gsnap_sse2-except.o gsnap_sse2-assert.o gsnap_sse2-mem.o gsnap_sse2-intlist.o gsnap_sse2-uintlist.o gsnap_sse2-list.o gsnap_sse2-littleendian.o gsnap_sse2-bigendian.o gsnap_sse2-univinterval.o gsnap_sse2-interval.o gsnap_sse2-stopwatch.o gsnap_sse2-semaphore.o gsnap_sse2-access.o gsnap_sse2-filestring.o gsnap_sse2-iit-read-univ.o gsnap_sse2-iit-read.o gsnap_sse2-bzip2.o gsnap_sse2-reader.o gsnap_sse2-genomicpos.o gsnap_sse2-compress.o gsnap_sse2-genome.o gsnap_sse2-transcriptome.o gsnap_sse2-popcount.o gsnap_sse2-genomebits.o gsnap_sse2-genomebits_consec.o gsnap_sse2-genomebits_count.o gsnap_sse2-genomebits_kmer.o gsnap_sse2-genomebits_indel.o gsnap_sse2-genomebits_decode.o gsnap_sse2-genomebits_mismatches.o gsnap_sse2-genomebits_trim.o gsnap_sse2-dinucl_bits.o gsnap_sse2-genome_sites.o gsnap_sse2-bitpack64-read.o gsnap_sse2-bitpack64-readtwo.o gsnap_sse2-mergeinfo.o gsnap_sse2-merge-uint4.o gsnap_sse2-merge-diagonals-simd-uint4.o gsnap_sse2-indexdb.o gsnap_sse2-localdb-read.o gsnap_sse2-oligo.o gsnap_sse2-chrnum.o gsnap_sse2-maxent_hr.o gsnap_sse2-mapq.o gsnap_sse2-fopen.o gsnap_sse2-shortread.o gsnap_sse2-junction.o gsnap_sse2-concordance.o gsnap_sse2-simplepair.o gsnap_sse2-orderstat.o gsnap_sse2-intlistpool.o gsnap_sse2-uintlistpool.o gsnap_sse2-listpool.o gsnap_sse2-hitlistpool.o gsnap_sse2-pathpool.o gsnap_sse2-auxinfopool.o gsnap_sse2-intron.o gsnap_sse2-gbuffer.o gsnap_sse2-select64-common.o gsnap_sse2-select64-ones.o gsnap_sse2-select64-zeroes.o gsnap_sse2-ef64.o gsnap_sse2-nr-x.o gsnap_sse2-knownsplicing.o gsnap_sse2-knownindels.o gsnap_sse2-splice.o gsnap_sse2-indel.o gsnap_sse2-spliceendsgen.o gsnap_sse2-spliceends.o gsnap_sse2-bitpack64-access.o gsnap_sse2-trdiag.o gsnap_sse2-trdiagpool.o gsnap_sse2-tr-extension-search.o gsnap_sse2-univdiag.o gsnap_sse2-univdiagpool.o gsnap_sse2-sedgesort.o gsnap_sse2-auxinfo.o gsnap_sse2-altsplice.o gsnap_sse2-path.o gsnap_sse2-pathpair.o gsnap_sse2-path-solve.o gsnap_sse2-path-fusion.o gsnap_sse2-path-trim.o gsnap_sse2-path-eval.o gsnap_sse2-pathpair-eval.o gsnap_sse2-path-print-alignment.o gsnap_sse2-path-print-m8.o gsnap_sse2-path-print-sam.o gsnap_sse2-path-learn.o gsnap_sse2-method.o gsnap_sse2-doublelist.o gsnap_sse2-bitvector.o gsnap_sse2-transcriptpool.o gsnap_sse2-exon.o gsnap_sse2-transcript.o gsnap_sse2-trpathpool.o gsnap_sse2-trpath.o gsnap_sse2-trpath-solve.o gsnap_sse2-trpath-convert.o gsnap_sse2-transcriptome-search.o gsnap_sse2-vectorpool.o gsnap_sse2-repair.o gsnap_sse2-transcript-remap.o gsnap_sse2-transcript-velocity.o gsnap_sse2-intersect-small.o gsnap_sse2-intersect-uint2.o gsnap_sse2-intersect-approx-uint4.o gsnap_sse2-intersect-approx-indices-uint4.o gsnap_sse2-intersect-wdups-indices.o gsnap_sse2-intersect-lower-small.o gsnap_sse2-intersect-higher-small.o gsnap_sse2-intersect-indices-small.o gsnap_sse2-intersect-indices2-small.o gsnap_sse2-intersect-concordance-uint4.o gsnap_sse2-kmer-search.o gsnap_sse2-extension-search.o gsnap_sse2-repetitive.o gsnap_sse2-uint8table.o gsnap_sse2-uinttable.o gsnap_sse2-stage1hr.o gsnap_sse2-stage1hr-single.o gsnap_sse2-stage1hr-paired.o gsnap_sse2-uinttableuint.o gsnap_sse2-tableuint.o gsnap_sse2-single-cell.o gsnap_sse2-request.o gsnap_sse2-resulthr.o gsnap_sse2-output.o gsnap_sse2-inbuffer.o gsnap_sse2-samheader.o gsnap_sse2-printbuffer.o gsnap_sse2-outbuffer.o gsnap_sse2-datadir.o gsnap_sse2-parserange.o gsnap_sse2-getline.o gsnap_sse2-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -msse2 -mno-ssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.sse2 gsnapl_sse2-except.o gsnapl_sse2-assert.o gsnapl_sse2-mem.o gsnapl_sse2-intlist.o gsnapl_sse2-uintlist.o gsnapl_sse2-uint8list.o gsnapl_sse2-list.o gsnapl_sse2-littleendian.o gsnapl_sse2-bigendian.o gsnapl_sse2-univinterval.o gsnapl_sse2-interval.o gsnapl_sse2-stopwatch.o gsnapl_sse2-semaphore.o gsnapl_sse2-access.o gsnapl_sse2-filestring.o gsnapl_sse2-iit-read-univ.o gsnapl_sse2-iit-read.o gsnapl_sse2-bzip2.o gsnapl_sse2-reader.o gsnapl_sse2-genomicpos.o gsnapl_sse2-compress.o gsnapl_sse2-genome.o gsnapl_sse2-transcriptome.o gsnapl_sse2-popcount.o gsnapl_sse2-genomebits.o gsnapl_sse2-genomebits_consec.o gsnapl_sse2-genomebits_count.o gsnapl_sse2-genomebits_kmer.o gsnapl_sse2-genomebits_indel.o gsnapl_sse2-genomebits_decode.o gsnapl_sse2-genomebits_mismatches.o gsnapl_sse2-genomebits_trim.o gsnapl_sse2-dinucl_bits.o gsnapl_sse2-genome_sites.o gsnapl_sse2-bitpack64-read.o gsnapl_sse2-bitpack64-readtwo.o gsnapl_sse2-mergeinfo.o gsnapl_sse2-merge-diagonals-heap.o gsnapl_sse2-merge-uint8.o gsnapl_sse2-merge-diagonals-simd-uint8.o gsnapl_sse2-merge-uint4.o gsnapl_sse2-merge-diagonals-simd-uint4.o gsnapl_sse2-indexdb.o gsnapl_sse2-localdb-read.o gsnapl_sse2-oligo.o gsnapl_sse2-chrnum.o gsnapl_sse2-maxent_hr.o gsnapl_sse2-mapq.o gsnapl_sse2-fopen.o gsnapl_sse2-shortread.o gsnapl_sse2-junction.o gsnapl_sse2-concordance.o gsnapl_sse2-simplepair.o gsnapl_sse2-orderstat.o gsnapl_sse2-intlistpool.o gsnapl_sse2-uintlistpool.o gsnapl_sse2-uint8listpool.o gsnapl_sse2-listpool.o gsnapl_sse2-hitlistpool.o gsnapl_sse2-pathpool.o gsnapl_sse2-auxinfopool.o gsnapl_sse2-intron.o gsnapl_sse2-gbuffer.o gsnapl_sse2-select64-common.o gsnapl_sse2-select64-ones.o gsnapl_sse2-select64-zeroes.o gsnapl_sse2-ef64.o gsnapl_sse2-nr-x.o gsnapl_sse2-knownsplicing.o gsnapl_sse2-knownindels.o gsnapl_sse2-splice.o gsnapl_sse2-indel.o gsnapl_sse2-spliceendsgen.o gsnapl_sse2-spliceends.o gsnapl_sse2-bitpack64-access.o gsnapl_sse2-trdiag.o gsnapl_sse2-trdiagpool.o gsnapl_sse2-tr-extension-search.o gsnapl_sse2-univdiag.o gsnapl_sse2-univdiagpool.o gsnapl_sse2-sedgesort.o gsnapl_sse2-auxinfo.o gsnapl_sse2-altsplice.o gsnapl_sse2-path.o gsnapl_sse2-pathpair.o gsnapl_sse2-path-solve.o gsnapl_sse2-path-fusion.o gsnapl_sse2-path-trim.o gsnapl_sse2-path-eval.o gsnapl_sse2-pathpair-eval.o gsnapl_sse2-path-print-alignment.o gsnapl_sse2-path-print-m8.o gsnapl_sse2-path-print-sam.o gsnapl_sse2-path-learn.o gsnapl_sse2-method.o gsnapl_sse2-doublelist.o gsnapl_sse2-bitvector.o gsnapl_sse2-transcriptpool.o gsnapl_sse2-exon.o gsnapl_sse2-transcript.o gsnapl_sse2-trpathpool.o gsnapl_sse2-trpath.o gsnapl_sse2-trpath-solve.o gsnapl_sse2-trpath-convert.o gsnapl_sse2-transcriptome-search.o gsnapl_sse2-vectorpool.o gsnapl_sse2-repair.o gsnapl_sse2-transcript-remap.o gsnapl_sse2-transcript-velocity.o gsnapl_sse2-intersect-large.o gsnapl_sse2-intersect-small.o gsnapl_sse2-intersect-uint2.o gsnapl_sse2-intersect-approx-uint4.o gsnapl_sse2-intersect-approx-uint8.o gsnapl_sse2-intersect-approx-indices-uint8.o gsnapl_sse2-intersect-wdups-indices.o gsnapl_sse2-intersect-lower-large.o gsnapl_sse2-intersect-higher-large.o gsnapl_sse2-intersect-indices-small.o gsnapl_sse2-intersect-indices2-large.o gsnapl_sse2-intersect-indices-uint8.o gsnapl_sse2-intersect-concordance-uint8.o gsnapl_sse2-kmer-search.o gsnapl_sse2-extension-search.o gsnapl_sse2-repetitive.o gsnapl_sse2-uint8table.o gsnapl_sse2-stage1hr.o gsnapl_sse2-stage1hr-single.o gsnapl_sse2-stage1hr-paired.o gsnapl_sse2-uint8tableuint.o gsnapl_sse2-tableuint.o gsnapl_sse2-single-cell.o gsnapl_sse2-request.o gsnapl_sse2-resulthr.o gsnapl_sse2-output.o gsnapl_sse2-inbuffer.o gsnapl_sse2-samheader.o gsnapl_sse2-printbuffer.o gsnapl_sse2-outbuffer.o gsnapl_sse2-datadir.o gsnapl_sse2-parserange.o gsnapl_sse2-getline.o gsnapl_sse2-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/src'
Making all in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/util'
cp gmap_process.pl gmap_process
cp gmap_build.pl gmap_build
cp gmap_cat.pl gmap_cat
cp md_coords.pl md_coords
chmod +x gmap_process
chmod +x gmap_cat
chmod +x gmap_build
chmod +x md_coords
cp fa_coords.pl fa_coords
cp psl_splicesites.pl psl_splicesites
cp psl_introns.pl psl_introns
chmod +x fa_coords
cp psl_genes.pl psl_genes
chmod +x psl_splicesites
chmod +x psl_introns
cp ensembl_genes.pl ensembl_genes
chmod +x psl_genes
cp gtf_splicesites.pl gtf_splicesites
cp gtf_introns.pl gtf_introns
chmod +x ensembl_genes
cp gtf_genes.pl gtf_genes
chmod +x gtf_splicesites
chmod +x gtf_introns
cp gtf_transcript_splicesites.pl gtf_transcript_splicesites
chmod +x gtf_genes
cp gff3_splicesites.pl gff3_splicesites
chmod +x gtf_transcript_splicesites
cp gff3_introns.pl gff3_introns
chmod +x gff3_splicesites
chmod +x gff3_introns
cp gff3_genes.pl gff3_genes
cp dbsnp_iit.pl dbsnp_iit
cp gvf_iit.pl gvf_iit
cp vcf_iit.pl vcf_iit
chmod +x gff3_genes
chmod +x dbsnp_iit
chmod +x vcf_iit
chmod +x gvf_iit
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/util'
Making all in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/tests'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
dh_auto_build --builddir build_ssse3
	cd build_ssse3 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/src'
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/src'
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo '../../src/'`gmap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo '../../src/'`gmapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo '../../src/'`get-genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo '../../src/'`saca-k.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-localdb-write.o `test -f 'localdb-write.c' || echo '../../src/'`localdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo '../../src/'`tableuint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo '../../src/'`bytecoding.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo '../../src/'`sarray-write.c
In file included from ../../src/sarray-write.c:34:
../../src/sarray-write.c: In function ‘Sarray_write_csa’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:808:3: note: in expansion of macro ‘FREAD_UINT’
  808 |   FREAD_UINT(&sa_i,sa_fp);
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:815:5: note: in expansion of macro ‘FREAD_UINTS’
  815 |     FREAD_UINTS(read_buffer,RW_BATCH,sa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:828:5: note: in expansion of macro ‘FREAD_UINT’
  828 |     FREAD_UINT(&sa_i,sa_fp);
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1022:5: note: in expansion of macro ‘FREAD_UINTS’
 1022 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1033:5: note: in expansion of macro ‘FREAD_UINT’
 1033 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1064:5: note: in expansion of macro ‘FREAD_UINTS’
 1064 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1080:5: note: in expansion of macro ‘FREAD_UINT’
 1080 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1111:5: note: in expansion of macro ‘FREAD_UINTS’
 1111 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1112:5: note: in expansion of macro ‘FREAD_UINTS’
 1112 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1140:5: note: in expansion of macro ‘FREAD_UINT’
 1140 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1141:5: note: in expansion of macro ‘FREAD_UINT’
 1141 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
../../src/sarray-write.c: In function ‘Sarray_compute_lcp_bytes’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1246:5: note: in expansion of macro ‘FREAD_UINTS’
 1246 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1257:5: note: in expansion of macro ‘FREAD_UINT’
 1257 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1288:5: note: in expansion of macro ‘FREAD_UINTS’
 1288 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1304:5: note: in expansion of macro ‘FREAD_UINT’
 1304 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1335:5: note: in expansion of macro ‘FREAD_UINTS’
 1335 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1336:5: note: in expansion of macro ‘FREAD_UINTS’
 1336 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1370:5: note: in expansion of macro ‘FREAD_UINT’
 1370 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1371:5: note: in expansion of macro ‘FREAD_UINT’
 1371 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_discriminating_chars’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2318:3: note: in expansion of macro ‘FREAD_UINT’
 2318 |   FREAD_UINT(&SA_i_minus_1,fp); /* Initializes SA[0] */
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2321:5: note: in expansion of macro ‘FREAD_UINTS’
 2321 |     FREAD_UINTS(read_buffer,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2443:5: note: in expansion of macro ‘FREAD_UINT’
 2443 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo '../../src/'`gmapindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo '../../src/'`indexdb-cat.c
../../src/indexdb-cat.c: In function ‘main’:
../../src/indexdb-cat.c:823:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  823 |     fprintf(stderr,"Total number of offsets: %llu => pages file not required\n",total_noffsets);
      |                                              ~~~^                               ~~~~~~~~~~~~~~
      |                                                 |                               |
      |                                                 long long unsigned int          Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:827:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  827 |     fprintf(stderr,"Total number of offsets: %llu => pages file required\n",total_noffsets);
      |                                              ~~~^                           ~~~~~~~~~~~~~~
      |                                                 |                           |
      |                                                 long long unsigned int      Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:901:14: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |           ~~~^         ~~~~~~~~~~~~~~
      |              |         |
      |              |         Univcoord_T {aka long unsigned int}
      |              long long unsigned int
      |           %lu
../../src/indexdb-cat.c:901:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |                ~~~^                   ~~~~~~~~~~~~~~~~~~
      |                   |                   |
      |                   |                   Univcoord_T {aka long unsigned int}
      |                   long long unsigned int
      |                %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo '../../src/'`iit-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo '../../src/'`iit_store.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-except.o `test -f 'except.c' || echo '../../src/'`except.c
../../src/iit_store.c: In function ‘parse_fasta’:
../../src/iit_store.c:689:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  689 |       fprintf(stderr,"Assigning %llu to end\n",end);
      |                                 ~~~^           ~~~
      |                                    |           |
      |                                    |           Univcoord_T {aka long unsigned int}
      |                                    long long unsigned int
      |                                 %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo '../../src/'`iit_get.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo '../../src/'`iit_dump.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo '../../src/'`gsnap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo '../../src/'`gsnapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo '../../src/'`snpindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo '../../src/'`cmetindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo '../../src/'`atoiindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o trindex-trindex.o `test -f 'trindex.c' || echo '../../src/'`trindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmap_ssse3-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gmapl_ssse3-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnap_ssse3-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI -c -o gsnapl_ssse3-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cpuid cpuid-cpuid.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap gmap-cpuid.o gmap-gmap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-get-genome.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-saca-k.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-popcount.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-indexdb-cat.o  -lz -lbz2 -lm 
gcc    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-iit_store.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-iit_get.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-iit_dump.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-snpindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-cmetindex.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1257:46,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1264:22,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-atoiindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-popcount.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-bitpack64-readtwo.o trindex-transcriptome.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-trindex.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-dinucl_bits.o gmap_nosimd-genome_canonical.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-printbuffer.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-dinucl_bits.o gmapl_nosimd-genome_canonical.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-uint8table_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-printbuffer.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genomebits.o gsnap_nosimd-genomebits_consec.o gsnap_nosimd-genomebits_count.o gsnap_nosimd-genomebits_kmer.o gsnap_nosimd-genomebits_indel.o gsnap_nosimd-genomebits_decode.o gsnap_nosimd-genomebits_mismatches.o gsnap_nosimd-genomebits_trim.o gsnap_nosimd-dinucl_bits.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-mergeinfo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-localdb-read.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-junction.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-pathpool.o gsnap_nosimd-auxinfopool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-select64-common.o gsnap_nosimd-select64-ones.o gsnap_nosimd-select64-zeroes.o gsnap_nosimd-ef64.o gsnap_nosimd-nr-x.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-knownindels.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-spliceendsgen.o gsnap_nosimd-spliceends.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-trdiag.o gsnap_nosimd-trdiagpool.o gsnap_nosimd-tr-extension-search.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-auxinfo.o gsnap_nosimd-altsplice.o gsnap_nosimd-path.o gsnap_nosimd-pathpair.o gsnap_nosimd-path-solve.o gsnap_nosimd-path-fusion.o gsnap_nosimd-path-trim.o gsnap_nosimd-path-eval.o gsnap_nosimd-pathpair-eval.o gsnap_nosimd-path-print-alignment.o gsnap_nosimd-path-print-m8.o gsnap_nosimd-path-print-sam.o gsnap_nosimd-path-learn.o gsnap_nosimd-method.o gsnap_nosimd-doublelist.o gsnap_nosimd-bitvector.o gsnap_nosimd-transcriptpool.o gsnap_nosimd-exon.o gsnap_nosimd-transcript.o gsnap_nosimd-trpathpool.o gsnap_nosimd-trpath.o gsnap_nosimd-trpath-solve.o gsnap_nosimd-trpath-convert.o gsnap_nosimd-transcriptome-search.o gsnap_nosimd-vectorpool.o gsnap_nosimd-repair.o gsnap_nosimd-transcript-remap.o gsnap_nosimd-transcript-velocity.o gsnap_nosimd-intersect-small.o gsnap_nosimd-intersect-uint2.o gsnap_nosimd-intersect-approx-uint4.o gsnap_nosimd-intersect-approx-indices-uint4.o gsnap_nosimd-intersect-wdups-indices.o gsnap_nosimd-intersect-lower-small.o gsnap_nosimd-intersect-higher-small.o gsnap_nosimd-intersect-indices-small.o gsnap_nosimd-intersect-indices2-small.o gsnap_nosimd-intersect-concordance-uint4.o gsnap_nosimd-kmer-search.o gsnap_nosimd-extension-search.o gsnap_nosimd-repetitive.o gsnap_nosimd-uint8table.o gsnap_nosimd-uinttable.o gsnap_nosimd-stage1hr.o gsnap_nosimd-stage1hr-single.o gsnap_nosimd-stage1hr-paired.o gsnap_nosimd-uinttableuint.o gsnap_nosimd-tableuint.o gsnap_nosimd-single-cell.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-printbuffer.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genomebits.o gsnapl_nosimd-genomebits_consec.o gsnapl_nosimd-genomebits_count.o gsnapl_nosimd-genomebits_kmer.o gsnapl_nosimd-genomebits_indel.o gsnapl_nosimd-genomebits_decode.o gsnapl_nosimd-genomebits_mismatches.o gsnapl_nosimd-genomebits_trim.o gsnapl_nosimd-dinucl_bits.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-mergeinfo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-localdb-read.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-junction.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uintlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-pathpool.o gsnapl_nosimd-auxinfopool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-select64-common.o gsnapl_nosimd-select64-ones.o gsnapl_nosimd-select64-zeroes.o gsnapl_nosimd-ef64.o gsnapl_nosimd-nr-x.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-knownindels.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-spliceendsgen.o gsnapl_nosimd-spliceends.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-trdiag.o gsnapl_nosimd-trdiagpool.o gsnapl_nosimd-tr-extension-search.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-auxinfo.o gsnapl_nosimd-altsplice.o gsnapl_nosimd-path.o gsnapl_nosimd-pathpair.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-path-fusion.o gsnapl_nosimd-path-trim.o gsnapl_nosimd-path-eval.o gsnapl_nosimd-pathpair-eval.o gsnapl_nosimd-path-print-alignment.o gsnapl_nosimd-path-print-m8.o gsnapl_nosimd-path-print-sam.o gsnapl_nosimd-path-learn.o gsnapl_nosimd-method.o gsnapl_nosimd-doublelist.o gsnapl_nosimd-bitvector.o gsnapl_nosimd-transcriptpool.o gsnapl_nosimd-exon.o gsnapl_nosimd-transcript.o gsnapl_nosimd-trpathpool.o gsnapl_nosimd-trpath.o gsnapl_nosimd-trpath-solve.o gsnapl_nosimd-trpath-convert.o gsnapl_nosimd-transcriptome-search.o gsnapl_nosimd-vectorpool.o gsnapl_nosimd-repair.o gsnapl_nosimd-transcript-remap.o gsnapl_nosimd-transcript-velocity.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-intersect-small.o gsnapl_nosimd-intersect-uint2.o gsnapl_nosimd-intersect-approx-uint4.o gsnapl_nosimd-intersect-approx-uint8.o gsnapl_nosimd-intersect-approx-indices-uint8.o gsnapl_nosimd-intersect-wdups-indices.o gsnapl_nosimd-intersect-lower-large.o gsnapl_nosimd-intersect-higher-large.o gsnapl_nosimd-intersect-indices-small.o gsnapl_nosimd-intersect-indices2-large.o gsnapl_nosimd-intersect-indices-uint8.o gsnapl_nosimd-intersect-concordance-uint8.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-repetitive.o gsnapl_nosimd-uint8table.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-stage1hr-single.o gsnapl_nosimd-stage1hr-paired.o gsnapl_nosimd-uint8tableuint.o gsnapl_nosimd-tableuint.o gsnapl_nosimd-single-cell.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-printbuffer.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.ssse3 gmap_ssse3-except.o gmap_ssse3-assert.o gmap_ssse3-mem.o gmap_ssse3-intlist.o gmap_ssse3-uintlist.o gmap_ssse3-list.o gmap_ssse3-littleendian.o gmap_ssse3-bigendian.o gmap_ssse3-univinterval.o gmap_ssse3-interval.o gmap_ssse3-stopwatch.o gmap_ssse3-semaphore.o gmap_ssse3-access.o gmap_ssse3-filestring.o gmap_ssse3-iit-read-univ.o gmap_ssse3-iit-read.o gmap_ssse3-md5.o gmap_ssse3-bzip2.o gmap_ssse3-fopen.o gmap_ssse3-sequence.o gmap_ssse3-reader.o gmap_ssse3-genomicpos.o gmap_ssse3-compress.o gmap_ssse3-compress-write.o gmap_ssse3-gbuffer.o gmap_ssse3-genome.o gmap_ssse3-popcount.o gmap_ssse3-dinucl_bits.o gmap_ssse3-genome_canonical.o gmap_ssse3-genome-write.o gmap_ssse3-bitpack64-read.o gmap_ssse3-bitpack64-readtwo.o gmap_ssse3-indexdb.o gmap_ssse3-oligo.o gmap_ssse3-block.o gmap_ssse3-chrom.o gmap_ssse3-segmentpos.o gmap_ssse3-chrnum.o gmap_ssse3-uinttable_rh.o gmap_ssse3-gregion.o gmap_ssse3-match.o gmap_ssse3-matchpool.o gmap_ssse3-diagnostic.o gmap_ssse3-stage1.o gmap_ssse3-diag.o gmap_ssse3-diagpool.o gmap_ssse3-cmet.o gmap_ssse3-atoi.o gmap_ssse3-orderstat.o gmap_ssse3-oligoindex_hr.o gmap_ssse3-intron.o gmap_ssse3-maxent.o gmap_ssse3-maxent_hr.o gmap_ssse3-pair.o gmap_ssse3-pairpool.o gmap_ssse3-cellpool.o gmap_ssse3-stage2.o gmap_ssse3-doublelist.o gmap_ssse3-smooth.o gmap_ssse3-splicestringpool.o gmap_ssse3-splicetrie_build.o gmap_ssse3-splicetrie.o gmap_ssse3-boyer-moore.o gmap_ssse3-dynprog.o gmap_ssse3-dynprog_simd.o gmap_ssse3-dynprog_single.o gmap_ssse3-dynprog_genome.o gmap_ssse3-dynprog_cdna.o gmap_ssse3-dynprog_end.o gmap_ssse3-translation.o gmap_ssse3-pbinom.o gmap_ssse3-changepoint.o gmap_ssse3-stage3.o gmap_ssse3-request.o gmap_ssse3-result.o gmap_ssse3-output.o gmap_ssse3-inbuffer.o gmap_ssse3-samheader.o gmap_ssse3-printbuffer.o gmap_ssse3-outbuffer.o gmap_ssse3-chimera.o gmap_ssse3-datadir.o gmap_ssse3-parserange.o gmap_ssse3-getline.o gmap_ssse3-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.ssse3 gmapl_ssse3-except.o gmapl_ssse3-assert.o gmapl_ssse3-mem.o gmapl_ssse3-intlist.o gmapl_ssse3-uintlist.o gmapl_ssse3-uint8list.o gmapl_ssse3-list.o gmapl_ssse3-littleendian.o gmapl_ssse3-bigendian.o gmapl_ssse3-univinterval.o gmapl_ssse3-interval.o gmapl_ssse3-stopwatch.o gmapl_ssse3-semaphore.o gmapl_ssse3-access.o gmapl_ssse3-filestring.o gmapl_ssse3-iit-read-univ.o gmapl_ssse3-iit-read.o gmapl_ssse3-md5.o gmapl_ssse3-bzip2.o gmapl_ssse3-fopen.o gmapl_ssse3-sequence.o gmapl_ssse3-reader.o gmapl_ssse3-genomicpos.o gmapl_ssse3-compress.o gmapl_ssse3-compress-write.o gmapl_ssse3-gbuffer.o gmapl_ssse3-genome.o gmapl_ssse3-popcount.o gmapl_ssse3-dinucl_bits.o gmapl_ssse3-genome_canonical.o gmapl_ssse3-genome-write.o gmapl_ssse3-bitpack64-read.o gmapl_ssse3-bitpack64-readtwo.o gmapl_ssse3-indexdb.o gmapl_ssse3-oligo.o gmapl_ssse3-block.o gmapl_ssse3-chrom.o gmapl_ssse3-segmentpos.o gmapl_ssse3-chrnum.o gmapl_ssse3-uinttable_rh.o gmapl_ssse3-uint8table_rh.o gmapl_ssse3-gregion.o gmapl_ssse3-match.o gmapl_ssse3-matchpool.o gmapl_ssse3-diagnostic.o gmapl_ssse3-stage1.o gmapl_ssse3-diag.o gmapl_ssse3-diagpool.o gmapl_ssse3-cmet.o gmapl_ssse3-atoi.o gmapl_ssse3-orderstat.o gmapl_ssse3-oligoindex_hr.o gmapl_ssse3-intron.o gmapl_ssse3-maxent.o gmapl_ssse3-maxent_hr.o gmapl_ssse3-pair.o gmapl_ssse3-pairpool.o gmapl_ssse3-cellpool.o gmapl_ssse3-stage2.o gmapl_ssse3-doublelist.o gmapl_ssse3-smooth.o gmapl_ssse3-splicestringpool.o gmapl_ssse3-splicetrie_build.o gmapl_ssse3-splicetrie.o gmapl_ssse3-boyer-moore.o gmapl_ssse3-dynprog.o gmapl_ssse3-dynprog_simd.o gmapl_ssse3-dynprog_single.o gmapl_ssse3-dynprog_genome.o gmapl_ssse3-dynprog_cdna.o gmapl_ssse3-dynprog_end.o gmapl_ssse3-translation.o gmapl_ssse3-pbinom.o gmapl_ssse3-changepoint.o gmapl_ssse3-stage3.o gmapl_ssse3-request.o gmapl_ssse3-result.o gmapl_ssse3-output.o gmapl_ssse3-inbuffer.o gmapl_ssse3-samheader.o gmapl_ssse3-printbuffer.o gmapl_ssse3-outbuffer.o gmapl_ssse3-chimera.o gmapl_ssse3-datadir.o gmapl_ssse3-parserange.o gmapl_ssse3-getline.o gmapl_ssse3-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.ssse3 gsnap_ssse3-except.o gsnap_ssse3-assert.o gsnap_ssse3-mem.o gsnap_ssse3-intlist.o gsnap_ssse3-uintlist.o gsnap_ssse3-list.o gsnap_ssse3-littleendian.o gsnap_ssse3-bigendian.o gsnap_ssse3-univinterval.o gsnap_ssse3-interval.o gsnap_ssse3-stopwatch.o gsnap_ssse3-semaphore.o gsnap_ssse3-access.o gsnap_ssse3-filestring.o gsnap_ssse3-iit-read-univ.o gsnap_ssse3-iit-read.o gsnap_ssse3-bzip2.o gsnap_ssse3-reader.o gsnap_ssse3-genomicpos.o gsnap_ssse3-compress.o gsnap_ssse3-genome.o gsnap_ssse3-transcriptome.o gsnap_ssse3-popcount.o gsnap_ssse3-genomebits.o gsnap_ssse3-genomebits_consec.o gsnap_ssse3-genomebits_count.o gsnap_ssse3-genomebits_kmer.o gsnap_ssse3-genomebits_indel.o gsnap_ssse3-genomebits_decode.o gsnap_ssse3-genomebits_mismatches.o gsnap_ssse3-genomebits_trim.o gsnap_ssse3-dinucl_bits.o gsnap_ssse3-genome_sites.o gsnap_ssse3-bitpack64-read.o gsnap_ssse3-bitpack64-readtwo.o gsnap_ssse3-mergeinfo.o gsnap_ssse3-merge-uint4.o gsnap_ssse3-merge-diagonals-simd-uint4.o gsnap_ssse3-indexdb.o gsnap_ssse3-localdb-read.o gsnap_ssse3-oligo.o gsnap_ssse3-chrnum.o gsnap_ssse3-maxent_hr.o gsnap_ssse3-mapq.o gsnap_ssse3-fopen.o gsnap_ssse3-shortread.o gsnap_ssse3-junction.o gsnap_ssse3-concordance.o gsnap_ssse3-simplepair.o gsnap_ssse3-orderstat.o gsnap_ssse3-intlistpool.o gsnap_ssse3-uintlistpool.o gsnap_ssse3-listpool.o gsnap_ssse3-hitlistpool.o gsnap_ssse3-pathpool.o gsnap_ssse3-auxinfopool.o gsnap_ssse3-intron.o gsnap_ssse3-gbuffer.o gsnap_ssse3-select64-common.o gsnap_ssse3-select64-ones.o gsnap_ssse3-select64-zeroes.o gsnap_ssse3-ef64.o gsnap_ssse3-nr-x.o gsnap_ssse3-knownsplicing.o gsnap_ssse3-knownindels.o gsnap_ssse3-splice.o gsnap_ssse3-indel.o gsnap_ssse3-spliceendsgen.o gsnap_ssse3-spliceends.o gsnap_ssse3-bitpack64-access.o gsnap_ssse3-trdiag.o gsnap_ssse3-trdiagpool.o gsnap_ssse3-tr-extension-search.o gsnap_ssse3-univdiag.o gsnap_ssse3-univdiagpool.o gsnap_ssse3-sedgesort.o gsnap_ssse3-auxinfo.o gsnap_ssse3-altsplice.o gsnap_ssse3-path.o gsnap_ssse3-pathpair.o gsnap_ssse3-path-solve.o gsnap_ssse3-path-fusion.o gsnap_ssse3-path-trim.o gsnap_ssse3-path-eval.o gsnap_ssse3-pathpair-eval.o gsnap_ssse3-path-print-alignment.o gsnap_ssse3-path-print-m8.o gsnap_ssse3-path-print-sam.o gsnap_ssse3-path-learn.o gsnap_ssse3-method.o gsnap_ssse3-doublelist.o gsnap_ssse3-bitvector.o gsnap_ssse3-transcriptpool.o gsnap_ssse3-exon.o gsnap_ssse3-transcript.o gsnap_ssse3-trpathpool.o gsnap_ssse3-trpath.o gsnap_ssse3-trpath-solve.o gsnap_ssse3-trpath-convert.o gsnap_ssse3-transcriptome-search.o gsnap_ssse3-vectorpool.o gsnap_ssse3-repair.o gsnap_ssse3-transcript-remap.o gsnap_ssse3-transcript-velocity.o gsnap_ssse3-intersect-small.o gsnap_ssse3-intersect-uint2.o gsnap_ssse3-intersect-approx-uint4.o gsnap_ssse3-intersect-approx-indices-uint4.o gsnap_ssse3-intersect-wdups-indices.o gsnap_ssse3-intersect-lower-small.o gsnap_ssse3-intersect-higher-small.o gsnap_ssse3-intersect-indices-small.o gsnap_ssse3-intersect-indices2-small.o gsnap_ssse3-intersect-concordance-uint4.o gsnap_ssse3-kmer-search.o gsnap_ssse3-extension-search.o gsnap_ssse3-repetitive.o gsnap_ssse3-uint8table.o gsnap_ssse3-uinttable.o gsnap_ssse3-stage1hr.o gsnap_ssse3-stage1hr-single.o gsnap_ssse3-stage1hr-paired.o gsnap_ssse3-uinttableuint.o gsnap_ssse3-tableuint.o gsnap_ssse3-single-cell.o gsnap_ssse3-request.o gsnap_ssse3-resulthr.o gsnap_ssse3-output.o gsnap_ssse3-inbuffer.o gsnap_ssse3-samheader.o gsnap_ssse3-printbuffer.o gsnap_ssse3-outbuffer.o gsnap_ssse3-datadir.o gsnap_ssse3-parserange.o gsnap_ssse3-getline.o gsnap_ssse3-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -msse2 -mssse3 -mno-sse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -UHAVE_MM_EXTRACT_EPI64 -UHAVE_STTNI   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.ssse3 gsnapl_ssse3-except.o gsnapl_ssse3-assert.o gsnapl_ssse3-mem.o gsnapl_ssse3-intlist.o gsnapl_ssse3-uintlist.o gsnapl_ssse3-uint8list.o gsnapl_ssse3-list.o gsnapl_ssse3-littleendian.o gsnapl_ssse3-bigendian.o gsnapl_ssse3-univinterval.o gsnapl_ssse3-interval.o gsnapl_ssse3-stopwatch.o gsnapl_ssse3-semaphore.o gsnapl_ssse3-access.o gsnapl_ssse3-filestring.o gsnapl_ssse3-iit-read-univ.o gsnapl_ssse3-iit-read.o gsnapl_ssse3-bzip2.o gsnapl_ssse3-reader.o gsnapl_ssse3-genomicpos.o gsnapl_ssse3-compress.o gsnapl_ssse3-genome.o gsnapl_ssse3-transcriptome.o gsnapl_ssse3-popcount.o gsnapl_ssse3-genomebits.o gsnapl_ssse3-genomebits_consec.o gsnapl_ssse3-genomebits_count.o gsnapl_ssse3-genomebits_kmer.o gsnapl_ssse3-genomebits_indel.o gsnapl_ssse3-genomebits_decode.o gsnapl_ssse3-genomebits_mismatches.o gsnapl_ssse3-genomebits_trim.o gsnapl_ssse3-dinucl_bits.o gsnapl_ssse3-genome_sites.o gsnapl_ssse3-bitpack64-read.o gsnapl_ssse3-bitpack64-readtwo.o gsnapl_ssse3-mergeinfo.o gsnapl_ssse3-merge-diagonals-heap.o gsnapl_ssse3-merge-uint8.o gsnapl_ssse3-merge-diagonals-simd-uint8.o gsnapl_ssse3-merge-uint4.o gsnapl_ssse3-merge-diagonals-simd-uint4.o gsnapl_ssse3-indexdb.o gsnapl_ssse3-localdb-read.o gsnapl_ssse3-oligo.o gsnapl_ssse3-chrnum.o gsnapl_ssse3-maxent_hr.o gsnapl_ssse3-mapq.o gsnapl_ssse3-fopen.o gsnapl_ssse3-shortread.o gsnapl_ssse3-junction.o gsnapl_ssse3-concordance.o gsnapl_ssse3-simplepair.o gsnapl_ssse3-orderstat.o gsnapl_ssse3-intlistpool.o gsnapl_ssse3-uintlistpool.o gsnapl_ssse3-uint8listpool.o gsnapl_ssse3-listpool.o gsnapl_ssse3-hitlistpool.o gsnapl_ssse3-pathpool.o gsnapl_ssse3-auxinfopool.o gsnapl_ssse3-intron.o gsnapl_ssse3-gbuffer.o gsnapl_ssse3-select64-common.o gsnapl_ssse3-select64-ones.o gsnapl_ssse3-select64-zeroes.o gsnapl_ssse3-ef64.o gsnapl_ssse3-nr-x.o gsnapl_ssse3-knownsplicing.o gsnapl_ssse3-knownindels.o gsnapl_ssse3-splice.o gsnapl_ssse3-indel.o gsnapl_ssse3-spliceendsgen.o gsnapl_ssse3-spliceends.o gsnapl_ssse3-bitpack64-access.o gsnapl_ssse3-trdiag.o gsnapl_ssse3-trdiagpool.o gsnapl_ssse3-tr-extension-search.o gsnapl_ssse3-univdiag.o gsnapl_ssse3-univdiagpool.o gsnapl_ssse3-sedgesort.o gsnapl_ssse3-auxinfo.o gsnapl_ssse3-altsplice.o gsnapl_ssse3-path.o gsnapl_ssse3-pathpair.o gsnapl_ssse3-path-solve.o gsnapl_ssse3-path-fusion.o gsnapl_ssse3-path-trim.o gsnapl_ssse3-path-eval.o gsnapl_ssse3-pathpair-eval.o gsnapl_ssse3-path-print-alignment.o gsnapl_ssse3-path-print-m8.o gsnapl_ssse3-path-print-sam.o gsnapl_ssse3-path-learn.o gsnapl_ssse3-method.o gsnapl_ssse3-doublelist.o gsnapl_ssse3-bitvector.o gsnapl_ssse3-transcriptpool.o gsnapl_ssse3-exon.o gsnapl_ssse3-transcript.o gsnapl_ssse3-trpathpool.o gsnapl_ssse3-trpath.o gsnapl_ssse3-trpath-solve.o gsnapl_ssse3-trpath-convert.o gsnapl_ssse3-transcriptome-search.o gsnapl_ssse3-vectorpool.o gsnapl_ssse3-repair.o gsnapl_ssse3-transcript-remap.o gsnapl_ssse3-transcript-velocity.o gsnapl_ssse3-intersect-large.o gsnapl_ssse3-intersect-small.o gsnapl_ssse3-intersect-uint2.o gsnapl_ssse3-intersect-approx-uint4.o gsnapl_ssse3-intersect-approx-uint8.o gsnapl_ssse3-intersect-approx-indices-uint8.o gsnapl_ssse3-intersect-wdups-indices.o gsnapl_ssse3-intersect-lower-large.o gsnapl_ssse3-intersect-higher-large.o gsnapl_ssse3-intersect-indices-small.o gsnapl_ssse3-intersect-indices2-large.o gsnapl_ssse3-intersect-indices-uint8.o gsnapl_ssse3-intersect-concordance-uint8.o gsnapl_ssse3-kmer-search.o gsnapl_ssse3-extension-search.o gsnapl_ssse3-repetitive.o gsnapl_ssse3-uint8table.o gsnapl_ssse3-stage1hr.o gsnapl_ssse3-stage1hr-single.o gsnapl_ssse3-stage1hr-paired.o gsnapl_ssse3-uint8tableuint.o gsnapl_ssse3-tableuint.o gsnapl_ssse3-single-cell.o gsnapl_ssse3-request.o gsnapl_ssse3-resulthr.o gsnapl_ssse3-output.o gsnapl_ssse3-inbuffer.o gsnapl_ssse3-samheader.o gsnapl_ssse3-printbuffer.o gsnapl_ssse3-outbuffer.o gsnapl_ssse3-datadir.o gsnapl_ssse3-parserange.o gsnapl_ssse3-getline.o gsnapl_ssse3-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/src'
Making all in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/util'
cp gmap_process.pl gmap_process
cp gmap_build.pl gmap_build
cp gmap_cat.pl gmap_cat
cp md_coords.pl md_coords
chmod +x gmap_build
chmod +x gmap_process
chmod +x gmap_cat
chmod +x md_coords
cp fa_coords.pl fa_coords
cp psl_splicesites.pl psl_splicesites
chmod +x fa_coords
cp psl_introns.pl psl_introns
cp psl_genes.pl psl_genes
chmod +x psl_introns
cp ensembl_genes.pl ensembl_genes
chmod +x psl_splicesites
chmod +x psl_genes
chmod +x ensembl_genes
cp gtf_splicesites.pl gtf_splicesites
cp gtf_introns.pl gtf_introns
cp gtf_genes.pl gtf_genes
chmod +x gtf_splicesites
chmod +x gtf_introns
chmod +x gtf_genes
cp gtf_transcript_splicesites.pl gtf_transcript_splicesites
cp gff3_splicesites.pl gff3_splicesites
chmod +x gtf_transcript_splicesites
chmod +x gff3_splicesites
cp gff3_introns.pl gff3_introns
cp gff3_genes.pl gff3_genes
cp dbsnp_iit.pl dbsnp_iit
chmod +x gff3_introns
cp gvf_iit.pl gvf_iit
chmod +x dbsnp_iit
cp vcf_iit.pl vcf_iit
chmod +x gvf_iit
chmod +x gff3_genes
chmod +x vcf_iit
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/util'
Making all in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/tests'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3'
dh_auto_build --builddir build_sse41
	cd build_sse41 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_sse41'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/src'
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/src'
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo '../../src/'`gmap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo '../../src/'`gmapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo '../../src/'`get-genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo '../../src/'`saca-k.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-localdb-write.o `test -f 'localdb-write.c' || echo '../../src/'`localdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo '../../src/'`tableuint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo '../../src/'`bytecoding.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo '../../src/'`sarray-write.c
In file included from ../../src/sarray-write.c:34:
../../src/sarray-write.c: In function ‘Sarray_write_csa’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:808:3: note: in expansion of macro ‘FREAD_UINT’
  808 |   FREAD_UINT(&sa_i,sa_fp);
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:815:5: note: in expansion of macro ‘FREAD_UINTS’
  815 |     FREAD_UINTS(read_buffer,RW_BATCH,sa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:828:5: note: in expansion of macro ‘FREAD_UINT’
  828 |     FREAD_UINT(&sa_i,sa_fp);
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1022:5: note: in expansion of macro ‘FREAD_UINTS’
 1022 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1033:5: note: in expansion of macro ‘FREAD_UINT’
 1033 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1064:5: note: in expansion of macro ‘FREAD_UINTS’
 1064 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1080:5: note: in expansion of macro ‘FREAD_UINT’
 1080 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1111:5: note: in expansion of macro ‘FREAD_UINTS’
 1111 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1112:5: note: in expansion of macro ‘FREAD_UINTS’
 1112 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1140:5: note: in expansion of macro ‘FREAD_UINT’
 1140 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1141:5: note: in expansion of macro ‘FREAD_UINT’
 1141 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp_bytes’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1246:5: note: in expansion of macro ‘FREAD_UINTS’
 1246 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1257:5: note: in expansion of macro ‘FREAD_UINT’
 1257 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1288:5: note: in expansion of macro ‘FREAD_UINTS’
 1288 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1304:5: note: in expansion of macro ‘FREAD_UINT’
 1304 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1335:5: note: in expansion of macro ‘FREAD_UINTS’
 1335 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1336:5: note: in expansion of macro ‘FREAD_UINTS’
 1336 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1370:5: note: in expansion of macro ‘FREAD_UINT’
 1370 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1371:5: note: in expansion of macro ‘FREAD_UINT’
 1371 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_discriminating_chars’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2318:3: note: in expansion of macro ‘FREAD_UINT’
 2318 |   FREAD_UINT(&SA_i_minus_1,fp); /* Initializes SA[0] */
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2321:5: note: in expansion of macro ‘FREAD_UINTS’
 2321 |     FREAD_UINTS(read_buffer,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2443:5: note: in expansion of macro ‘FREAD_UINT’
 2443 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo '../../src/'`gmapindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo '../../src/'`indexdb-cat.c
../../src/indexdb-cat.c: In function ‘main’:
../../src/indexdb-cat.c:823:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  823 |     fprintf(stderr,"Total number of offsets: %llu => pages file not required\n",total_noffsets);
      |                                              ~~~^                               ~~~~~~~~~~~~~~
      |                                                 |                               |
      |                                                 long long unsigned int          Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:827:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  827 |     fprintf(stderr,"Total number of offsets: %llu => pages file required\n",total_noffsets);
      |                                              ~~~^                           ~~~~~~~~~~~~~~
      |                                                 |                           |
      |                                                 long long unsigned int      Univcoord_T {aka long unsigned int}
      |                                              %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-except.o `test -f 'except.c' || echo '../../src/'`except.c
../../src/indexdb-cat.c:901:14: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |           ~~~^         ~~~~~~~~~~~~~~
      |              |         |
      |              |         Univcoord_T {aka long unsigned int}
      |              long long unsigned int
      |           %lu
../../src/indexdb-cat.c:901:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |                ~~~^                   ~~~~~~~~~~~~~~~~~~
      |                   |                   |
      |                   |                   Univcoord_T {aka long unsigned int}
      |                   long long unsigned int
      |                %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo '../../src/'`iit-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo '../../src/'`iit_store.c
../../src/iit_store.c: In function ‘parse_fasta’:
../../src/iit_store.c:689:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  689 |       fprintf(stderr,"Assigning %llu to end\n",end);
      |                                 ~~~^           ~~~
      |                                    |           |
      |                                    |           Univcoord_T {aka long unsigned int}
      |                                    long long unsigned int
      |                                 %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo '../../src/'`iit_get.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo '../../src/'`iit_dump.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo '../../src/'`gsnap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo '../../src/'`gsnapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo '../../src/'`snpindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo '../../src/'`cmetindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo '../../src/'`atoiindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-trindex.o `test -f 'trindex.c' || echo '../../src/'`trindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse41-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse41-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse41-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse41-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cpuid cpuid-cpuid.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap gmap-cpuid.o gmap-gmap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-get-genome.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-saca-k.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-popcount.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-indexdb-cat.o  -lz -lbz2 -lm 
gcc    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-iit_store.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-iit_get.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-iit_dump.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-snpindex.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1257:46,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1264:22,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-cmetindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-atoiindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-popcount.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-bitpack64-readtwo.o trindex-transcriptome.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-trindex.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-dinucl_bits.o gmap_nosimd-genome_canonical.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-printbuffer.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-dinucl_bits.o gmapl_nosimd-genome_canonical.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-uint8table_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-printbuffer.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genomebits.o gsnap_nosimd-genomebits_consec.o gsnap_nosimd-genomebits_count.o gsnap_nosimd-genomebits_kmer.o gsnap_nosimd-genomebits_indel.o gsnap_nosimd-genomebits_decode.o gsnap_nosimd-genomebits_mismatches.o gsnap_nosimd-genomebits_trim.o gsnap_nosimd-dinucl_bits.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-mergeinfo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-localdb-read.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-junction.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-pathpool.o gsnap_nosimd-auxinfopool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-select64-common.o gsnap_nosimd-select64-ones.o gsnap_nosimd-select64-zeroes.o gsnap_nosimd-ef64.o gsnap_nosimd-nr-x.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-knownindels.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-spliceendsgen.o gsnap_nosimd-spliceends.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-trdiag.o gsnap_nosimd-trdiagpool.o gsnap_nosimd-tr-extension-search.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-auxinfo.o gsnap_nosimd-altsplice.o gsnap_nosimd-path.o gsnap_nosimd-pathpair.o gsnap_nosimd-path-solve.o gsnap_nosimd-path-fusion.o gsnap_nosimd-path-trim.o gsnap_nosimd-path-eval.o gsnap_nosimd-pathpair-eval.o gsnap_nosimd-path-print-alignment.o gsnap_nosimd-path-print-m8.o gsnap_nosimd-path-print-sam.o gsnap_nosimd-path-learn.o gsnap_nosimd-method.o gsnap_nosimd-doublelist.o gsnap_nosimd-bitvector.o gsnap_nosimd-transcriptpool.o gsnap_nosimd-exon.o gsnap_nosimd-transcript.o gsnap_nosimd-trpathpool.o gsnap_nosimd-trpath.o gsnap_nosimd-trpath-solve.o gsnap_nosimd-trpath-convert.o gsnap_nosimd-transcriptome-search.o gsnap_nosimd-vectorpool.o gsnap_nosimd-repair.o gsnap_nosimd-transcript-remap.o gsnap_nosimd-transcript-velocity.o gsnap_nosimd-intersect-small.o gsnap_nosimd-intersect-uint2.o gsnap_nosimd-intersect-approx-uint4.o gsnap_nosimd-intersect-approx-indices-uint4.o gsnap_nosimd-intersect-wdups-indices.o gsnap_nosimd-intersect-lower-small.o gsnap_nosimd-intersect-higher-small.o gsnap_nosimd-intersect-indices-small.o gsnap_nosimd-intersect-indices2-small.o gsnap_nosimd-intersect-concordance-uint4.o gsnap_nosimd-kmer-search.o gsnap_nosimd-extension-search.o gsnap_nosimd-repetitive.o gsnap_nosimd-uint8table.o gsnap_nosimd-uinttable.o gsnap_nosimd-stage1hr.o gsnap_nosimd-stage1hr-single.o gsnap_nosimd-stage1hr-paired.o gsnap_nosimd-uinttableuint.o gsnap_nosimd-tableuint.o gsnap_nosimd-single-cell.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-printbuffer.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genomebits.o gsnapl_nosimd-genomebits_consec.o gsnapl_nosimd-genomebits_count.o gsnapl_nosimd-genomebits_kmer.o gsnapl_nosimd-genomebits_indel.o gsnapl_nosimd-genomebits_decode.o gsnapl_nosimd-genomebits_mismatches.o gsnapl_nosimd-genomebits_trim.o gsnapl_nosimd-dinucl_bits.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-mergeinfo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-localdb-read.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-junction.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uintlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-pathpool.o gsnapl_nosimd-auxinfopool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-select64-common.o gsnapl_nosimd-select64-ones.o gsnapl_nosimd-select64-zeroes.o gsnapl_nosimd-ef64.o gsnapl_nosimd-nr-x.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-knownindels.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-spliceendsgen.o gsnapl_nosimd-spliceends.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-trdiag.o gsnapl_nosimd-trdiagpool.o gsnapl_nosimd-tr-extension-search.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-auxinfo.o gsnapl_nosimd-altsplice.o gsnapl_nosimd-path.o gsnapl_nosimd-pathpair.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-path-fusion.o gsnapl_nosimd-path-trim.o gsnapl_nosimd-path-eval.o gsnapl_nosimd-pathpair-eval.o gsnapl_nosimd-path-print-alignment.o gsnapl_nosimd-path-print-m8.o gsnapl_nosimd-path-print-sam.o gsnapl_nosimd-path-learn.o gsnapl_nosimd-method.o gsnapl_nosimd-doublelist.o gsnapl_nosimd-bitvector.o gsnapl_nosimd-transcriptpool.o gsnapl_nosimd-exon.o gsnapl_nosimd-transcript.o gsnapl_nosimd-trpathpool.o gsnapl_nosimd-trpath.o gsnapl_nosimd-trpath-solve.o gsnapl_nosimd-trpath-convert.o gsnapl_nosimd-transcriptome-search.o gsnapl_nosimd-vectorpool.o gsnapl_nosimd-repair.o gsnapl_nosimd-transcript-remap.o gsnapl_nosimd-transcript-velocity.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-intersect-small.o gsnapl_nosimd-intersect-uint2.o gsnapl_nosimd-intersect-approx-uint4.o gsnapl_nosimd-intersect-approx-uint8.o gsnapl_nosimd-intersect-approx-indices-uint8.o gsnapl_nosimd-intersect-wdups-indices.o gsnapl_nosimd-intersect-lower-large.o gsnapl_nosimd-intersect-higher-large.o gsnapl_nosimd-intersect-indices-small.o gsnapl_nosimd-intersect-indices2-large.o gsnapl_nosimd-intersect-indices-uint8.o gsnapl_nosimd-intersect-concordance-uint8.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-repetitive.o gsnapl_nosimd-uint8table.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-stage1hr-single.o gsnapl_nosimd-stage1hr-paired.o gsnapl_nosimd-uint8tableuint.o gsnapl_nosimd-tableuint.o gsnapl_nosimd-single-cell.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-printbuffer.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.sse41 gmap_sse41-except.o gmap_sse41-assert.o gmap_sse41-mem.o gmap_sse41-intlist.o gmap_sse41-uintlist.o gmap_sse41-list.o gmap_sse41-littleendian.o gmap_sse41-bigendian.o gmap_sse41-univinterval.o gmap_sse41-interval.o gmap_sse41-stopwatch.o gmap_sse41-semaphore.o gmap_sse41-access.o gmap_sse41-filestring.o gmap_sse41-iit-read-univ.o gmap_sse41-iit-read.o gmap_sse41-md5.o gmap_sse41-bzip2.o gmap_sse41-fopen.o gmap_sse41-sequence.o gmap_sse41-reader.o gmap_sse41-genomicpos.o gmap_sse41-compress.o gmap_sse41-compress-write.o gmap_sse41-gbuffer.o gmap_sse41-genome.o gmap_sse41-popcount.o gmap_sse41-dinucl_bits.o gmap_sse41-genome_canonical.o gmap_sse41-genome-write.o gmap_sse41-bitpack64-read.o gmap_sse41-bitpack64-readtwo.o gmap_sse41-indexdb.o gmap_sse41-oligo.o gmap_sse41-block.o gmap_sse41-chrom.o gmap_sse41-segmentpos.o gmap_sse41-chrnum.o gmap_sse41-uinttable_rh.o gmap_sse41-gregion.o gmap_sse41-match.o gmap_sse41-matchpool.o gmap_sse41-diagnostic.o gmap_sse41-stage1.o gmap_sse41-diag.o gmap_sse41-diagpool.o gmap_sse41-cmet.o gmap_sse41-atoi.o gmap_sse41-orderstat.o gmap_sse41-oligoindex_hr.o gmap_sse41-intron.o gmap_sse41-maxent.o gmap_sse41-maxent_hr.o gmap_sse41-pair.o gmap_sse41-pairpool.o gmap_sse41-cellpool.o gmap_sse41-stage2.o gmap_sse41-doublelist.o gmap_sse41-smooth.o gmap_sse41-splicestringpool.o gmap_sse41-splicetrie_build.o gmap_sse41-splicetrie.o gmap_sse41-boyer-moore.o gmap_sse41-dynprog.o gmap_sse41-dynprog_simd.o gmap_sse41-dynprog_single.o gmap_sse41-dynprog_genome.o gmap_sse41-dynprog_cdna.o gmap_sse41-dynprog_end.o gmap_sse41-translation.o gmap_sse41-pbinom.o gmap_sse41-changepoint.o gmap_sse41-stage3.o gmap_sse41-request.o gmap_sse41-result.o gmap_sse41-output.o gmap_sse41-inbuffer.o gmap_sse41-samheader.o gmap_sse41-printbuffer.o gmap_sse41-outbuffer.o gmap_sse41-chimera.o gmap_sse41-datadir.o gmap_sse41-parserange.o gmap_sse41-getline.o gmap_sse41-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.sse41 gmapl_sse41-except.o gmapl_sse41-assert.o gmapl_sse41-mem.o gmapl_sse41-intlist.o gmapl_sse41-uintlist.o gmapl_sse41-uint8list.o gmapl_sse41-list.o gmapl_sse41-littleendian.o gmapl_sse41-bigendian.o gmapl_sse41-univinterval.o gmapl_sse41-interval.o gmapl_sse41-stopwatch.o gmapl_sse41-semaphore.o gmapl_sse41-access.o gmapl_sse41-filestring.o gmapl_sse41-iit-read-univ.o gmapl_sse41-iit-read.o gmapl_sse41-md5.o gmapl_sse41-bzip2.o gmapl_sse41-fopen.o gmapl_sse41-sequence.o gmapl_sse41-reader.o gmapl_sse41-genomicpos.o gmapl_sse41-compress.o gmapl_sse41-compress-write.o gmapl_sse41-gbuffer.o gmapl_sse41-genome.o gmapl_sse41-popcount.o gmapl_sse41-dinucl_bits.o gmapl_sse41-genome_canonical.o gmapl_sse41-genome-write.o gmapl_sse41-bitpack64-read.o gmapl_sse41-bitpack64-readtwo.o gmapl_sse41-indexdb.o gmapl_sse41-oligo.o gmapl_sse41-block.o gmapl_sse41-chrom.o gmapl_sse41-segmentpos.o gmapl_sse41-chrnum.o gmapl_sse41-uinttable_rh.o gmapl_sse41-uint8table_rh.o gmapl_sse41-gregion.o gmapl_sse41-match.o gmapl_sse41-matchpool.o gmapl_sse41-diagnostic.o gmapl_sse41-stage1.o gmapl_sse41-diag.o gmapl_sse41-diagpool.o gmapl_sse41-cmet.o gmapl_sse41-atoi.o gmapl_sse41-orderstat.o gmapl_sse41-oligoindex_hr.o gmapl_sse41-intron.o gmapl_sse41-maxent.o gmapl_sse41-maxent_hr.o gmapl_sse41-pair.o gmapl_sse41-pairpool.o gmapl_sse41-cellpool.o gmapl_sse41-stage2.o gmapl_sse41-doublelist.o gmapl_sse41-smooth.o gmapl_sse41-splicestringpool.o gmapl_sse41-splicetrie_build.o gmapl_sse41-splicetrie.o gmapl_sse41-boyer-moore.o gmapl_sse41-dynprog.o gmapl_sse41-dynprog_simd.o gmapl_sse41-dynprog_single.o gmapl_sse41-dynprog_genome.o gmapl_sse41-dynprog_cdna.o gmapl_sse41-dynprog_end.o gmapl_sse41-translation.o gmapl_sse41-pbinom.o gmapl_sse41-changepoint.o gmapl_sse41-stage3.o gmapl_sse41-request.o gmapl_sse41-result.o gmapl_sse41-output.o gmapl_sse41-inbuffer.o gmapl_sse41-samheader.o gmapl_sse41-printbuffer.o gmapl_sse41-outbuffer.o gmapl_sse41-chimera.o gmapl_sse41-datadir.o gmapl_sse41-parserange.o gmapl_sse41-getline.o gmapl_sse41-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.sse41 gsnap_sse41-except.o gsnap_sse41-assert.o gsnap_sse41-mem.o gsnap_sse41-intlist.o gsnap_sse41-uintlist.o gsnap_sse41-list.o gsnap_sse41-littleendian.o gsnap_sse41-bigendian.o gsnap_sse41-univinterval.o gsnap_sse41-interval.o gsnap_sse41-stopwatch.o gsnap_sse41-semaphore.o gsnap_sse41-access.o gsnap_sse41-filestring.o gsnap_sse41-iit-read-univ.o gsnap_sse41-iit-read.o gsnap_sse41-bzip2.o gsnap_sse41-reader.o gsnap_sse41-genomicpos.o gsnap_sse41-compress.o gsnap_sse41-genome.o gsnap_sse41-transcriptome.o gsnap_sse41-popcount.o gsnap_sse41-genomebits.o gsnap_sse41-genomebits_consec.o gsnap_sse41-genomebits_count.o gsnap_sse41-genomebits_kmer.o gsnap_sse41-genomebits_indel.o gsnap_sse41-genomebits_decode.o gsnap_sse41-genomebits_mismatches.o gsnap_sse41-genomebits_trim.o gsnap_sse41-dinucl_bits.o gsnap_sse41-genome_sites.o gsnap_sse41-bitpack64-read.o gsnap_sse41-bitpack64-readtwo.o gsnap_sse41-mergeinfo.o gsnap_sse41-merge-uint4.o gsnap_sse41-merge-diagonals-simd-uint4.o gsnap_sse41-indexdb.o gsnap_sse41-localdb-read.o gsnap_sse41-oligo.o gsnap_sse41-chrnum.o gsnap_sse41-maxent_hr.o gsnap_sse41-mapq.o gsnap_sse41-fopen.o gsnap_sse41-shortread.o gsnap_sse41-junction.o gsnap_sse41-concordance.o gsnap_sse41-simplepair.o gsnap_sse41-orderstat.o gsnap_sse41-intlistpool.o gsnap_sse41-uintlistpool.o gsnap_sse41-listpool.o gsnap_sse41-hitlistpool.o gsnap_sse41-pathpool.o gsnap_sse41-auxinfopool.o gsnap_sse41-intron.o gsnap_sse41-gbuffer.o gsnap_sse41-select64-common.o gsnap_sse41-select64-ones.o gsnap_sse41-select64-zeroes.o gsnap_sse41-ef64.o gsnap_sse41-nr-x.o gsnap_sse41-knownsplicing.o gsnap_sse41-knownindels.o gsnap_sse41-splice.o gsnap_sse41-indel.o gsnap_sse41-spliceendsgen.o gsnap_sse41-spliceends.o gsnap_sse41-bitpack64-access.o gsnap_sse41-trdiag.o gsnap_sse41-trdiagpool.o gsnap_sse41-tr-extension-search.o gsnap_sse41-univdiag.o gsnap_sse41-univdiagpool.o gsnap_sse41-sedgesort.o gsnap_sse41-auxinfo.o gsnap_sse41-altsplice.o gsnap_sse41-path.o gsnap_sse41-pathpair.o gsnap_sse41-path-solve.o gsnap_sse41-path-fusion.o gsnap_sse41-path-trim.o gsnap_sse41-path-eval.o gsnap_sse41-pathpair-eval.o gsnap_sse41-path-print-alignment.o gsnap_sse41-path-print-m8.o gsnap_sse41-path-print-sam.o gsnap_sse41-path-learn.o gsnap_sse41-method.o gsnap_sse41-doublelist.o gsnap_sse41-bitvector.o gsnap_sse41-transcriptpool.o gsnap_sse41-exon.o gsnap_sse41-transcript.o gsnap_sse41-trpathpool.o gsnap_sse41-trpath.o gsnap_sse41-trpath-solve.o gsnap_sse41-trpath-convert.o gsnap_sse41-transcriptome-search.o gsnap_sse41-vectorpool.o gsnap_sse41-repair.o gsnap_sse41-transcript-remap.o gsnap_sse41-transcript-velocity.o gsnap_sse41-intersect-small.o gsnap_sse41-intersect-uint2.o gsnap_sse41-intersect-approx-uint4.o gsnap_sse41-intersect-approx-indices-uint4.o gsnap_sse41-intersect-wdups-indices.o gsnap_sse41-intersect-lower-small.o gsnap_sse41-intersect-higher-small.o gsnap_sse41-intersect-indices-small.o gsnap_sse41-intersect-indices2-small.o gsnap_sse41-intersect-concordance-uint4.o gsnap_sse41-kmer-search.o gsnap_sse41-extension-search.o gsnap_sse41-repetitive.o gsnap_sse41-uint8table.o gsnap_sse41-uinttable.o gsnap_sse41-stage1hr.o gsnap_sse41-stage1hr-single.o gsnap_sse41-stage1hr-paired.o gsnap_sse41-uinttableuint.o gsnap_sse41-tableuint.o gsnap_sse41-single-cell.o gsnap_sse41-request.o gsnap_sse41-resulthr.o gsnap_sse41-output.o gsnap_sse41-inbuffer.o gsnap_sse41-samheader.o gsnap_sse41-printbuffer.o gsnap_sse41-outbuffer.o gsnap_sse41-datadir.o gsnap_sse41-parserange.o gsnap_sse41-getline.o gsnap_sse41-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -msse2 -mssse3 -msse4.1 -mno-sse4.2 -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.sse41 gsnapl_sse41-except.o gsnapl_sse41-assert.o gsnapl_sse41-mem.o gsnapl_sse41-intlist.o gsnapl_sse41-uintlist.o gsnapl_sse41-uint8list.o gsnapl_sse41-list.o gsnapl_sse41-littleendian.o gsnapl_sse41-bigendian.o gsnapl_sse41-univinterval.o gsnapl_sse41-interval.o gsnapl_sse41-stopwatch.o gsnapl_sse41-semaphore.o gsnapl_sse41-access.o gsnapl_sse41-filestring.o gsnapl_sse41-iit-read-univ.o gsnapl_sse41-iit-read.o gsnapl_sse41-bzip2.o gsnapl_sse41-reader.o gsnapl_sse41-genomicpos.o gsnapl_sse41-compress.o gsnapl_sse41-genome.o gsnapl_sse41-transcriptome.o gsnapl_sse41-popcount.o gsnapl_sse41-genomebits.o gsnapl_sse41-genomebits_consec.o gsnapl_sse41-genomebits_count.o gsnapl_sse41-genomebits_kmer.o gsnapl_sse41-genomebits_indel.o gsnapl_sse41-genomebits_decode.o gsnapl_sse41-genomebits_mismatches.o gsnapl_sse41-genomebits_trim.o gsnapl_sse41-dinucl_bits.o gsnapl_sse41-genome_sites.o gsnapl_sse41-bitpack64-read.o gsnapl_sse41-bitpack64-readtwo.o gsnapl_sse41-mergeinfo.o gsnapl_sse41-merge-diagonals-heap.o gsnapl_sse41-merge-uint8.o gsnapl_sse41-merge-diagonals-simd-uint8.o gsnapl_sse41-merge-uint4.o gsnapl_sse41-merge-diagonals-simd-uint4.o gsnapl_sse41-indexdb.o gsnapl_sse41-localdb-read.o gsnapl_sse41-oligo.o gsnapl_sse41-chrnum.o gsnapl_sse41-maxent_hr.o gsnapl_sse41-mapq.o gsnapl_sse41-fopen.o gsnapl_sse41-shortread.o gsnapl_sse41-junction.o gsnapl_sse41-concordance.o gsnapl_sse41-simplepair.o gsnapl_sse41-orderstat.o gsnapl_sse41-intlistpool.o gsnapl_sse41-uintlistpool.o gsnapl_sse41-uint8listpool.o gsnapl_sse41-listpool.o gsnapl_sse41-hitlistpool.o gsnapl_sse41-pathpool.o gsnapl_sse41-auxinfopool.o gsnapl_sse41-intron.o gsnapl_sse41-gbuffer.o gsnapl_sse41-select64-common.o gsnapl_sse41-select64-ones.o gsnapl_sse41-select64-zeroes.o gsnapl_sse41-ef64.o gsnapl_sse41-nr-x.o gsnapl_sse41-knownsplicing.o gsnapl_sse41-knownindels.o gsnapl_sse41-splice.o gsnapl_sse41-indel.o gsnapl_sse41-spliceendsgen.o gsnapl_sse41-spliceends.o gsnapl_sse41-bitpack64-access.o gsnapl_sse41-trdiag.o gsnapl_sse41-trdiagpool.o gsnapl_sse41-tr-extension-search.o gsnapl_sse41-univdiag.o gsnapl_sse41-univdiagpool.o gsnapl_sse41-sedgesort.o gsnapl_sse41-auxinfo.o gsnapl_sse41-altsplice.o gsnapl_sse41-path.o gsnapl_sse41-pathpair.o gsnapl_sse41-path-solve.o gsnapl_sse41-path-fusion.o gsnapl_sse41-path-trim.o gsnapl_sse41-path-eval.o gsnapl_sse41-pathpair-eval.o gsnapl_sse41-path-print-alignment.o gsnapl_sse41-path-print-m8.o gsnapl_sse41-path-print-sam.o gsnapl_sse41-path-learn.o gsnapl_sse41-method.o gsnapl_sse41-doublelist.o gsnapl_sse41-bitvector.o gsnapl_sse41-transcriptpool.o gsnapl_sse41-exon.o gsnapl_sse41-transcript.o gsnapl_sse41-trpathpool.o gsnapl_sse41-trpath.o gsnapl_sse41-trpath-solve.o gsnapl_sse41-trpath-convert.o gsnapl_sse41-transcriptome-search.o gsnapl_sse41-vectorpool.o gsnapl_sse41-repair.o gsnapl_sse41-transcript-remap.o gsnapl_sse41-transcript-velocity.o gsnapl_sse41-intersect-large.o gsnapl_sse41-intersect-small.o gsnapl_sse41-intersect-uint2.o gsnapl_sse41-intersect-approx-uint4.o gsnapl_sse41-intersect-approx-uint8.o gsnapl_sse41-intersect-approx-indices-uint8.o gsnapl_sse41-intersect-wdups-indices.o gsnapl_sse41-intersect-lower-large.o gsnapl_sse41-intersect-higher-large.o gsnapl_sse41-intersect-indices-small.o gsnapl_sse41-intersect-indices2-large.o gsnapl_sse41-intersect-indices-uint8.o gsnapl_sse41-intersect-concordance-uint8.o gsnapl_sse41-kmer-search.o gsnapl_sse41-extension-search.o gsnapl_sse41-repetitive.o gsnapl_sse41-uint8table.o gsnapl_sse41-stage1hr.o gsnapl_sse41-stage1hr-single.o gsnapl_sse41-stage1hr-paired.o gsnapl_sse41-uint8tableuint.o gsnapl_sse41-tableuint.o gsnapl_sse41-single-cell.o gsnapl_sse41-request.o gsnapl_sse41-resulthr.o gsnapl_sse41-output.o gsnapl_sse41-inbuffer.o gsnapl_sse41-samheader.o gsnapl_sse41-printbuffer.o gsnapl_sse41-outbuffer.o gsnapl_sse41-datadir.o gsnapl_sse41-parserange.o gsnapl_sse41-getline.o gsnapl_sse41-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/src'
Making all in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/util'
cp gmap_process.pl gmap_process
cp gmap_build.pl gmap_build
cp gmap_cat.pl gmap_cat
cp md_coords.pl md_coords
chmod +x gmap_process
chmod +x gmap_build
chmod +x gmap_cat
cp fa_coords.pl fa_coords
cp psl_splicesites.pl psl_splicesites
chmod +x md_coords
cp psl_introns.pl psl_introns
chmod +x fa_coords
chmod +x psl_splicesites
cp psl_genes.pl psl_genes
chmod +x psl_introns
cp ensembl_genes.pl ensembl_genes
cp gtf_splicesites.pl gtf_splicesites
chmod +x psl_genes
cp gtf_introns.pl gtf_introns
chmod +x ensembl_genes
chmod +x gtf_splicesites
cp gtf_genes.pl gtf_genes
chmod +x gtf_introns
cp gtf_transcript_splicesites.pl gtf_transcript_splicesites
cp gff3_splicesites.pl gff3_splicesites
cp gff3_introns.pl gff3_introns
chmod +x gtf_genes
chmod +x gtf_transcript_splicesites
chmod +x gff3_splicesites
chmod +x gff3_introns
cp gff3_genes.pl gff3_genes
cp dbsnp_iit.pl dbsnp_iit
cp gvf_iit.pl gvf_iit
cp vcf_iit.pl vcf_iit
chmod +x gff3_genes
chmod +x dbsnp_iit
chmod +x gvf_iit
chmod +x vcf_iit
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/util'
Making all in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/tests'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41'
dh_auto_build --builddir build_sse42
	cd build_sse42 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_sse42'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/src'
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/src'
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo '../../src/'`gmap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo '../../src/'`gmapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo '../../src/'`get-genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo '../../src/'`saca-k.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-localdb-write.o `test -f 'localdb-write.c' || echo '../../src/'`localdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo '../../src/'`tableuint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo '../../src/'`bytecoding.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo '../../src/'`sarray-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
In file included from ../../src/sarray-write.c:34:
../../src/sarray-write.c: In function ‘Sarray_write_csa’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:808:3: note: in expansion of macro ‘FREAD_UINT’
  808 |   FREAD_UINT(&sa_i,sa_fp);
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:815:5: note: in expansion of macro ‘FREAD_UINTS’
  815 |     FREAD_UINTS(read_buffer,RW_BATCH,sa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:828:5: note: in expansion of macro ‘FREAD_UINT’
  828 |     FREAD_UINT(&sa_i,sa_fp);
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1022:5: note: in expansion of macro ‘FREAD_UINTS’
 1022 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1033:5: note: in expansion of macro ‘FREAD_UINT’
 1033 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1064:5: note: in expansion of macro ‘FREAD_UINTS’
 1064 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1080:5: note: in expansion of macro ‘FREAD_UINT’
 1080 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1111:5: note: in expansion of macro ‘FREAD_UINTS’
 1111 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1112:5: note: in expansion of macro ‘FREAD_UINTS’
 1112 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1140:5: note: in expansion of macro ‘FREAD_UINT’
 1140 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1141:5: note: in expansion of macro ‘FREAD_UINT’
 1141 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp_bytes’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1246:5: note: in expansion of macro ‘FREAD_UINTS’
 1246 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1257:5: note: in expansion of macro ‘FREAD_UINT’
 1257 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1288:5: note: in expansion of macro ‘FREAD_UINTS’
 1288 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1304:5: note: in expansion of macro ‘FREAD_UINT’
 1304 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1335:5: note: in expansion of macro ‘FREAD_UINTS’
 1335 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1336:5: note: in expansion of macro ‘FREAD_UINTS’
 1336 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1370:5: note: in expansion of macro ‘FREAD_UINT’
 1370 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1371:5: note: in expansion of macro ‘FREAD_UINT’
 1371 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_discriminating_chars’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2318:3: note: in expansion of macro ‘FREAD_UINT’
 2318 |   FREAD_UINT(&SA_i_minus_1,fp); /* Initializes SA[0] */
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2321:5: note: in expansion of macro ‘FREAD_UINTS’
 2321 |     FREAD_UINTS(read_buffer,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2443:5: note: in expansion of macro ‘FREAD_UINT’
 2443 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo '../../src/'`gmapindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo '../../src/'`indexdb-cat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-except.o `test -f 'except.c' || echo '../../src/'`except.c
../../src/indexdb-cat.c: In function ‘main’:
../../src/indexdb-cat.c:823:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  823 |     fprintf(stderr,"Total number of offsets: %llu => pages file not required\n",total_noffsets);
      |                                              ~~~^                               ~~~~~~~~~~~~~~
      |                                                 |                               |
      |                                                 long long unsigned int          Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:827:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  827 |     fprintf(stderr,"Total number of offsets: %llu => pages file required\n",total_noffsets);
      |                                              ~~~^                           ~~~~~~~~~~~~~~
      |                                                 |                           |
      |                                                 long long unsigned int      Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:901:14: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |           ~~~^         ~~~~~~~~~~~~~~
      |              |         |
      |              |         Univcoord_T {aka long unsigned int}
      |              long long unsigned int
      |           %lu
../../src/indexdb-cat.c:901:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |                ~~~^                   ~~~~~~~~~~~~~~~~~~
      |                   |                   |
      |                   |                   Univcoord_T {aka long unsigned int}
      |                   long long unsigned int
      |                %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo '../../src/'`iit-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo '../../src/'`iit_store.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-except.o `test -f 'except.c' || echo '../../src/'`except.c
../../src/iit_store.c: In function ‘parse_fasta’:
../../src/iit_store.c:689:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  689 |       fprintf(stderr,"Assigning %llu to end\n",end);
      |                                 ~~~^           ~~~
      |                                    |           |
      |                                    |           Univcoord_T {aka long unsigned int}
      |                                    long long unsigned int
      |                                 %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo '../../src/'`iit_get.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo '../../src/'`iit_dump.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo '../../src/'`gsnap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo '../../src/'`gsnapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo '../../src/'`snpindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo '../../src/'`cmetindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo '../../src/'`atoiindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-trindex.o `test -f 'trindex.c' || echo '../../src/'`trindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_sse42-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_sse42-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_sse42-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_sse42-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cpuid cpuid-cpuid.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap gmap-cpuid.o gmap-gmap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-get-genome.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-saca-k.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-popcount.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-indexdb-cat.o  -lz -lbz2 -lm 
gcc    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-iit_store.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-iit_get.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-iit_dump.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-snpindex.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1257:46,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1264:22,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-cmetindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-atoiindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-popcount.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-bitpack64-readtwo.o trindex-transcriptome.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-trindex.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-dinucl_bits.o gmap_nosimd-genome_canonical.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-printbuffer.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-dinucl_bits.o gmapl_nosimd-genome_canonical.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-uint8table_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-printbuffer.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genomebits.o gsnap_nosimd-genomebits_consec.o gsnap_nosimd-genomebits_count.o gsnap_nosimd-genomebits_kmer.o gsnap_nosimd-genomebits_indel.o gsnap_nosimd-genomebits_decode.o gsnap_nosimd-genomebits_mismatches.o gsnap_nosimd-genomebits_trim.o gsnap_nosimd-dinucl_bits.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-mergeinfo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-localdb-read.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-junction.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-pathpool.o gsnap_nosimd-auxinfopool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-select64-common.o gsnap_nosimd-select64-ones.o gsnap_nosimd-select64-zeroes.o gsnap_nosimd-ef64.o gsnap_nosimd-nr-x.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-knownindels.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-spliceendsgen.o gsnap_nosimd-spliceends.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-trdiag.o gsnap_nosimd-trdiagpool.o gsnap_nosimd-tr-extension-search.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-auxinfo.o gsnap_nosimd-altsplice.o gsnap_nosimd-path.o gsnap_nosimd-pathpair.o gsnap_nosimd-path-solve.o gsnap_nosimd-path-fusion.o gsnap_nosimd-path-trim.o gsnap_nosimd-path-eval.o gsnap_nosimd-pathpair-eval.o gsnap_nosimd-path-print-alignment.o gsnap_nosimd-path-print-m8.o gsnap_nosimd-path-print-sam.o gsnap_nosimd-path-learn.o gsnap_nosimd-method.o gsnap_nosimd-doublelist.o gsnap_nosimd-bitvector.o gsnap_nosimd-transcriptpool.o gsnap_nosimd-exon.o gsnap_nosimd-transcript.o gsnap_nosimd-trpathpool.o gsnap_nosimd-trpath.o gsnap_nosimd-trpath-solve.o gsnap_nosimd-trpath-convert.o gsnap_nosimd-transcriptome-search.o gsnap_nosimd-vectorpool.o gsnap_nosimd-repair.o gsnap_nosimd-transcript-remap.o gsnap_nosimd-transcript-velocity.o gsnap_nosimd-intersect-small.o gsnap_nosimd-intersect-uint2.o gsnap_nosimd-intersect-approx-uint4.o gsnap_nosimd-intersect-approx-indices-uint4.o gsnap_nosimd-intersect-wdups-indices.o gsnap_nosimd-intersect-lower-small.o gsnap_nosimd-intersect-higher-small.o gsnap_nosimd-intersect-indices-small.o gsnap_nosimd-intersect-indices2-small.o gsnap_nosimd-intersect-concordance-uint4.o gsnap_nosimd-kmer-search.o gsnap_nosimd-extension-search.o gsnap_nosimd-repetitive.o gsnap_nosimd-uint8table.o gsnap_nosimd-uinttable.o gsnap_nosimd-stage1hr.o gsnap_nosimd-stage1hr-single.o gsnap_nosimd-stage1hr-paired.o gsnap_nosimd-uinttableuint.o gsnap_nosimd-tableuint.o gsnap_nosimd-single-cell.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-printbuffer.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genomebits.o gsnapl_nosimd-genomebits_consec.o gsnapl_nosimd-genomebits_count.o gsnapl_nosimd-genomebits_kmer.o gsnapl_nosimd-genomebits_indel.o gsnapl_nosimd-genomebits_decode.o gsnapl_nosimd-genomebits_mismatches.o gsnapl_nosimd-genomebits_trim.o gsnapl_nosimd-dinucl_bits.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-mergeinfo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-localdb-read.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-junction.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uintlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-pathpool.o gsnapl_nosimd-auxinfopool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-select64-common.o gsnapl_nosimd-select64-ones.o gsnapl_nosimd-select64-zeroes.o gsnapl_nosimd-ef64.o gsnapl_nosimd-nr-x.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-knownindels.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-spliceendsgen.o gsnapl_nosimd-spliceends.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-trdiag.o gsnapl_nosimd-trdiagpool.o gsnapl_nosimd-tr-extension-search.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-auxinfo.o gsnapl_nosimd-altsplice.o gsnapl_nosimd-path.o gsnapl_nosimd-pathpair.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-path-fusion.o gsnapl_nosimd-path-trim.o gsnapl_nosimd-path-eval.o gsnapl_nosimd-pathpair-eval.o gsnapl_nosimd-path-print-alignment.o gsnapl_nosimd-path-print-m8.o gsnapl_nosimd-path-print-sam.o gsnapl_nosimd-path-learn.o gsnapl_nosimd-method.o gsnapl_nosimd-doublelist.o gsnapl_nosimd-bitvector.o gsnapl_nosimd-transcriptpool.o gsnapl_nosimd-exon.o gsnapl_nosimd-transcript.o gsnapl_nosimd-trpathpool.o gsnapl_nosimd-trpath.o gsnapl_nosimd-trpath-solve.o gsnapl_nosimd-trpath-convert.o gsnapl_nosimd-transcriptome-search.o gsnapl_nosimd-vectorpool.o gsnapl_nosimd-repair.o gsnapl_nosimd-transcript-remap.o gsnapl_nosimd-transcript-velocity.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-intersect-small.o gsnapl_nosimd-intersect-uint2.o gsnapl_nosimd-intersect-approx-uint4.o gsnapl_nosimd-intersect-approx-uint8.o gsnapl_nosimd-intersect-approx-indices-uint8.o gsnapl_nosimd-intersect-wdups-indices.o gsnapl_nosimd-intersect-lower-large.o gsnapl_nosimd-intersect-higher-large.o gsnapl_nosimd-intersect-indices-small.o gsnapl_nosimd-intersect-indices2-large.o gsnapl_nosimd-intersect-indices-uint8.o gsnapl_nosimd-intersect-concordance-uint8.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-repetitive.o gsnapl_nosimd-uint8table.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-stage1hr-single.o gsnapl_nosimd-stage1hr-paired.o gsnapl_nosimd-uint8tableuint.o gsnapl_nosimd-tableuint.o gsnapl_nosimd-single-cell.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-printbuffer.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.sse42 gmap_sse42-except.o gmap_sse42-assert.o gmap_sse42-mem.o gmap_sse42-intlist.o gmap_sse42-uintlist.o gmap_sse42-list.o gmap_sse42-littleendian.o gmap_sse42-bigendian.o gmap_sse42-univinterval.o gmap_sse42-interval.o gmap_sse42-stopwatch.o gmap_sse42-semaphore.o gmap_sse42-access.o gmap_sse42-filestring.o gmap_sse42-iit-read-univ.o gmap_sse42-iit-read.o gmap_sse42-md5.o gmap_sse42-bzip2.o gmap_sse42-fopen.o gmap_sse42-sequence.o gmap_sse42-reader.o gmap_sse42-genomicpos.o gmap_sse42-compress.o gmap_sse42-compress-write.o gmap_sse42-gbuffer.o gmap_sse42-genome.o gmap_sse42-popcount.o gmap_sse42-dinucl_bits.o gmap_sse42-genome_canonical.o gmap_sse42-genome-write.o gmap_sse42-bitpack64-read.o gmap_sse42-bitpack64-readtwo.o gmap_sse42-indexdb.o gmap_sse42-oligo.o gmap_sse42-block.o gmap_sse42-chrom.o gmap_sse42-segmentpos.o gmap_sse42-chrnum.o gmap_sse42-uinttable_rh.o gmap_sse42-gregion.o gmap_sse42-match.o gmap_sse42-matchpool.o gmap_sse42-diagnostic.o gmap_sse42-stage1.o gmap_sse42-diag.o gmap_sse42-diagpool.o gmap_sse42-cmet.o gmap_sse42-atoi.o gmap_sse42-orderstat.o gmap_sse42-oligoindex_hr.o gmap_sse42-intron.o gmap_sse42-maxent.o gmap_sse42-maxent_hr.o gmap_sse42-pair.o gmap_sse42-pairpool.o gmap_sse42-cellpool.o gmap_sse42-stage2.o gmap_sse42-doublelist.o gmap_sse42-smooth.o gmap_sse42-splicestringpool.o gmap_sse42-splicetrie_build.o gmap_sse42-splicetrie.o gmap_sse42-boyer-moore.o gmap_sse42-dynprog.o gmap_sse42-dynprog_simd.o gmap_sse42-dynprog_single.o gmap_sse42-dynprog_genome.o gmap_sse42-dynprog_cdna.o gmap_sse42-dynprog_end.o gmap_sse42-translation.o gmap_sse42-pbinom.o gmap_sse42-changepoint.o gmap_sse42-stage3.o gmap_sse42-request.o gmap_sse42-result.o gmap_sse42-output.o gmap_sse42-inbuffer.o gmap_sse42-samheader.o gmap_sse42-printbuffer.o gmap_sse42-outbuffer.o gmap_sse42-chimera.o gmap_sse42-datadir.o gmap_sse42-parserange.o gmap_sse42-getline.o gmap_sse42-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.sse42 gmapl_sse42-except.o gmapl_sse42-assert.o gmapl_sse42-mem.o gmapl_sse42-intlist.o gmapl_sse42-uintlist.o gmapl_sse42-uint8list.o gmapl_sse42-list.o gmapl_sse42-littleendian.o gmapl_sse42-bigendian.o gmapl_sse42-univinterval.o gmapl_sse42-interval.o gmapl_sse42-stopwatch.o gmapl_sse42-semaphore.o gmapl_sse42-access.o gmapl_sse42-filestring.o gmapl_sse42-iit-read-univ.o gmapl_sse42-iit-read.o gmapl_sse42-md5.o gmapl_sse42-bzip2.o gmapl_sse42-fopen.o gmapl_sse42-sequence.o gmapl_sse42-reader.o gmapl_sse42-genomicpos.o gmapl_sse42-compress.o gmapl_sse42-compress-write.o gmapl_sse42-gbuffer.o gmapl_sse42-genome.o gmapl_sse42-popcount.o gmapl_sse42-dinucl_bits.o gmapl_sse42-genome_canonical.o gmapl_sse42-genome-write.o gmapl_sse42-bitpack64-read.o gmapl_sse42-bitpack64-readtwo.o gmapl_sse42-indexdb.o gmapl_sse42-oligo.o gmapl_sse42-block.o gmapl_sse42-chrom.o gmapl_sse42-segmentpos.o gmapl_sse42-chrnum.o gmapl_sse42-uinttable_rh.o gmapl_sse42-uint8table_rh.o gmapl_sse42-gregion.o gmapl_sse42-match.o gmapl_sse42-matchpool.o gmapl_sse42-diagnostic.o gmapl_sse42-stage1.o gmapl_sse42-diag.o gmapl_sse42-diagpool.o gmapl_sse42-cmet.o gmapl_sse42-atoi.o gmapl_sse42-orderstat.o gmapl_sse42-oligoindex_hr.o gmapl_sse42-intron.o gmapl_sse42-maxent.o gmapl_sse42-maxent_hr.o gmapl_sse42-pair.o gmapl_sse42-pairpool.o gmapl_sse42-cellpool.o gmapl_sse42-stage2.o gmapl_sse42-doublelist.o gmapl_sse42-smooth.o gmapl_sse42-splicestringpool.o gmapl_sse42-splicetrie_build.o gmapl_sse42-splicetrie.o gmapl_sse42-boyer-moore.o gmapl_sse42-dynprog.o gmapl_sse42-dynprog_simd.o gmapl_sse42-dynprog_single.o gmapl_sse42-dynprog_genome.o gmapl_sse42-dynprog_cdna.o gmapl_sse42-dynprog_end.o gmapl_sse42-translation.o gmapl_sse42-pbinom.o gmapl_sse42-changepoint.o gmapl_sse42-stage3.o gmapl_sse42-request.o gmapl_sse42-result.o gmapl_sse42-output.o gmapl_sse42-inbuffer.o gmapl_sse42-samheader.o gmapl_sse42-printbuffer.o gmapl_sse42-outbuffer.o gmapl_sse42-chimera.o gmapl_sse42-datadir.o gmapl_sse42-parserange.o gmapl_sse42-getline.o gmapl_sse42-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.sse42 gsnap_sse42-except.o gsnap_sse42-assert.o gsnap_sse42-mem.o gsnap_sse42-intlist.o gsnap_sse42-uintlist.o gsnap_sse42-list.o gsnap_sse42-littleendian.o gsnap_sse42-bigendian.o gsnap_sse42-univinterval.o gsnap_sse42-interval.o gsnap_sse42-stopwatch.o gsnap_sse42-semaphore.o gsnap_sse42-access.o gsnap_sse42-filestring.o gsnap_sse42-iit-read-univ.o gsnap_sse42-iit-read.o gsnap_sse42-bzip2.o gsnap_sse42-reader.o gsnap_sse42-genomicpos.o gsnap_sse42-compress.o gsnap_sse42-genome.o gsnap_sse42-transcriptome.o gsnap_sse42-popcount.o gsnap_sse42-genomebits.o gsnap_sse42-genomebits_consec.o gsnap_sse42-genomebits_count.o gsnap_sse42-genomebits_kmer.o gsnap_sse42-genomebits_indel.o gsnap_sse42-genomebits_decode.o gsnap_sse42-genomebits_mismatches.o gsnap_sse42-genomebits_trim.o gsnap_sse42-dinucl_bits.o gsnap_sse42-genome_sites.o gsnap_sse42-bitpack64-read.o gsnap_sse42-bitpack64-readtwo.o gsnap_sse42-mergeinfo.o gsnap_sse42-merge-uint4.o gsnap_sse42-merge-diagonals-simd-uint4.o gsnap_sse42-indexdb.o gsnap_sse42-localdb-read.o gsnap_sse42-oligo.o gsnap_sse42-chrnum.o gsnap_sse42-maxent_hr.o gsnap_sse42-mapq.o gsnap_sse42-fopen.o gsnap_sse42-shortread.o gsnap_sse42-junction.o gsnap_sse42-concordance.o gsnap_sse42-simplepair.o gsnap_sse42-orderstat.o gsnap_sse42-intlistpool.o gsnap_sse42-uintlistpool.o gsnap_sse42-listpool.o gsnap_sse42-hitlistpool.o gsnap_sse42-pathpool.o gsnap_sse42-auxinfopool.o gsnap_sse42-intron.o gsnap_sse42-gbuffer.o gsnap_sse42-select64-common.o gsnap_sse42-select64-ones.o gsnap_sse42-select64-zeroes.o gsnap_sse42-ef64.o gsnap_sse42-nr-x.o gsnap_sse42-knownsplicing.o gsnap_sse42-knownindels.o gsnap_sse42-splice.o gsnap_sse42-indel.o gsnap_sse42-spliceendsgen.o gsnap_sse42-spliceends.o gsnap_sse42-bitpack64-access.o gsnap_sse42-trdiag.o gsnap_sse42-trdiagpool.o gsnap_sse42-tr-extension-search.o gsnap_sse42-univdiag.o gsnap_sse42-univdiagpool.o gsnap_sse42-sedgesort.o gsnap_sse42-auxinfo.o gsnap_sse42-altsplice.o gsnap_sse42-path.o gsnap_sse42-pathpair.o gsnap_sse42-path-solve.o gsnap_sse42-path-fusion.o gsnap_sse42-path-trim.o gsnap_sse42-path-eval.o gsnap_sse42-pathpair-eval.o gsnap_sse42-path-print-alignment.o gsnap_sse42-path-print-m8.o gsnap_sse42-path-print-sam.o gsnap_sse42-path-learn.o gsnap_sse42-method.o gsnap_sse42-doublelist.o gsnap_sse42-bitvector.o gsnap_sse42-transcriptpool.o gsnap_sse42-exon.o gsnap_sse42-transcript.o gsnap_sse42-trpathpool.o gsnap_sse42-trpath.o gsnap_sse42-trpath-solve.o gsnap_sse42-trpath-convert.o gsnap_sse42-transcriptome-search.o gsnap_sse42-vectorpool.o gsnap_sse42-repair.o gsnap_sse42-transcript-remap.o gsnap_sse42-transcript-velocity.o gsnap_sse42-intersect-small.o gsnap_sse42-intersect-uint2.o gsnap_sse42-intersect-approx-uint4.o gsnap_sse42-intersect-approx-indices-uint4.o gsnap_sse42-intersect-wdups-indices.o gsnap_sse42-intersect-lower-small.o gsnap_sse42-intersect-higher-small.o gsnap_sse42-intersect-indices-small.o gsnap_sse42-intersect-indices2-small.o gsnap_sse42-intersect-concordance-uint4.o gsnap_sse42-kmer-search.o gsnap_sse42-extension-search.o gsnap_sse42-repetitive.o gsnap_sse42-uint8table.o gsnap_sse42-uinttable.o gsnap_sse42-stage1hr.o gsnap_sse42-stage1hr-single.o gsnap_sse42-stage1hr-paired.o gsnap_sse42-uinttableuint.o gsnap_sse42-tableuint.o gsnap_sse42-single-cell.o gsnap_sse42-request.o gsnap_sse42-resulthr.o gsnap_sse42-output.o gsnap_sse42-inbuffer.o gsnap_sse42-samheader.o gsnap_sse42-printbuffer.o gsnap_sse42-outbuffer.o gsnap_sse42-datadir.o gsnap_sse42-parserange.o gsnap_sse42-getline.o gsnap_sse42-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mabm -mbmi -mno-avx2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.sse42 gsnapl_sse42-except.o gsnapl_sse42-assert.o gsnapl_sse42-mem.o gsnapl_sse42-intlist.o gsnapl_sse42-uintlist.o gsnapl_sse42-uint8list.o gsnapl_sse42-list.o gsnapl_sse42-littleendian.o gsnapl_sse42-bigendian.o gsnapl_sse42-univinterval.o gsnapl_sse42-interval.o gsnapl_sse42-stopwatch.o gsnapl_sse42-semaphore.o gsnapl_sse42-access.o gsnapl_sse42-filestring.o gsnapl_sse42-iit-read-univ.o gsnapl_sse42-iit-read.o gsnapl_sse42-bzip2.o gsnapl_sse42-reader.o gsnapl_sse42-genomicpos.o gsnapl_sse42-compress.o gsnapl_sse42-genome.o gsnapl_sse42-transcriptome.o gsnapl_sse42-popcount.o gsnapl_sse42-genomebits.o gsnapl_sse42-genomebits_consec.o gsnapl_sse42-genomebits_count.o gsnapl_sse42-genomebits_kmer.o gsnapl_sse42-genomebits_indel.o gsnapl_sse42-genomebits_decode.o gsnapl_sse42-genomebits_mismatches.o gsnapl_sse42-genomebits_trim.o gsnapl_sse42-dinucl_bits.o gsnapl_sse42-genome_sites.o gsnapl_sse42-bitpack64-read.o gsnapl_sse42-bitpack64-readtwo.o gsnapl_sse42-mergeinfo.o gsnapl_sse42-merge-diagonals-heap.o gsnapl_sse42-merge-uint8.o gsnapl_sse42-merge-diagonals-simd-uint8.o gsnapl_sse42-merge-uint4.o gsnapl_sse42-merge-diagonals-simd-uint4.o gsnapl_sse42-indexdb.o gsnapl_sse42-localdb-read.o gsnapl_sse42-oligo.o gsnapl_sse42-chrnum.o gsnapl_sse42-maxent_hr.o gsnapl_sse42-mapq.o gsnapl_sse42-fopen.o gsnapl_sse42-shortread.o gsnapl_sse42-junction.o gsnapl_sse42-concordance.o gsnapl_sse42-simplepair.o gsnapl_sse42-orderstat.o gsnapl_sse42-intlistpool.o gsnapl_sse42-uintlistpool.o gsnapl_sse42-uint8listpool.o gsnapl_sse42-listpool.o gsnapl_sse42-hitlistpool.o gsnapl_sse42-pathpool.o gsnapl_sse42-auxinfopool.o gsnapl_sse42-intron.o gsnapl_sse42-gbuffer.o gsnapl_sse42-select64-common.o gsnapl_sse42-select64-ones.o gsnapl_sse42-select64-zeroes.o gsnapl_sse42-ef64.o gsnapl_sse42-nr-x.o gsnapl_sse42-knownsplicing.o gsnapl_sse42-knownindels.o gsnapl_sse42-splice.o gsnapl_sse42-indel.o gsnapl_sse42-spliceendsgen.o gsnapl_sse42-spliceends.o gsnapl_sse42-bitpack64-access.o gsnapl_sse42-trdiag.o gsnapl_sse42-trdiagpool.o gsnapl_sse42-tr-extension-search.o gsnapl_sse42-univdiag.o gsnapl_sse42-univdiagpool.o gsnapl_sse42-sedgesort.o gsnapl_sse42-auxinfo.o gsnapl_sse42-altsplice.o gsnapl_sse42-path.o gsnapl_sse42-pathpair.o gsnapl_sse42-path-solve.o gsnapl_sse42-path-fusion.o gsnapl_sse42-path-trim.o gsnapl_sse42-path-eval.o gsnapl_sse42-pathpair-eval.o gsnapl_sse42-path-print-alignment.o gsnapl_sse42-path-print-m8.o gsnapl_sse42-path-print-sam.o gsnapl_sse42-path-learn.o gsnapl_sse42-method.o gsnapl_sse42-doublelist.o gsnapl_sse42-bitvector.o gsnapl_sse42-transcriptpool.o gsnapl_sse42-exon.o gsnapl_sse42-transcript.o gsnapl_sse42-trpathpool.o gsnapl_sse42-trpath.o gsnapl_sse42-trpath-solve.o gsnapl_sse42-trpath-convert.o gsnapl_sse42-transcriptome-search.o gsnapl_sse42-vectorpool.o gsnapl_sse42-repair.o gsnapl_sse42-transcript-remap.o gsnapl_sse42-transcript-velocity.o gsnapl_sse42-intersect-large.o gsnapl_sse42-intersect-small.o gsnapl_sse42-intersect-uint2.o gsnapl_sse42-intersect-approx-uint4.o gsnapl_sse42-intersect-approx-uint8.o gsnapl_sse42-intersect-approx-indices-uint8.o gsnapl_sse42-intersect-wdups-indices.o gsnapl_sse42-intersect-lower-large.o gsnapl_sse42-intersect-higher-large.o gsnapl_sse42-intersect-indices-small.o gsnapl_sse42-intersect-indices2-large.o gsnapl_sse42-intersect-indices-uint8.o gsnapl_sse42-intersect-concordance-uint8.o gsnapl_sse42-kmer-search.o gsnapl_sse42-extension-search.o gsnapl_sse42-repetitive.o gsnapl_sse42-uint8table.o gsnapl_sse42-stage1hr.o gsnapl_sse42-stage1hr-single.o gsnapl_sse42-stage1hr-paired.o gsnapl_sse42-uint8tableuint.o gsnapl_sse42-tableuint.o gsnapl_sse42-single-cell.o gsnapl_sse42-request.o gsnapl_sse42-resulthr.o gsnapl_sse42-output.o gsnapl_sse42-inbuffer.o gsnapl_sse42-samheader.o gsnapl_sse42-printbuffer.o gsnapl_sse42-outbuffer.o gsnapl_sse42-datadir.o gsnapl_sse42-parserange.o gsnapl_sse42-getline.o gsnapl_sse42-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/src'
Making all in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/util'
cp gmap_process.pl gmap_process
cp gmap_build.pl gmap_build
cp gmap_cat.pl gmap_cat
cp md_coords.pl md_coords
chmod +x gmap_process
chmod +x gmap_build
chmod +x gmap_cat
chmod +x md_coords
cp fa_coords.pl fa_coords
cp psl_splicesites.pl psl_splicesites
cp psl_introns.pl psl_introns
cp psl_genes.pl psl_genes
chmod +x fa_coords
chmod +x psl_splicesites
chmod +x psl_introns
chmod +x psl_genes
cp ensembl_genes.pl ensembl_genes
cp gtf_splicesites.pl gtf_splicesites
cp gtf_introns.pl gtf_introns
chmod +x ensembl_genes
chmod +x gtf_introns
chmod +x gtf_splicesites
cp gtf_genes.pl gtf_genes
cp gtf_transcript_splicesites.pl gtf_transcript_splicesites
cp gff3_splicesites.pl gff3_splicesites
cp gff3_introns.pl gff3_introns
chmod +x gtf_genes
chmod +x gtf_transcript_splicesites
chmod +x gff3_splicesites
chmod +x gff3_introns
cp gff3_genes.pl gff3_genes
cp dbsnp_iit.pl dbsnp_iit
cp gvf_iit.pl gvf_iit
chmod +x gff3_genes
cp vcf_iit.pl vcf_iit
chmod +x dbsnp_iit
chmod +x gvf_iit
chmod +x vcf_iit
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/util'
Making all in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/tests'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42'
dh_auto_build --builddir build_avx2
	cd build_avx2 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_avx2'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/src'
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/src'
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo '../../src/'`gmap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo '../../src/'`gmapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo '../../src/'`get-genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo '../../src/'`saca-k.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-localdb-write.o `test -f 'localdb-write.c' || echo '../../src/'`localdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo '../../src/'`tableuint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo '../../src/'`bytecoding.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo '../../src/'`sarray-write.c
In file included from ../../src/sarray-write.c:34:
../../src/sarray-write.c: In function ‘Sarray_write_csa’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:808:3: note: in expansion of macro ‘FREAD_UINT’
  808 |   FREAD_UINT(&sa_i,sa_fp);
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:815:5: note: in expansion of macro ‘FREAD_UINTS’
  815 |     FREAD_UINTS(read_buffer,RW_BATCH,sa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:828:5: note: in expansion of macro ‘FREAD_UINT’
  828 |     FREAD_UINT(&sa_i,sa_fp);
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1022:5: note: in expansion of macro ‘FREAD_UINTS’
 1022 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1033:5: note: in expansion of macro ‘FREAD_UINT’
 1033 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1064:5: note: in expansion of macro ‘FREAD_UINTS’
 1064 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1080:5: note: in expansion of macro ‘FREAD_UINT’
 1080 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1111:5: note: in expansion of macro ‘FREAD_UINTS’
 1111 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1112:5: note: in expansion of macro ‘FREAD_UINTS’
 1112 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1140:5: note: in expansion of macro ‘FREAD_UINT’
 1140 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1141:5: note: in expansion of macro ‘FREAD_UINT’
 1141 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp_bytes’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1246:5: note: in expansion of macro ‘FREAD_UINTS’
 1246 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1257:5: note: in expansion of macro ‘FREAD_UINT’
 1257 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1288:5: note: in expansion of macro ‘FREAD_UINTS’
 1288 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1304:5: note: in expansion of macro ‘FREAD_UINT’
 1304 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1335:5: note: in expansion of macro ‘FREAD_UINTS’
 1335 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1336:5: note: in expansion of macro ‘FREAD_UINTS’
 1336 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1370:5: note: in expansion of macro ‘FREAD_UINT’
 1370 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1371:5: note: in expansion of macro ‘FREAD_UINT’
 1371 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_discriminating_chars’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2318:3: note: in expansion of macro ‘FREAD_UINT’
 2318 |   FREAD_UINT(&SA_i_minus_1,fp); /* Initializes SA[0] */
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2321:5: note: in expansion of macro ‘FREAD_UINTS’
 2321 |     FREAD_UINTS(read_buffer,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2443:5: note: in expansion of macro ‘FREAD_UINT’
 2443 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo '../../src/'`gmapindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo '../../src/'`indexdb-cat.c
../../src/indexdb-cat.c: In function ‘main’:
../../src/indexdb-cat.c:823:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  823 |     fprintf(stderr,"Total number of offsets: %llu => pages file not required\n",total_noffsets);
      |                                              ~~~^                               ~~~~~~~~~~~~~~
      |                                                 |                               |
      |                                                 long long unsigned int          Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:827:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  827 |     fprintf(stderr,"Total number of offsets: %llu => pages file required\n",total_noffsets);
      |                                              ~~~^                           ~~~~~~~~~~~~~~
      |                                                 |                           |
      |                                                 long long unsigned int      Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:901:14: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |           ~~~^         ~~~~~~~~~~~~~~
      |              |         |
      |              |         Univcoord_T {aka long unsigned int}
      |              long long unsigned int
      |           %lu
../../src/indexdb-cat.c:901:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |                ~~~^                   ~~~~~~~~~~~~~~~~~~
      |                   |                   |
      |                   |                   Univcoord_T {aka long unsigned int}
      |                   long long unsigned int
      |                %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo '../../src/'`iit-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo '../../src/'`iit_store.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-except.o `test -f 'except.c' || echo '../../src/'`except.c
../../src/iit_store.c: In function ‘parse_fasta’:
../../src/iit_store.c:689:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  689 |       fprintf(stderr,"Assigning %llu to end\n",end);
      |                                 ~~~^           ~~~
      |                                    |           |
      |                                    |           Univcoord_T {aka long unsigned int}
      |                                    long long unsigned int
      |                                 %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo '../../src/'`iit_get.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo '../../src/'`iit_dump.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo '../../src/'`gsnap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo '../../src/'`gsnapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo '../../src/'`snpindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo '../../src/'`cmetindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo '../../src/'`atoiindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-trindex.o `test -f 'trindex.c' || echo '../../src/'`trindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx2-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx2-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx2-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx2-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cpuid cpuid-cpuid.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap gmap-cpuid.o gmap-gmap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-get-genome.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-saca-k.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-popcount.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-indexdb-cat.o  -lz -lbz2 -lm 
gcc    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-iit_store.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-iit_get.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-iit_dump.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o  -lm 
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1257:46,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1264:22,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-snpindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-cmetindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-atoiindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-popcount.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-bitpack64-readtwo.o trindex-transcriptome.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-trindex.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-dinucl_bits.o gmap_nosimd-genome_canonical.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-printbuffer.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-dinucl_bits.o gmapl_nosimd-genome_canonical.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-uint8table_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-printbuffer.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genomebits.o gsnap_nosimd-genomebits_consec.o gsnap_nosimd-genomebits_count.o gsnap_nosimd-genomebits_kmer.o gsnap_nosimd-genomebits_indel.o gsnap_nosimd-genomebits_decode.o gsnap_nosimd-genomebits_mismatches.o gsnap_nosimd-genomebits_trim.o gsnap_nosimd-dinucl_bits.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-mergeinfo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-localdb-read.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-junction.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-pathpool.o gsnap_nosimd-auxinfopool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-select64-common.o gsnap_nosimd-select64-ones.o gsnap_nosimd-select64-zeroes.o gsnap_nosimd-ef64.o gsnap_nosimd-nr-x.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-knownindels.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-spliceendsgen.o gsnap_nosimd-spliceends.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-trdiag.o gsnap_nosimd-trdiagpool.o gsnap_nosimd-tr-extension-search.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-auxinfo.o gsnap_nosimd-altsplice.o gsnap_nosimd-path.o gsnap_nosimd-pathpair.o gsnap_nosimd-path-solve.o gsnap_nosimd-path-fusion.o gsnap_nosimd-path-trim.o gsnap_nosimd-path-eval.o gsnap_nosimd-pathpair-eval.o gsnap_nosimd-path-print-alignment.o gsnap_nosimd-path-print-m8.o gsnap_nosimd-path-print-sam.o gsnap_nosimd-path-learn.o gsnap_nosimd-method.o gsnap_nosimd-doublelist.o gsnap_nosimd-bitvector.o gsnap_nosimd-transcriptpool.o gsnap_nosimd-exon.o gsnap_nosimd-transcript.o gsnap_nosimd-trpathpool.o gsnap_nosimd-trpath.o gsnap_nosimd-trpath-solve.o gsnap_nosimd-trpath-convert.o gsnap_nosimd-transcriptome-search.o gsnap_nosimd-vectorpool.o gsnap_nosimd-repair.o gsnap_nosimd-transcript-remap.o gsnap_nosimd-transcript-velocity.o gsnap_nosimd-intersect-small.o gsnap_nosimd-intersect-uint2.o gsnap_nosimd-intersect-approx-uint4.o gsnap_nosimd-intersect-approx-indices-uint4.o gsnap_nosimd-intersect-wdups-indices.o gsnap_nosimd-intersect-lower-small.o gsnap_nosimd-intersect-higher-small.o gsnap_nosimd-intersect-indices-small.o gsnap_nosimd-intersect-indices2-small.o gsnap_nosimd-intersect-concordance-uint4.o gsnap_nosimd-kmer-search.o gsnap_nosimd-extension-search.o gsnap_nosimd-repetitive.o gsnap_nosimd-uint8table.o gsnap_nosimd-uinttable.o gsnap_nosimd-stage1hr.o gsnap_nosimd-stage1hr-single.o gsnap_nosimd-stage1hr-paired.o gsnap_nosimd-uinttableuint.o gsnap_nosimd-tableuint.o gsnap_nosimd-single-cell.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-printbuffer.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genomebits.o gsnapl_nosimd-genomebits_consec.o gsnapl_nosimd-genomebits_count.o gsnapl_nosimd-genomebits_kmer.o gsnapl_nosimd-genomebits_indel.o gsnapl_nosimd-genomebits_decode.o gsnapl_nosimd-genomebits_mismatches.o gsnapl_nosimd-genomebits_trim.o gsnapl_nosimd-dinucl_bits.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-mergeinfo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-localdb-read.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-junction.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uintlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-pathpool.o gsnapl_nosimd-auxinfopool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-select64-common.o gsnapl_nosimd-select64-ones.o gsnapl_nosimd-select64-zeroes.o gsnapl_nosimd-ef64.o gsnapl_nosimd-nr-x.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-knownindels.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-spliceendsgen.o gsnapl_nosimd-spliceends.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-trdiag.o gsnapl_nosimd-trdiagpool.o gsnapl_nosimd-tr-extension-search.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-auxinfo.o gsnapl_nosimd-altsplice.o gsnapl_nosimd-path.o gsnapl_nosimd-pathpair.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-path-fusion.o gsnapl_nosimd-path-trim.o gsnapl_nosimd-path-eval.o gsnapl_nosimd-pathpair-eval.o gsnapl_nosimd-path-print-alignment.o gsnapl_nosimd-path-print-m8.o gsnapl_nosimd-path-print-sam.o gsnapl_nosimd-path-learn.o gsnapl_nosimd-method.o gsnapl_nosimd-doublelist.o gsnapl_nosimd-bitvector.o gsnapl_nosimd-transcriptpool.o gsnapl_nosimd-exon.o gsnapl_nosimd-transcript.o gsnapl_nosimd-trpathpool.o gsnapl_nosimd-trpath.o gsnapl_nosimd-trpath-solve.o gsnapl_nosimd-trpath-convert.o gsnapl_nosimd-transcriptome-search.o gsnapl_nosimd-vectorpool.o gsnapl_nosimd-repair.o gsnapl_nosimd-transcript-remap.o gsnapl_nosimd-transcript-velocity.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-intersect-small.o gsnapl_nosimd-intersect-uint2.o gsnapl_nosimd-intersect-approx-uint4.o gsnapl_nosimd-intersect-approx-uint8.o gsnapl_nosimd-intersect-approx-indices-uint8.o gsnapl_nosimd-intersect-wdups-indices.o gsnapl_nosimd-intersect-lower-large.o gsnapl_nosimd-intersect-higher-large.o gsnapl_nosimd-intersect-indices-small.o gsnapl_nosimd-intersect-indices2-large.o gsnapl_nosimd-intersect-indices-uint8.o gsnapl_nosimd-intersect-concordance-uint8.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-repetitive.o gsnapl_nosimd-uint8table.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-stage1hr-single.o gsnapl_nosimd-stage1hr-paired.o gsnapl_nosimd-uint8tableuint.o gsnapl_nosimd-tableuint.o gsnapl_nosimd-single-cell.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-printbuffer.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.avx2 gmap_avx2-except.o gmap_avx2-assert.o gmap_avx2-mem.o gmap_avx2-intlist.o gmap_avx2-uintlist.o gmap_avx2-list.o gmap_avx2-littleendian.o gmap_avx2-bigendian.o gmap_avx2-univinterval.o gmap_avx2-interval.o gmap_avx2-stopwatch.o gmap_avx2-semaphore.o gmap_avx2-access.o gmap_avx2-filestring.o gmap_avx2-iit-read-univ.o gmap_avx2-iit-read.o gmap_avx2-md5.o gmap_avx2-bzip2.o gmap_avx2-fopen.o gmap_avx2-sequence.o gmap_avx2-reader.o gmap_avx2-genomicpos.o gmap_avx2-compress.o gmap_avx2-compress-write.o gmap_avx2-gbuffer.o gmap_avx2-genome.o gmap_avx2-popcount.o gmap_avx2-dinucl_bits.o gmap_avx2-genome_canonical.o gmap_avx2-genome-write.o gmap_avx2-bitpack64-read.o gmap_avx2-bitpack64-readtwo.o gmap_avx2-indexdb.o gmap_avx2-oligo.o gmap_avx2-block.o gmap_avx2-chrom.o gmap_avx2-segmentpos.o gmap_avx2-chrnum.o gmap_avx2-uinttable_rh.o gmap_avx2-gregion.o gmap_avx2-match.o gmap_avx2-matchpool.o gmap_avx2-diagnostic.o gmap_avx2-stage1.o gmap_avx2-diag.o gmap_avx2-diagpool.o gmap_avx2-cmet.o gmap_avx2-atoi.o gmap_avx2-orderstat.o gmap_avx2-oligoindex_hr.o gmap_avx2-intron.o gmap_avx2-maxent.o gmap_avx2-maxent_hr.o gmap_avx2-pair.o gmap_avx2-pairpool.o gmap_avx2-cellpool.o gmap_avx2-stage2.o gmap_avx2-doublelist.o gmap_avx2-smooth.o gmap_avx2-splicestringpool.o gmap_avx2-splicetrie_build.o gmap_avx2-splicetrie.o gmap_avx2-boyer-moore.o gmap_avx2-dynprog.o gmap_avx2-dynprog_simd.o gmap_avx2-dynprog_single.o gmap_avx2-dynprog_genome.o gmap_avx2-dynprog_cdna.o gmap_avx2-dynprog_end.o gmap_avx2-translation.o gmap_avx2-pbinom.o gmap_avx2-changepoint.o gmap_avx2-stage3.o gmap_avx2-request.o gmap_avx2-result.o gmap_avx2-output.o gmap_avx2-inbuffer.o gmap_avx2-samheader.o gmap_avx2-printbuffer.o gmap_avx2-outbuffer.o gmap_avx2-chimera.o gmap_avx2-datadir.o gmap_avx2-parserange.o gmap_avx2-getline.o gmap_avx2-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.avx2 gmapl_avx2-except.o gmapl_avx2-assert.o gmapl_avx2-mem.o gmapl_avx2-intlist.o gmapl_avx2-uintlist.o gmapl_avx2-uint8list.o gmapl_avx2-list.o gmapl_avx2-littleendian.o gmapl_avx2-bigendian.o gmapl_avx2-univinterval.o gmapl_avx2-interval.o gmapl_avx2-stopwatch.o gmapl_avx2-semaphore.o gmapl_avx2-access.o gmapl_avx2-filestring.o gmapl_avx2-iit-read-univ.o gmapl_avx2-iit-read.o gmapl_avx2-md5.o gmapl_avx2-bzip2.o gmapl_avx2-fopen.o gmapl_avx2-sequence.o gmapl_avx2-reader.o gmapl_avx2-genomicpos.o gmapl_avx2-compress.o gmapl_avx2-compress-write.o gmapl_avx2-gbuffer.o gmapl_avx2-genome.o gmapl_avx2-popcount.o gmapl_avx2-dinucl_bits.o gmapl_avx2-genome_canonical.o gmapl_avx2-genome-write.o gmapl_avx2-bitpack64-read.o gmapl_avx2-bitpack64-readtwo.o gmapl_avx2-indexdb.o gmapl_avx2-oligo.o gmapl_avx2-block.o gmapl_avx2-chrom.o gmapl_avx2-segmentpos.o gmapl_avx2-chrnum.o gmapl_avx2-uinttable_rh.o gmapl_avx2-uint8table_rh.o gmapl_avx2-gregion.o gmapl_avx2-match.o gmapl_avx2-matchpool.o gmapl_avx2-diagnostic.o gmapl_avx2-stage1.o gmapl_avx2-diag.o gmapl_avx2-diagpool.o gmapl_avx2-cmet.o gmapl_avx2-atoi.o gmapl_avx2-orderstat.o gmapl_avx2-oligoindex_hr.o gmapl_avx2-intron.o gmapl_avx2-maxent.o gmapl_avx2-maxent_hr.o gmapl_avx2-pair.o gmapl_avx2-pairpool.o gmapl_avx2-cellpool.o gmapl_avx2-stage2.o gmapl_avx2-doublelist.o gmapl_avx2-smooth.o gmapl_avx2-splicestringpool.o gmapl_avx2-splicetrie_build.o gmapl_avx2-splicetrie.o gmapl_avx2-boyer-moore.o gmapl_avx2-dynprog.o gmapl_avx2-dynprog_simd.o gmapl_avx2-dynprog_single.o gmapl_avx2-dynprog_genome.o gmapl_avx2-dynprog_cdna.o gmapl_avx2-dynprog_end.o gmapl_avx2-translation.o gmapl_avx2-pbinom.o gmapl_avx2-changepoint.o gmapl_avx2-stage3.o gmapl_avx2-request.o gmapl_avx2-result.o gmapl_avx2-output.o gmapl_avx2-inbuffer.o gmapl_avx2-samheader.o gmapl_avx2-printbuffer.o gmapl_avx2-outbuffer.o gmapl_avx2-chimera.o gmapl_avx2-datadir.o gmapl_avx2-parserange.o gmapl_avx2-getline.o gmapl_avx2-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.avx2 gsnap_avx2-except.o gsnap_avx2-assert.o gsnap_avx2-mem.o gsnap_avx2-intlist.o gsnap_avx2-uintlist.o gsnap_avx2-list.o gsnap_avx2-littleendian.o gsnap_avx2-bigendian.o gsnap_avx2-univinterval.o gsnap_avx2-interval.o gsnap_avx2-stopwatch.o gsnap_avx2-semaphore.o gsnap_avx2-access.o gsnap_avx2-filestring.o gsnap_avx2-iit-read-univ.o gsnap_avx2-iit-read.o gsnap_avx2-bzip2.o gsnap_avx2-reader.o gsnap_avx2-genomicpos.o gsnap_avx2-compress.o gsnap_avx2-genome.o gsnap_avx2-transcriptome.o gsnap_avx2-popcount.o gsnap_avx2-genomebits.o gsnap_avx2-genomebits_consec.o gsnap_avx2-genomebits_count.o gsnap_avx2-genomebits_kmer.o gsnap_avx2-genomebits_indel.o gsnap_avx2-genomebits_decode.o gsnap_avx2-genomebits_mismatches.o gsnap_avx2-genomebits_trim.o gsnap_avx2-dinucl_bits.o gsnap_avx2-genome_sites.o gsnap_avx2-bitpack64-read.o gsnap_avx2-bitpack64-readtwo.o gsnap_avx2-mergeinfo.o gsnap_avx2-merge-uint4.o gsnap_avx2-merge-diagonals-simd-uint4.o gsnap_avx2-indexdb.o gsnap_avx2-localdb-read.o gsnap_avx2-oligo.o gsnap_avx2-chrnum.o gsnap_avx2-maxent_hr.o gsnap_avx2-mapq.o gsnap_avx2-fopen.o gsnap_avx2-shortread.o gsnap_avx2-junction.o gsnap_avx2-concordance.o gsnap_avx2-simplepair.o gsnap_avx2-orderstat.o gsnap_avx2-intlistpool.o gsnap_avx2-uintlistpool.o gsnap_avx2-listpool.o gsnap_avx2-hitlistpool.o gsnap_avx2-pathpool.o gsnap_avx2-auxinfopool.o gsnap_avx2-intron.o gsnap_avx2-gbuffer.o gsnap_avx2-select64-common.o gsnap_avx2-select64-ones.o gsnap_avx2-select64-zeroes.o gsnap_avx2-ef64.o gsnap_avx2-nr-x.o gsnap_avx2-knownsplicing.o gsnap_avx2-knownindels.o gsnap_avx2-splice.o gsnap_avx2-indel.o gsnap_avx2-spliceendsgen.o gsnap_avx2-spliceends.o gsnap_avx2-bitpack64-access.o gsnap_avx2-trdiag.o gsnap_avx2-trdiagpool.o gsnap_avx2-tr-extension-search.o gsnap_avx2-univdiag.o gsnap_avx2-univdiagpool.o gsnap_avx2-sedgesort.o gsnap_avx2-auxinfo.o gsnap_avx2-altsplice.o gsnap_avx2-path.o gsnap_avx2-pathpair.o gsnap_avx2-path-solve.o gsnap_avx2-path-fusion.o gsnap_avx2-path-trim.o gsnap_avx2-path-eval.o gsnap_avx2-pathpair-eval.o gsnap_avx2-path-print-alignment.o gsnap_avx2-path-print-m8.o gsnap_avx2-path-print-sam.o gsnap_avx2-path-learn.o gsnap_avx2-method.o gsnap_avx2-doublelist.o gsnap_avx2-bitvector.o gsnap_avx2-transcriptpool.o gsnap_avx2-exon.o gsnap_avx2-transcript.o gsnap_avx2-trpathpool.o gsnap_avx2-trpath.o gsnap_avx2-trpath-solve.o gsnap_avx2-trpath-convert.o gsnap_avx2-transcriptome-search.o gsnap_avx2-vectorpool.o gsnap_avx2-repair.o gsnap_avx2-transcript-remap.o gsnap_avx2-transcript-velocity.o gsnap_avx2-intersect-small.o gsnap_avx2-intersect-uint2.o gsnap_avx2-intersect-approx-uint4.o gsnap_avx2-intersect-approx-indices-uint4.o gsnap_avx2-intersect-wdups-indices.o gsnap_avx2-intersect-lower-small.o gsnap_avx2-intersect-higher-small.o gsnap_avx2-intersect-indices-small.o gsnap_avx2-intersect-indices2-small.o gsnap_avx2-intersect-concordance-uint4.o gsnap_avx2-kmer-search.o gsnap_avx2-extension-search.o gsnap_avx2-repetitive.o gsnap_avx2-uint8table.o gsnap_avx2-uinttable.o gsnap_avx2-stage1hr.o gsnap_avx2-stage1hr-single.o gsnap_avx2-stage1hr-paired.o gsnap_avx2-uinttableuint.o gsnap_avx2-tableuint.o gsnap_avx2-single-cell.o gsnap_avx2-request.o gsnap_avx2-resulthr.o gsnap_avx2-output.o gsnap_avx2-inbuffer.o gsnap_avx2-samheader.o gsnap_avx2-printbuffer.o gsnap_avx2-outbuffer.o gsnap_avx2-datadir.o gsnap_avx2-parserange.o gsnap_avx2-getline.o gsnap_avx2-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mbmi2 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.avx2 gsnapl_avx2-except.o gsnapl_avx2-assert.o gsnapl_avx2-mem.o gsnapl_avx2-intlist.o gsnapl_avx2-uintlist.o gsnapl_avx2-uint8list.o gsnapl_avx2-list.o gsnapl_avx2-littleendian.o gsnapl_avx2-bigendian.o gsnapl_avx2-univinterval.o gsnapl_avx2-interval.o gsnapl_avx2-stopwatch.o gsnapl_avx2-semaphore.o gsnapl_avx2-access.o gsnapl_avx2-filestring.o gsnapl_avx2-iit-read-univ.o gsnapl_avx2-iit-read.o gsnapl_avx2-bzip2.o gsnapl_avx2-reader.o gsnapl_avx2-genomicpos.o gsnapl_avx2-compress.o gsnapl_avx2-genome.o gsnapl_avx2-transcriptome.o gsnapl_avx2-popcount.o gsnapl_avx2-genomebits.o gsnapl_avx2-genomebits_consec.o gsnapl_avx2-genomebits_count.o gsnapl_avx2-genomebits_kmer.o gsnapl_avx2-genomebits_indel.o gsnapl_avx2-genomebits_decode.o gsnapl_avx2-genomebits_mismatches.o gsnapl_avx2-genomebits_trim.o gsnapl_avx2-dinucl_bits.o gsnapl_avx2-genome_sites.o gsnapl_avx2-bitpack64-read.o gsnapl_avx2-bitpack64-readtwo.o gsnapl_avx2-mergeinfo.o gsnapl_avx2-merge-diagonals-heap.o gsnapl_avx2-merge-uint8.o gsnapl_avx2-merge-diagonals-simd-uint8.o gsnapl_avx2-merge-uint4.o gsnapl_avx2-merge-diagonals-simd-uint4.o gsnapl_avx2-indexdb.o gsnapl_avx2-localdb-read.o gsnapl_avx2-oligo.o gsnapl_avx2-chrnum.o gsnapl_avx2-maxent_hr.o gsnapl_avx2-mapq.o gsnapl_avx2-fopen.o gsnapl_avx2-shortread.o gsnapl_avx2-junction.o gsnapl_avx2-concordance.o gsnapl_avx2-simplepair.o gsnapl_avx2-orderstat.o gsnapl_avx2-intlistpool.o gsnapl_avx2-uintlistpool.o gsnapl_avx2-uint8listpool.o gsnapl_avx2-listpool.o gsnapl_avx2-hitlistpool.o gsnapl_avx2-pathpool.o gsnapl_avx2-auxinfopool.o gsnapl_avx2-intron.o gsnapl_avx2-gbuffer.o gsnapl_avx2-select64-common.o gsnapl_avx2-select64-ones.o gsnapl_avx2-select64-zeroes.o gsnapl_avx2-ef64.o gsnapl_avx2-nr-x.o gsnapl_avx2-knownsplicing.o gsnapl_avx2-knownindels.o gsnapl_avx2-splice.o gsnapl_avx2-indel.o gsnapl_avx2-spliceendsgen.o gsnapl_avx2-spliceends.o gsnapl_avx2-bitpack64-access.o gsnapl_avx2-trdiag.o gsnapl_avx2-trdiagpool.o gsnapl_avx2-tr-extension-search.o gsnapl_avx2-univdiag.o gsnapl_avx2-univdiagpool.o gsnapl_avx2-sedgesort.o gsnapl_avx2-auxinfo.o gsnapl_avx2-altsplice.o gsnapl_avx2-path.o gsnapl_avx2-pathpair.o gsnapl_avx2-path-solve.o gsnapl_avx2-path-fusion.o gsnapl_avx2-path-trim.o gsnapl_avx2-path-eval.o gsnapl_avx2-pathpair-eval.o gsnapl_avx2-path-print-alignment.o gsnapl_avx2-path-print-m8.o gsnapl_avx2-path-print-sam.o gsnapl_avx2-path-learn.o gsnapl_avx2-method.o gsnapl_avx2-doublelist.o gsnapl_avx2-bitvector.o gsnapl_avx2-transcriptpool.o gsnapl_avx2-exon.o gsnapl_avx2-transcript.o gsnapl_avx2-trpathpool.o gsnapl_avx2-trpath.o gsnapl_avx2-trpath-solve.o gsnapl_avx2-trpath-convert.o gsnapl_avx2-transcriptome-search.o gsnapl_avx2-vectorpool.o gsnapl_avx2-repair.o gsnapl_avx2-transcript-remap.o gsnapl_avx2-transcript-velocity.o gsnapl_avx2-intersect-large.o gsnapl_avx2-intersect-small.o gsnapl_avx2-intersect-uint2.o gsnapl_avx2-intersect-approx-uint4.o gsnapl_avx2-intersect-approx-uint8.o gsnapl_avx2-intersect-approx-indices-uint8.o gsnapl_avx2-intersect-wdups-indices.o gsnapl_avx2-intersect-lower-large.o gsnapl_avx2-intersect-higher-large.o gsnapl_avx2-intersect-indices-small.o gsnapl_avx2-intersect-indices2-large.o gsnapl_avx2-intersect-indices-uint8.o gsnapl_avx2-intersect-concordance-uint8.o gsnapl_avx2-kmer-search.o gsnapl_avx2-extension-search.o gsnapl_avx2-repetitive.o gsnapl_avx2-uint8table.o gsnapl_avx2-stage1hr.o gsnapl_avx2-stage1hr-single.o gsnapl_avx2-stage1hr-paired.o gsnapl_avx2-uint8tableuint.o gsnapl_avx2-tableuint.o gsnapl_avx2-single-cell.o gsnapl_avx2-request.o gsnapl_avx2-resulthr.o gsnapl_avx2-output.o gsnapl_avx2-inbuffer.o gsnapl_avx2-samheader.o gsnapl_avx2-printbuffer.o gsnapl_avx2-outbuffer.o gsnapl_avx2-datadir.o gsnapl_avx2-parserange.o gsnapl_avx2-getline.o gsnapl_avx2-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/src'
Making all in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/util'
cp gmap_process.pl gmap_process
cp gmap_build.pl gmap_build
cp gmap_cat.pl gmap_cat
cp md_coords.pl md_coords
chmod +x gmap_process
chmod +x gmap_build
chmod +x gmap_cat
chmod +x md_coords
cp fa_coords.pl fa_coords
cp psl_splicesites.pl psl_splicesites
cp psl_introns.pl psl_introns
chmod +x fa_coords
chmod +x psl_splicesites
chmod +x psl_introns
cp psl_genes.pl psl_genes
cp ensembl_genes.pl ensembl_genes
cp gtf_splicesites.pl gtf_splicesites
cp gtf_introns.pl gtf_introns
chmod +x psl_genes
chmod +x ensembl_genes
chmod +x gtf_splicesites
cp gtf_genes.pl gtf_genes
chmod +x gtf_introns
cp gtf_transcript_splicesites.pl gtf_transcript_splicesites
cp gff3_splicesites.pl gff3_splicesites
chmod +x gtf_genes
chmod +x gtf_transcript_splicesites
cp gff3_introns.pl gff3_introns
chmod +x gff3_splicesites
cp gff3_genes.pl gff3_genes
chmod +x gff3_introns
cp dbsnp_iit.pl dbsnp_iit
cp gvf_iit.pl gvf_iit
chmod +x gff3_genes
chmod +x dbsnp_iit
chmod +x gvf_iit
cp vcf_iit.pl vcf_iit
chmod +x vcf_iit
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/util'
Making all in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/tests'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2'
dh_auto_build --builddir build_avx512
	cd build_avx512 && make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_avx512'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/src'
make  all-am
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/src'
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo '../../src/'`gmap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo '../../src/'`gmapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo '../../src/'`get-genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-saca-k.o `test -f 'saca-k.c' || echo '../../src/'`saca-k.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-localdb-write.o `test -f 'localdb-write.c' || echo '../../src/'`localdb-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo '../../src/'`tableuint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-bytecoding.o `test -f 'bytecoding.c' || echo '../../src/'`bytecoding.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-sarray-write.o `test -f 'sarray-write.c' || echo '../../src/'`sarray-write.c
In file included from ../../src/sarray-write.c:34:
../../src/sarray-write.c: In function ‘Sarray_write_csa’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:808:3: note: in expansion of macro ‘FREAD_UINT’
  808 |   FREAD_UINT(&sa_i,sa_fp);
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:815:5: note: in expansion of macro ‘FREAD_UINTS’
  815 |     FREAD_UINTS(read_buffer,RW_BATCH,sa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:828:5: note: in expansion of macro ‘FREAD_UINT’
  828 |     FREAD_UINT(&sa_i,sa_fp);
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1022:5: note: in expansion of macro ‘FREAD_UINTS’
 1022 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1033:5: note: in expansion of macro ‘FREAD_UINT’
 1033 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1064:5: note: in expansion of macro ‘FREAD_UINTS’
 1064 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1080:5: note: in expansion of macro ‘FREAD_UINT’
 1080 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1111:5: note: in expansion of macro ‘FREAD_UINTS’
 1111 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1112:5: note: in expansion of macro ‘FREAD_UINTS’
 1112 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1140:5: note: in expansion of macro ‘FREAD_UINT’
 1140 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1141:5: note: in expansion of macro ‘FREAD_UINT’
 1141 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
../../src/sarray-write.c: In function ‘Sarray_compute_lcp_bytes’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1246:5: note: in expansion of macro ‘FREAD_UINTS’
 1246 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1257:5: note: in expansion of macro ‘FREAD_UINT’
 1257 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1288:5: note: in expansion of macro ‘FREAD_UINTS’
 1288 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1304:5: note: in expansion of macro ‘FREAD_UINT’
 1304 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1335:5: note: in expansion of macro ‘FREAD_UINTS’
 1335 |     FREAD_UINTS(read_buffer_1,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1336:5: note: in expansion of macro ‘FREAD_UINTS’
 1336 |     FREAD_UINTS(read_buffer_2,RW_BATCH,permsa_fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1370:5: note: in expansion of macro ‘FREAD_UINT’
 1370 |     FREAD_UINT(&rank_i,fp);
      |     ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:1371:5: note: in expansion of macro ‘FREAD_UINT’
 1371 |     FREAD_UINT(&j,permsa_fp);  /* j = SA[rank_i - 1] */
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
../../src/sarray-write.c: In function ‘Sarray_discriminating_chars’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2318:3: note: in expansion of macro ‘FREAD_UINT’
 2318 |   FREAD_UINT(&SA_i_minus_1,fp); /* Initializes SA[0] */
      |   ^~~~~~~~~~
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2321:5: note: in expansion of macro ‘FREAD_UINTS’
 2321 |     FREAD_UINTS(read_buffer,RW_BATCH,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/sarray-write.c:2443:5: note: in expansion of macro ‘FREAD_UINT’
 2443 |     FREAD_UINT(&SA_i,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo '../../src/'`gmapindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo '../../src/'`indexdb-cat.c
../../src/indexdb-cat.c: In function ‘main’:
../../src/indexdb-cat.c:823:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  823 |     fprintf(stderr,"Total number of offsets: %llu => pages file not required\n",total_noffsets);
      |                                              ~~~^                               ~~~~~~~~~~~~~~
      |                                                 |                               |
      |                                                 long long unsigned int          Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:827:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  827 |     fprintf(stderr,"Total number of offsets: %llu => pages file required\n",total_noffsets);
      |                                              ~~~^                           ~~~~~~~~~~~~~~
      |                                                 |                           |
      |                                                 long long unsigned int      Univcoord_T {aka long unsigned int}
      |                                              %lu
../../src/indexdb-cat.c:901:14: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |           ~~~^         ~~~~~~~~~~~~~~
      |              |         |
      |              |         Univcoord_T {aka long unsigned int}
      |              long long unsigned int
      |           %lu
../../src/indexdb-cat.c:901:19: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  901 |   printf("%llu %llu\n",total_noffsets,total_genomelength);
      |                ~~~^                   ~~~~~~~~~~~~~~~~~~
      |                   |                   |
      |                   |                   Univcoord_T {aka long unsigned int}
      |                   long long unsigned int
      |                %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo '../../src/'`iit-write-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo '../../src/'`iit-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-tableint.o `test -f 'tableint.c' || echo '../../src/'`tableint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-table.o `test -f 'table.c' || echo '../../src/'`table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo '../../src/'`iit_store.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-except.o `test -f 'except.c' || echo '../../src/'`except.c
../../src/iit_store.c: In function ‘parse_fasta’:
../../src/iit_store.c:689:36: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  689 |       fprintf(stderr,"Assigning %llu to end\n",end);
      |                                 ~~~^           ~~~
      |                                    |           |
      |                                    |           Univcoord_T {aka long unsigned int}
      |                                    long long unsigned int
      |                                 %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo '../../src/'`iit_get.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo '../../src/'`iit_dump.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo '../../src/'`gsnap_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo '../../src/'`cpuid.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo '../../src/'`gsnapl_select.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo '../../src/'`snpindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo '../../src/'`cmetindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo '../../src/'`bitpack64-incr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo '../../src/'`indexdb-write.c
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets’:
../../src/indexdb-write.c:787:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  787 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_offsets_huge’:
../../src/indexdb-write.c:1179:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
 1179 |   fprintf(stderr,"Writing %llu offsets compressed via bitpack64...",oligospace+1UL);
      |                           ~~~^                                      ~~~~~~~~~~~~~~
      |                              |                                                |
      |                              long long unsigned int                           long unsigned int
      |                           %lu
../../src/indexdb-write.c: In function ‘Indexdb_write_positions_huge_offsets’:
../../src/indexdb-write.c:2867:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Hugepositionsptr_T’ {aka ‘long unsigned int’} [-Wformat=]
 2867 |     fprintf(stderr,"Trying to allocate %llu*(%d+%d) bytes of memory for positions...",
      |                                        ~~~^
      |                                           |
      |                                           long long unsigned int
      |                                        %lu
 2868 |             totalcounts,(int) sizeof(unsigned char),(int) sizeof(UINT8));
      |             ~~~~~~~~~~~                    
      |             |
      |             Hugepositionsptr_T {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo '../../src/'`atoiindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo '../../src/'`bitpack64-write.c
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge’:
../../src/bitpack64-write.c:5396:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5396:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5396:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5396:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5396 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5397 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5424:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5424:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                             ~~~~~~~~~~~~~~~~~~~~     
      |                                                      |
      |                                                      UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5424:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5424 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5425 |               positioni,positioni/BLOCKSIZE,ascending[positioni],nextpage);
      |                                                                  ~~~~~~~~             
      |                                                                  |
      |                                                                  UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5458:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5458:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                           ~~~~~~~~~~~~                                
      |                                    |
      |                                    UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5458:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5458 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5459 |             n,n/BLOCKSIZE,ascending[n],nextpage);
      |                                        ~~~~~~~~                                        
      |                                        |
      |                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c: In function ‘Bitpack64_write_differential_huge_bitpacks’:
../../src/bitpack64-write.c:5574:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5574:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5574:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                  ~~~^
      |                                                                     |
      |                                                                     long long unsigned int
      |                                                                  %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~               
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5574:86: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5574 |       fprintf(stderr,"\nAt position %llu (block %llu), ascending %llu >= nextpage %llu",
      |                                                                                   ~~~^
      |                                                                                      |
      |                                                                                      long long unsigned int
      |                                                                                   %lu
 5575 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                       
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:40: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                     ~~~^
      |                                        |
      |                                        long long unsigned int
      |                                     %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |               ~~~~~~~~~                 
      |               |
      |               Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5603:52: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                 ~~~^
      |                                                    |
      |                                                    long long unsigned int
      |                                                 %lu
../../src/bitpack64-write.c:5603:70: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                   ~~~^
      |                                                                      |
      |                                                                      long long unsigned int
      |                                                                   %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                             ~~~~~~~~~~                
      |                                             |
      |                                             UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5603:87: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5603 |       fprintf(stderr,"\nAt position %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                    ~~~^
      |                                                                                       |
      |                                                                                       long long unsigned int
      |                                                                                    %lu
 5604 |               positioni,positioni/BLOCKSIZE,totalcount,nextpage);
      |                                                        ~~~~~~~~                        
      |                                                        |
      |                                                        UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                      ~~~^
      |                                         |
      |                                         long long unsigned int
      |                                      %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |             ~                            
      |             |
      |             Oligospace_T {aka long unsigned int}
../../src/bitpack64-write.c:5645:53: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Oligospace_T’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                  ~~~^
      |                                                     |
      |                                                     long long unsigned int
      |                                                  %lu
../../src/bitpack64-write.c:5645:71: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                    ~~~^
      |                                                                       |
      |                                                                       long long unsigned int
      |                                                                    %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                           ~~~~~~~~~~                                   
      |                           |
      |                           UINT8 {aka long unsigned int}
../../src/bitpack64-write.c:5645:88: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘UINT8’ {aka ‘long unsigned int’} [-Wformat=]
 5645 |     fprintf(stderr,"\nAt final oligo %llu (block %llu), totalcount %llu >= nextpage %llu",
      |                                                                                     ~~~^
      |                                                                                        |
      |                                                                                        long long unsigned int
      |                                                                                     %lu
 5646 |             n,n/BLOCKSIZE,totalcount,nextpage);
      |                                      ~~~~~~~~                                           
      |                                      |
      |                                      UINT8 {aka long unsigned int}
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o trindex-trindex.o `test -f 'trindex.c' || echo '../../src/'`trindex.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path.o `test -f 'path.c' || echo '../../src/'`path.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmap_avx512-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-md5.o `test -f 'md5.c' || echo '../../src/'`md5.c
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-sequence.o `test -f 'sequence.c' || echo '../../src/'`sequence.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-compress-write.o `test -f 'compress-write.c' || echo '../../src/'`compress-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
../../src/compress-write.c: In function ‘put_compressed_one’:
../../src/compress-write.c:321:69: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  321 |         fprintf(stderr,"Don't recognize character %c at position %llu.  Using N instead\n",Buffer[i],position+i);
      |                                                                  ~~~^                                ~~~~~~~~~~
      |                                                                     |                                        |
      |                                                                     long long unsigned int                   Univcoord_T {aka long unsigned int}
      |                                                                  %lu
../../src/compress-write.c: In function ‘Compress_compress’:
../../src/compress-write.c:588:73: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 4 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
  588 |               fprintf(stderr,"Non-standard nucleotide %c at position %llu.  Using N instead\n",c,position);
      |                                                                      ~~~^                        ~~~~~~~~
      |                                                                         |                        |
      |                                                                         long long unsigned int   Univcoord_T {aka long unsigned int}
      |                                                                      %lu
In file included from ../../src/compress-write.c:21:
../../src/compress-write.c: In function ‘Compress_cat’:
../../src/littleendian.h:26:29: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   26 | #define FREAD_UINTS(a,n,fp) fread(a,sizeof(UINT4),n,fp)
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/compress-write.c:847:5: note: in expansion of macro ‘FREAD_UINTS’
  847 |     FREAD_UINTS(Buffer,3,fp);
      |     ^~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-genome_canonical.o `test -f 'genome_canonical.c' || echo '../../src/'`genome_canonical.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-genome-write.o `test -f 'genome-write.c' || echo '../../src/'`genome-write.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-block.o `test -f 'block.c' || echo '../../src/'`block.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-chrom.o `test -f 'chrom.c' || echo '../../src/'`chrom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-segmentpos.o `test -f 'segmentpos.c' || echo '../../src/'`segmentpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-uinttable_rh.o `test -f 'uinttable_rh.c' || echo '../../src/'`uinttable_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-uint8table_rh.o `test -f 'uint8table_rh.c' || echo '../../src/'`uint8table_rh.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-gregion.o `test -f 'gregion.c' || echo '../../src/'`gregion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-match.o `test -f 'match.c' || echo '../../src/'`match.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-matchpool.o `test -f 'matchpool.c' || echo '../../src/'`matchpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-diagnostic.o `test -f 'diagnostic.c' || echo '../../src/'`diagnostic.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-stage1.o `test -f 'stage1.c' || echo '../../src/'`stage1.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-diag.o `test -f 'diag.c' || echo '../../src/'`diag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-diagpool.o `test -f 'diagpool.c' || echo '../../src/'`diagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-cmet.o `test -f 'cmet.c' || echo '../../src/'`cmet.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-atoi.o `test -f 'atoi.c' || echo '../../src/'`atoi.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo '../../src/'`oligoindex_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-maxent.o `test -f 'maxent.c' || echo '../../src/'`maxent.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-pair.o `test -f 'pair.c' || echo '../../src/'`pair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-pairpool.o `test -f 'pairpool.c' || echo '../../src/'`pairpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-cellpool.o `test -f 'cellpool.c' || echo '../../src/'`cellpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-stage2.o `test -f 'stage2.c' || echo '../../src/'`stage2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-smooth.o `test -f 'smooth.c' || echo '../../src/'`smooth.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-splicestringpool.o `test -f 'splicestringpool.c' || echo '../../src/'`splicestringpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-splicetrie_build.o `test -f 'splicetrie_build.c' || echo '../../src/'`splicetrie_build.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-splicetrie.o `test -f 'splicetrie.c' || echo '../../src/'`splicetrie.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-boyer-moore.o `test -f 'boyer-moore.c' || echo '../../src/'`boyer-moore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-dynprog.o `test -f 'dynprog.c' || echo '../../src/'`dynprog.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-dynprog_simd.o `test -f 'dynprog_simd.c' || echo '../../src/'`dynprog_simd.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-dynprog_single.o `test -f 'dynprog_single.c' || echo '../../src/'`dynprog_single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-dynprog_genome.o `test -f 'dynprog_genome.c' || echo '../../src/'`dynprog_genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo '../../src/'`dynprog_cdna.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-dynprog_end.o `test -f 'dynprog_end.c' || echo '../../src/'`dynprog_end.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-translation.o `test -f 'translation.c' || echo '../../src/'`translation.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-pbinom.o `test -f 'pbinom.c' || echo '../../src/'`pbinom.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-changepoint.o `test -f 'changepoint.c' || echo '../../src/'`changepoint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-stage3.o `test -f 'stage3.c' || echo '../../src/'`stage3.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-result.o `test -f 'result.c' || echo '../../src/'`result.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-chimera.o `test -f 'chimera.c' || echo '../../src/'`chimera.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gmapl_avx512-gmap.o `test -f 'gmap.c' || echo '../../src/'`gmap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
../../src/indexdb.c: In function ‘positions_read_multiple’:
../../src/indexdb.c:1953:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1953 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-approx-indices-uint4.o `test -f 'intersect-approx-indices-uint4.c' || echo '../../src/'`intersect-approx-indices-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-lower-small.o `test -f 'intersect-lower-small.c' || echo '../../src/'`intersect-lower-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-higher-small.o `test -f 'intersect-higher-small.c' || echo '../../src/'`intersect-higher-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-indices2-small.o `test -f 'intersect-indices2-small.c' || echo '../../src/'`intersect-indices2-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-intersect-concordance-uint4.o `test -f 'intersect-concordance-uint4.c' || echo '../../src/'`intersect-concordance-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-uinttable.o `test -f 'uinttable.c' || echo '../../src/'`uinttable.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-uinttableuint.o `test -f 'uinttableuint.c' || echo '../../src/'`uinttableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnap_avx512-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-except.o `test -f 'except.c' || echo '../../src/'`except.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-assert.o `test -f 'assert.c' || echo '../../src/'`assert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-mem.o `test -f 'mem.c' || echo '../../src/'`mem.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intlist.o `test -f 'intlist.c' || echo '../../src/'`intlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-uintlist.o `test -f 'uintlist.c' || echo '../../src/'`uintlist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-uint8list.o `test -f 'uint8list.c' || echo '../../src/'`uint8list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-list.o `test -f 'list.c' || echo '../../src/'`list.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-littleendian.o `test -f 'littleendian.c' || echo '../../src/'`littleendian.c
../../src/littleendian.c: In function ‘Littleendian_write_char’:
../../src/littleendian.c:14:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint’:
../../src/littleendian.c:27:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   27 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8’:
../../src/littleendian.c:45:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   45 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c: In function ‘Littleendian_write_uint8_as_uint’:
../../src/littleendian.c:60:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/littleendian.c:66:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   66 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-bigendian.o `test -f 'bigendian.c' || echo '../../src/'`bigendian.c
../../src/bigendian.c: In function ‘Bigendian_write_char’:
../../src/bigendian.c:16:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   16 |   write(fd,buf,1);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint’:
../../src/bigendian.c:215:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |   write(fd,buf,4);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint’:
../../src/bigendian.c:299:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  299 |   read(fd,buf,4);
      |   ^~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_write_uint8’:
../../src/bigendian.c:367:3: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  367 |   write(fd,buf,8);
      |   ^~~~~~~~~~~~~~~
../../src/bigendian.c: In function ‘Bigendian_fileio_read_uint8’:
../../src/bigendian.c:484:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  484 |   read(fd,buf,8);
      |   ^~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-univinterval.o `test -f 'univinterval.c' || echo '../../src/'`univinterval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-interval.o `test -f 'interval.c' || echo '../../src/'`interval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-stopwatch.o `test -f 'stopwatch.c' || echo '../../src/'`stopwatch.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-semaphore.o `test -f 'semaphore.c' || echo '../../src/'`semaphore.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-access.o `test -f 'access.c' || echo '../../src/'`access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-filestring.o `test -f 'filestring.c' || echo '../../src/'`filestring.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-iit-read-univ.o `test -f 'iit-read-univ.c' || echo '../../src/'`iit-read-univ.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-iit-read.o `test -f 'iit-read.c' || echo '../../src/'`iit-read.c
../../src/access.c: In function ‘copy_memory_from_file’:
../../src/access.c:532:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  532 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:537:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  537 |       fread(p,sizeof(unsigned char),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:543:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  543 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:548:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  548 |       fread(p,sizeof(UINT2),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:554:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  554 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:559:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  559 |       fread(p,sizeof(UINT4),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:565:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  565 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:570:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  570 |       fread(p,sizeof(UINT8),filesize/eltsize - i,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c: In function ‘copy_limited_from_file’:
../../src/access.c:596:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  596 |       fread(p,sizeof(unsigned char),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:598:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  598 |       fread(p,sizeof(unsigned char),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:604:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  604 |       fread(p,sizeof(UINT2),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:606:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  606 |       fread(p,sizeof(UINT2),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:612:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  612 |       fread(p,sizeof(UINT4),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:614:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  614 |       fread(p,sizeof(UINT4),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:620:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  620 |       fread(p,sizeof(UINT8),FREAD_BATCH,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/access.c:622:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  622 |       fread(p,sizeof(UINT8),filesize/eltsize,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../../src/iit-read-univ.c:12:
../../src/iit-read-univ.c: In function ‘read_tree_univ’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1068:9: note: in expansion of macro ‘FREAD_UINT’
 1068 |         FREAD_UINT(&uint4,fp);
      |         ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1070:9: note: in expansion of macro ‘FREAD_INT’
 1070 |         FREAD_INT(&(new->nodes[i].a),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1071:9: note: in expansion of macro ‘FREAD_INT’
 1071 |         FREAD_INT(&(new->nodes[i].b),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1072:9: note: in expansion of macro ‘FREAD_INT’
 1072 |         FREAD_INT(&(new->nodes[i].leftindex),fp);
      |         ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1073:9: note: in expansion of macro ‘FREAD_INT’
 1073 |         FREAD_INT(&(new->nodes[i].rightindex),fp);
      |         ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_intervals_univ’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1121:7: note: in expansion of macro ‘FREAD_UINT8’
 1121 |       FREAD_UINT8(&(new->intervals[i].low),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1122:7: note: in expansion of macro ‘FREAD_UINT8’
 1122 |       FREAD_UINT8(&(new->intervals[i].high),fp);
      |       ^~~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1123:7: note: in expansion of macro ‘FREAD_INT’
 1123 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1132:7: note: in expansion of macro ‘FREAD_UINT’
 1132 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1134:7: note: in expansion of macro ‘FREAD_UINT’
 1134 |       FREAD_UINT(&uint4,fp);
      |       ^~~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1136:7: note: in expansion of macro ‘FREAD_INT’
 1136 |       FREAD_INT(&(new->intervals[i].type),fp);
      |       ^~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1196:3: note: in expansion of macro ‘FREAD_UINT’
 1196 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_annotations’:
../../src/iit-read-univ.c:1389:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1389 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1393:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1393 |   read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1397:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1397 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1401:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1401 |   read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1405:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1405 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c: In function ‘read_words_debug’:
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read-univ.c:1278:3: note: in expansion of macro ‘FREAD_UINT’
 1278 |   FREAD_UINT(&length,fp);
      |   ^~~~~~~~~~
In file included from ../../src/iit-read.c:12:
../../src/iit-read.c: In function ‘IIT_read_divint’:
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-bzip2.o `test -f 'bzip2.c' || echo '../../src/'`bzip2.c
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2588:5: note: in expansion of macro ‘FREAD_INT’
 2588 |     FREAD_INT(&version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘IIT_read’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3103:5: note: in expansion of macro ‘FREAD_INT’
 3103 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_tree’:
../../src/iit-read.c:1760:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1760 |         fread(&(new->nodes[divno][i].value),sizeof(unsigned int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1761:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1761 |         fread(&(new->nodes[divno][i].a),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1762:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1762 |         fread(&(new->nodes[divno][i].b),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1763:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1763 |         fread(&(new->nodes[divno][i].leftindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1764:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1764 |         fread(&(new->nodes[divno][i].rightindex),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_intervals’:
../../src/iit-read.c:1889:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1889 |       fread(&(new->intervals[divno][i].low),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1890:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1890 |       fread(&(new->intervals[divno][i].high),sizeof(unsigned int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1892:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1892 |         fread(&(new->intervals[divno][i].sign),sizeof(int),1,fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:1896:7: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1896 |       fread(&(new->intervals[divno][i].type),sizeof(int),1,fp);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘read_words’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2144:5: note: in expansion of macro ‘FREAD_UINT8’
 2144 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2150:5: note: in expansion of macro ‘FREAD_UINT’
 2150 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
../../src/iit-read.c: In function ‘read_annotations’:
../../src/iit-read.c:2482:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2482 |     read(new->fd,new->valueorder,new->total_nintervals*sizeof(int));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2486:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2486 |     read(new->fd,new->values,new->value_length*sizeof(char));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2491:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2491 |   read(new->fd,new->labelorder,new->total_nintervals*sizeof(int));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2497:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2497 |     read(new->fd,new->labelpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2502:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2502 |     read(new->fd,new->labelpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2513:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2513 |   read(new->fd,new->labels,new->label_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2519:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2519 |     read(new->fd,new->annotpointers8,(new->total_nintervals+1)*sizeof(UINT8));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2524:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2524 |     read(new->fd,new->annotpointers,(new->total_nintervals+1)*sizeof(UINT4));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2535:3: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2535 |   read(new->fd,new->annotations,new->annot_length*sizeof(char));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c: In function ‘IIT_debug’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:3524:5: note: in expansion of macro ‘FREAD_INT’
 3524 |     FREAD_INT(&new->version,fp);
      |     ^~~~~~~~~
../../src/iit-read.c: In function ‘read_words_debug’:
../../src/littleendian.h:29:27: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   29 | #define FREAD_UINT8(p,fp) fread(p,sizeof(UINT8),1,fp)
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2288:5: note: in expansion of macro ‘FREAD_UINT8’
 2288 |     FREAD_UINT8(&length8,fp);
      |     ^~~~~~~~~~~
../../src/littleendian.h:24:26: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   24 | #define FREAD_UINT(p,fp) fread(p,sizeof(UINT4),1,fp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/iit-read.c:2293:5: note: in expansion of macro ‘FREAD_UINT’
 2293 |     FREAD_UINT(&length,fp);
      |     ^~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-reader.o `test -f 'reader.c' || echo '../../src/'`reader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomicpos.o `test -f 'genomicpos.c' || echo '../../src/'`genomicpos.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-compress.o `test -f 'compress.c' || echo '../../src/'`compress.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genome.o `test -f 'genome.c' || echo '../../src/'`genome.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-transcriptome.o `test -f 'transcriptome.c' || echo '../../src/'`transcriptome.c
In file included from ../../src/transcriptome.c:28:
../../src/transcriptome.c: In function ‘Transcriptome_new’:
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:135:5: note: in expansion of macro ‘FREAD_INT’
  135 |     FREAD_INT(&trnum,fp);
      |     ^~~~~~~~~
../../src/littleendian.h:23:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   23 | #define FREAD_INT(p,fp) fread(p,sizeof(int),1,fp)
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
../../src/transcriptome.c:155:5: note: in expansion of macro ‘FREAD_INT’
  155 |     FREAD_INT(&divint,fp);
      |     ^~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-popcount.o `test -f 'popcount.c' || echo '../../src/'`popcount.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits.o `test -f 'genomebits.c' || echo '../../src/'`genomebits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits_consec.o `test -f 'genomebits_consec.c' || echo '../../src/'`genomebits_consec.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits_count.o `test -f 'genomebits_count.c' || echo '../../src/'`genomebits_count.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits_kmer.o `test -f 'genomebits_kmer.c' || echo '../../src/'`genomebits_kmer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits_indel.o `test -f 'genomebits_indel.c' || echo '../../src/'`genomebits_indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits_decode.o `test -f 'genomebits_decode.c' || echo '../../src/'`genomebits_decode.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits_mismatches.o `test -f 'genomebits_mismatches.c' || echo '../../src/'`genomebits_mismatches.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genomebits_trim.o `test -f 'genomebits_trim.c' || echo '../../src/'`genomebits_trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-dinucl_bits.o `test -f 'dinucl_bits.c' || echo '../../src/'`dinucl_bits.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-genome_sites.o `test -f 'genome_sites.c' || echo '../../src/'`genome_sites.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-bitpack64-read.o `test -f 'bitpack64-read.c' || echo '../../src/'`bitpack64-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo '../../src/'`bitpack64-readtwo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-mergeinfo.o `test -f 'mergeinfo.c' || echo '../../src/'`mergeinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo '../../src/'`merge-diagonals-heap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-merge-uint8.o `test -f 'merge-uint8.c' || echo '../../src/'`merge-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo '../../src/'`merge-diagonals-simd-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-merge-uint4.o `test -f 'merge-uint4.c' || echo '../../src/'`merge-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo '../../src/'`merge-diagonals-simd-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-indexdb.o `test -f 'indexdb.c' || echo '../../src/'`indexdb.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-localdb-read.o `test -f 'localdb-read.c' || echo '../../src/'`localdb-read.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-oligo.o `test -f 'oligo.c' || echo '../../src/'`oligo.c
../../src/indexdb.c: In function ‘positions_read_multiple_large’:
../../src/indexdb.c:1897:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1897 |     read(positions_high_fd,buffer,1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/indexdb.c:1901:5: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1901 |     read(positions_fd,buffer,4);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-chrnum.o `test -f 'chrnum.c' || echo '../../src/'`chrnum.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-maxent_hr.o `test -f 'maxent_hr.c' || echo '../../src/'`maxent_hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-mapq.o `test -f 'mapq.c' || echo '../../src/'`mapq.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-fopen.o `test -f 'fopen.c' || echo '../../src/'`fopen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-shortread.o `test -f 'shortread.c' || echo '../../src/'`shortread.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-junction.o `test -f 'junction.c' || echo '../../src/'`junction.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-concordance.o `test -f 'concordance.c' || echo '../../src/'`concordance.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-simplepair.o `test -f 'simplepair.c' || echo '../../src/'`simplepair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-orderstat.o `test -f 'orderstat.c' || echo '../../src/'`orderstat.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intlistpool.o `test -f 'intlistpool.c' || echo '../../src/'`intlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-uintlistpool.o `test -f 'uintlistpool.c' || echo '../../src/'`uintlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-uint8listpool.o `test -f 'uint8listpool.c' || echo '../../src/'`uint8listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-listpool.o `test -f 'listpool.c' || echo '../../src/'`listpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-hitlistpool.o `test -f 'hitlistpool.c' || echo '../../src/'`hitlistpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-pathpool.o `test -f 'pathpool.c' || echo '../../src/'`pathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-auxinfopool.o `test -f 'auxinfopool.c' || echo '../../src/'`auxinfopool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intron.o `test -f 'intron.c' || echo '../../src/'`intron.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-gbuffer.o `test -f 'gbuffer.c' || echo '../../src/'`gbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-select64-common.o `test -f 'select64-common.c' || echo '../../src/'`select64-common.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-select64-ones.o `test -f 'select64-ones.c' || echo '../../src/'`select64-ones.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-select64-zeroes.o `test -f 'select64-zeroes.c' || echo '../../src/'`select64-zeroes.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-ef64.o `test -f 'ef64.c' || echo '../../src/'`ef64.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-nr-x.o `test -f 'nr-x.c' || echo '../../src/'`nr-x.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-knownsplicing.o `test -f 'knownsplicing.c' || echo '../../src/'`knownsplicing.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-knownindels.o `test -f 'knownindels.c' || echo '../../src/'`knownindels.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-splice.o `test -f 'splice.c' || echo '../../src/'`splice.c
../../src/knownsplicing.c: In function ‘Knownsplicing_new_from_dump’:
../../src/knownsplicing.c:505:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:505:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  505 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownindels.c: In function ‘Knownindels_new_from_dump’:
../../src/knownsplicing.c:537:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:537:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  537 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:569:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:569:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  569 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownsplicing.c:601:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                      ~~~^       ~~~~~~~~~~~
      |                         |       |
      |                         |       Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
../../src/knownsplicing.c:601:30: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 4 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  601 |         sscanf(line,"%llu %llu",&startpoint,&partner)
      |                           ~~~^              ~~~~~~~~
      |                              |              |
      |                              |              Univcoord_T * {aka long unsigned int *}
      |                              long long unsigned int *
      |                           %lu
../../src/knownindels.c:313:25: warning: format ‘%llu’ expects argument of type ‘long long unsigned int *’, but argument 3 has type ‘Univcoord_T *’ {aka ‘long unsigned int *’} [-Wformat=]
  313 |         sscanf(line,"%llu %d",&indel_position,&adj)
      |                      ~~~^     ~~~~~~~~~~~~~~~
      |                         |     |
      |                         |     Univcoord_T * {aka long unsigned int *}
      |                         long long unsigned int *
      |                      %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-indel.o `test -f 'indel.c' || echo '../../src/'`indel.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-spliceendsgen.o `test -f 'spliceendsgen.c' || echo '../../src/'`spliceendsgen.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-spliceends.o `test -f 'spliceends.c' || echo '../../src/'`spliceends.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-bitpack64-access.o `test -f 'bitpack64-access.c' || echo '../../src/'`bitpack64-access.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-trdiag.o `test -f 'trdiag.c' || echo '../../src/'`trdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-trdiagpool.o `test -f 'trdiagpool.c' || echo '../../src/'`trdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-tr-extension-search.o `test -f 'tr-extension-search.c' || echo '../../src/'`tr-extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-univdiag.o `test -f 'univdiag.c' || echo '../../src/'`univdiag.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-univdiagpool.o `test -f 'univdiagpool.c' || echo '../../src/'`univdiagpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-sedgesort.o `test -f 'sedgesort.c' || echo '../../src/'`sedgesort.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-auxinfo.o `test -f 'auxinfo.c' || echo '../../src/'`auxinfo.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-altsplice.o `test -f 'altsplice.c' || echo '../../src/'`altsplice.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path.o `test -f 'path.c' || echo '../../src/'`path.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-pathpair.o `test -f 'pathpair.c' || echo '../../src/'`pathpair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-solve.o `test -f 'path-solve.c' || echo '../../src/'`path-solve.c
../../src/altsplice.c: In function ‘Altsplice_print’:
../../src/altsplice.c:85:22: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
   85 |       printf(" %u,%llu(%d,%d)",splice_distance,this->coords[i],this->medial_nmismatches[i],this->distal_nmismatches[i]);
      |                   ~~~^                         ~~~~~~~~~~~~~~~
      |                      |                                     |
      |                      long long unsigned int                Univcoord_T {aka long unsigned int}
      |                   %lu
../../src/path.c: In function ‘Path_print’:
../../src/path.c:3141:33: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3141 |       printf("    >> Child %p (%u): ",this,this->main_univdiagonal);
      |                                ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                                 |              |
      |                                 unsigned int   Univcoord_T {aka long unsigned int}
      |                                %lu
../../src/path.c:3143:28: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 3 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 3143 |       printf(">> Path %p (%u): ",this,this->main_univdiagonal);
      |                           ~^          ~~~~~~~~~~~~~~~~~~~~~~~
      |                            |              |
      |                            unsigned int   Univcoord_T {aka long unsigned int}
      |                           %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-fusion.o `test -f 'path-fusion.c' || echo '../../src/'`path-fusion.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-trim.o `test -f 'path-trim.c' || echo '../../src/'`path-trim.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-eval.o `test -f 'path-eval.c' || echo '../../src/'`path-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-pathpair-eval.o `test -f 'pathpair-eval.c' || echo '../../src/'`pathpair-eval.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-print-alignment.o `test -f 'path-print-alignment.c' || echo '../../src/'`path-print-alignment.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-print-m8.o `test -f 'path-print-m8.c' || echo '../../src/'`path-print-m8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-print-sam.o `test -f 'path-print-sam.c' || echo '../../src/'`path-print-sam.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-path-learn.o `test -f 'path-learn.c' || echo '../../src/'`path-learn.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-method.o `test -f 'method.c' || echo '../../src/'`method.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-doublelist.o `test -f 'doublelist.c' || echo '../../src/'`doublelist.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-bitvector.o `test -f 'bitvector.c' || echo '../../src/'`bitvector.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-transcriptpool.o `test -f 'transcriptpool.c' || echo '../../src/'`transcriptpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-exon.o `test -f 'exon.c' || echo '../../src/'`exon.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-transcript.o `test -f 'transcript.c' || echo '../../src/'`transcript.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-trpathpool.o `test -f 'trpathpool.c' || echo '../../src/'`trpathpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-trpath.o `test -f 'trpath.c' || echo '../../src/'`trpath.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-trpath-solve.o `test -f 'trpath-solve.c' || echo '../../src/'`trpath-solve.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-trpath-convert.o `test -f 'trpath-convert.c' || echo '../../src/'`trpath-convert.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-transcriptome-search.o `test -f 'transcriptome-search.c' || echo '../../src/'`transcriptome-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-vectorpool.o `test -f 'vectorpool.c' || echo '../../src/'`vectorpool.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-repair.o `test -f 'repair.c' || echo '../../src/'`repair.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-transcript-remap.o `test -f 'transcript-remap.c' || echo '../../src/'`transcript-remap.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-transcript-velocity.o `test -f 'transcript-velocity.c' || echo '../../src/'`transcript-velocity.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-large.o `test -f 'intersect-large.c' || echo '../../src/'`intersect-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-small.o `test -f 'intersect-small.c' || echo '../../src/'`intersect-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-uint2.o `test -f 'intersect-uint2.c' || echo '../../src/'`intersect-uint2.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-approx-uint4.o `test -f 'intersect-approx-uint4.c' || echo '../../src/'`intersect-approx-uint4.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-approx-uint8.o `test -f 'intersect-approx-uint8.c' || echo '../../src/'`intersect-approx-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-approx-indices-uint8.o `test -f 'intersect-approx-indices-uint8.c' || echo '../../src/'`intersect-approx-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-wdups-indices.o `test -f 'intersect-wdups-indices.c' || echo '../../src/'`intersect-wdups-indices.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-lower-large.o `test -f 'intersect-lower-large.c' || echo '../../src/'`intersect-lower-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-higher-large.o `test -f 'intersect-higher-large.c' || echo '../../src/'`intersect-higher-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-indices-small.o `test -f 'intersect-indices-small.c' || echo '../../src/'`intersect-indices-small.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-indices2-large.o `test -f 'intersect-indices2-large.c' || echo '../../src/'`intersect-indices2-large.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-indices-uint8.o `test -f 'intersect-indices-uint8.c' || echo '../../src/'`intersect-indices-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-intersect-concordance-uint8.o `test -f 'intersect-concordance-uint8.c' || echo '../../src/'`intersect-concordance-uint8.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-kmer-search.o `test -f 'kmer-search.c' || echo '../../src/'`kmer-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-extension-search.o `test -f 'extension-search.c' || echo '../../src/'`extension-search.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-repetitive.o `test -f 'repetitive.c' || echo '../../src/'`repetitive.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-uint8table.o `test -f 'uint8table.c' || echo '../../src/'`uint8table.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-stage1hr.o `test -f 'stage1hr.c' || echo '../../src/'`stage1hr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-stage1hr-single.o `test -f 'stage1hr-single.c' || echo '../../src/'`stage1hr-single.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-stage1hr-paired.o `test -f 'stage1hr-paired.c' || echo '../../src/'`stage1hr-paired.c
../../src/stage1hr.c: In function ‘Stage1_list_extension’:
../../src/stage1hr.c:1465:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1465 |     printf("%u %d..%d\n",this->extension_gplus[i],this->extension_qstart_gplus[i],this->extension_qend_gplus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                |
      |              unsigned int                     Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1469:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1469 |     printf("%u %d..%d\n",this->extension_gminus[i],this->extension_qstart_gminus[i],this->extension_qend_gminus[i]);
      |             ~^           ~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c: In function ‘Stage1_list_exhaustive’:
../../src/stage1hr.c:1484:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1484 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1485 |            this->exhaustive_gplus[i],this->exhaustive_qstart_gplus[i],this->exhaustive_qend_gplus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                  |
      |                                  Univcoord_T {aka long unsigned int}
../../src/stage1hr.c:1490:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1490 |     printf("%u %d..%d %d\n",
      |             ~^
      |              |
      |              unsigned int
      |             %lu
 1491 |            this->exhaustive_gminus[i],this->exhaustive_qstart_gminus[i],this->exhaustive_qend_gminus[i],
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   |
      |                                   Univcoord_T {aka long unsigned int}
../../src/stage1hr.c: In function ‘Stage1_list_all_univdiagonals’:
../../src/stage1hr.c:1509:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1509 |     printf("%u\n",this->all_univdiagonals_gplus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                 |
      |              unsigned int                      Univcoord_T {aka long unsigned int}
      |             %lu
../../src/stage1hr.c:1533:14: warning: format ‘%u’ expects argument of type ‘unsigned int’, but argument 2 has type ‘Univcoord_T’ {aka ‘long unsigned int’} [-Wformat=]
 1533 |     printf("%u\n",this->all_univdiagonals_gminus[i]);
      |             ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |              |                                  |
      |              unsigned int                       Univcoord_T {aka long unsigned int}
      |             %lu
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-uint8tableuint.o `test -f 'uint8tableuint.c' || echo '../../src/'`uint8tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-tableuint.o `test -f 'tableuint.c' || echo '../../src/'`tableuint.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-single-cell.o `test -f 'single-cell.c' || echo '../../src/'`single-cell.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-request.o `test -f 'request.c' || echo '../../src/'`request.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-resulthr.o `test -f 'resulthr.c' || echo '../../src/'`resulthr.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-output.o `test -f 'output.c' || echo '../../src/'`output.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-inbuffer.o `test -f 'inbuffer.c' || echo '../../src/'`inbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-samheader.o `test -f 'samheader.c' || echo '../../src/'`samheader.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-printbuffer.o `test -f 'printbuffer.c' || echo '../../src/'`printbuffer.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-outbuffer.o `test -f 'outbuffer.c' || echo '../../src/'`outbuffer.c
../../src/samheader.c: In function ‘SAM_header_change_HD_tosorted’:
../../src/samheader.c:236:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  236 |     fread(buffer,sizeof(char),CHUNK,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../../src/samheader.c:241:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  241 |     fread(buffer,sizeof(char),headerlen,input);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-datadir.o `test -f 'datadir.c' || echo '../../src/'`datadir.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-parserange.o `test -f 'parserange.c' || echo '../../src/'`parserange.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-getline.o `test -f 'getline.c' || echo '../../src/'`getline.c
gcc -DHAVE_CONFIG_H -I. -I../../src   -Wdate-time -D_FORTIFY_SOURCE=3   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration -c -o gsnapl_avx512-gsnap.o `test -f 'gsnap.c' || echo '../../src/'`gsnap.c
gcc  -DMAIN=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cpuid cpuid-cpuid.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap gmap-cpuid.o gmap-gmap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-get-genome.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-saca-k.o gmapindex-localdb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-bytecoding.o gmapindex-sarray-write.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-popcount.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-indexdb-cat.o  -lz -lbz2 -lm 
gcc    -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-iit_store.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-iit_get.o  -lz -lbz2 -lm 
gcc   -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-iit_dump.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o  -lm 
gcc  -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration  -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o  -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-snpindex.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1257:46,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1264:22,
    inlined from ‘sort_matches_by_position’ at ../../src/iit-read.c:1250:1,
    inlined from ‘IIT_get.constprop’ at ../../src/iit-read.c:4667:14:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘IIT_get.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-cmetindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-atoiindex.o  -lz -lbz2 -lm 
gcc   -DGMAPDB=\"/var/cache/gmap\" -DUTILITYP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-popcount.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-bitpack64-readtwo.o trindex-transcriptome.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-trindex.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-dinucl_bits.o gmap_nosimd-genome_canonical.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-printbuffer.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-dinucl_bits.o gmapl_nosimd-genome_canonical.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-uint8table_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-printbuffer.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genomebits.o gsnap_nosimd-genomebits_consec.o gsnap_nosimd-genomebits_count.o gsnap_nosimd-genomebits_kmer.o gsnap_nosimd-genomebits_indel.o gsnap_nosimd-genomebits_decode.o gsnap_nosimd-genomebits_mismatches.o gsnap_nosimd-genomebits_trim.o gsnap_nosimd-dinucl_bits.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-mergeinfo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-localdb-read.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-junction.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-pathpool.o gsnap_nosimd-auxinfopool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-select64-common.o gsnap_nosimd-select64-ones.o gsnap_nosimd-select64-zeroes.o gsnap_nosimd-ef64.o gsnap_nosimd-nr-x.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-knownindels.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-spliceendsgen.o gsnap_nosimd-spliceends.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-trdiag.o gsnap_nosimd-trdiagpool.o gsnap_nosimd-tr-extension-search.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-auxinfo.o gsnap_nosimd-altsplice.o gsnap_nosimd-path.o gsnap_nosimd-pathpair.o gsnap_nosimd-path-solve.o gsnap_nosimd-path-fusion.o gsnap_nosimd-path-trim.o gsnap_nosimd-path-eval.o gsnap_nosimd-pathpair-eval.o gsnap_nosimd-path-print-alignment.o gsnap_nosimd-path-print-m8.o gsnap_nosimd-path-print-sam.o gsnap_nosimd-path-learn.o gsnap_nosimd-method.o gsnap_nosimd-doublelist.o gsnap_nosimd-bitvector.o gsnap_nosimd-transcriptpool.o gsnap_nosimd-exon.o gsnap_nosimd-transcript.o gsnap_nosimd-trpathpool.o gsnap_nosimd-trpath.o gsnap_nosimd-trpath-solve.o gsnap_nosimd-trpath-convert.o gsnap_nosimd-transcriptome-search.o gsnap_nosimd-vectorpool.o gsnap_nosimd-repair.o gsnap_nosimd-transcript-remap.o gsnap_nosimd-transcript-velocity.o gsnap_nosimd-intersect-small.o gsnap_nosimd-intersect-uint2.o gsnap_nosimd-intersect-approx-uint4.o gsnap_nosimd-intersect-approx-indices-uint4.o gsnap_nosimd-intersect-wdups-indices.o gsnap_nosimd-intersect-lower-small.o gsnap_nosimd-intersect-higher-small.o gsnap_nosimd-intersect-indices-small.o gsnap_nosimd-intersect-indices2-small.o gsnap_nosimd-intersect-concordance-uint4.o gsnap_nosimd-kmer-search.o gsnap_nosimd-extension-search.o gsnap_nosimd-repetitive.o gsnap_nosimd-uint8table.o gsnap_nosimd-uinttable.o gsnap_nosimd-stage1hr.o gsnap_nosimd-stage1hr-single.o gsnap_nosimd-stage1hr-paired.o gsnap_nosimd-uinttableuint.o gsnap_nosimd-tableuint.o gsnap_nosimd-single-cell.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-printbuffer.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genomebits.o gsnapl_nosimd-genomebits_consec.o gsnapl_nosimd-genomebits_count.o gsnapl_nosimd-genomebits_kmer.o gsnapl_nosimd-genomebits_indel.o gsnapl_nosimd-genomebits_decode.o gsnapl_nosimd-genomebits_mismatches.o gsnapl_nosimd-genomebits_trim.o gsnapl_nosimd-dinucl_bits.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-mergeinfo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-localdb-read.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-junction.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uintlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-pathpool.o gsnapl_nosimd-auxinfopool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-select64-common.o gsnapl_nosimd-select64-ones.o gsnapl_nosimd-select64-zeroes.o gsnapl_nosimd-ef64.o gsnapl_nosimd-nr-x.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-knownindels.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-spliceendsgen.o gsnapl_nosimd-spliceends.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-trdiag.o gsnapl_nosimd-trdiagpool.o gsnapl_nosimd-tr-extension-search.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-auxinfo.o gsnapl_nosimd-altsplice.o gsnapl_nosimd-path.o gsnapl_nosimd-pathpair.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-path-fusion.o gsnapl_nosimd-path-trim.o gsnapl_nosimd-path-eval.o gsnapl_nosimd-pathpair-eval.o gsnapl_nosimd-path-print-alignment.o gsnapl_nosimd-path-print-m8.o gsnapl_nosimd-path-print-sam.o gsnapl_nosimd-path-learn.o gsnapl_nosimd-method.o gsnapl_nosimd-doublelist.o gsnapl_nosimd-bitvector.o gsnapl_nosimd-transcriptpool.o gsnapl_nosimd-exon.o gsnapl_nosimd-transcript.o gsnapl_nosimd-trpathpool.o gsnapl_nosimd-trpath.o gsnapl_nosimd-trpath-solve.o gsnapl_nosimd-trpath-convert.o gsnapl_nosimd-transcriptome-search.o gsnapl_nosimd-vectorpool.o gsnapl_nosimd-repair.o gsnapl_nosimd-transcript-remap.o gsnapl_nosimd-transcript-velocity.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-intersect-small.o gsnapl_nosimd-intersect-uint2.o gsnapl_nosimd-intersect-approx-uint4.o gsnapl_nosimd-intersect-approx-uint8.o gsnapl_nosimd-intersect-approx-indices-uint8.o gsnapl_nosimd-intersect-wdups-indices.o gsnapl_nosimd-intersect-lower-large.o gsnapl_nosimd-intersect-higher-large.o gsnapl_nosimd-intersect-indices-small.o gsnapl_nosimd-intersect-indices2-large.o gsnapl_nosimd-intersect-indices-uint8.o gsnapl_nosimd-intersect-concordance-uint8.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-repetitive.o gsnapl_nosimd-uint8table.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-stage1hr-single.o gsnapl_nosimd-stage1hr-paired.o gsnapl_nosimd-uint8tableuint.o gsnapl_nosimd-tableuint.o gsnapl_nosimd-single-cell.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-printbuffer.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop.isra’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop.isra’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmap.avx512 gmap_avx512-except.o gmap_avx512-assert.o gmap_avx512-mem.o gmap_avx512-intlist.o gmap_avx512-uintlist.o gmap_avx512-list.o gmap_avx512-littleendian.o gmap_avx512-bigendian.o gmap_avx512-univinterval.o gmap_avx512-interval.o gmap_avx512-stopwatch.o gmap_avx512-semaphore.o gmap_avx512-access.o gmap_avx512-filestring.o gmap_avx512-iit-read-univ.o gmap_avx512-iit-read.o gmap_avx512-md5.o gmap_avx512-bzip2.o gmap_avx512-fopen.o gmap_avx512-sequence.o gmap_avx512-reader.o gmap_avx512-genomicpos.o gmap_avx512-compress.o gmap_avx512-compress-write.o gmap_avx512-gbuffer.o gmap_avx512-genome.o gmap_avx512-popcount.o gmap_avx512-dinucl_bits.o gmap_avx512-genome_canonical.o gmap_avx512-genome-write.o gmap_avx512-bitpack64-read.o gmap_avx512-bitpack64-readtwo.o gmap_avx512-indexdb.o gmap_avx512-oligo.o gmap_avx512-block.o gmap_avx512-chrom.o gmap_avx512-segmentpos.o gmap_avx512-chrnum.o gmap_avx512-uinttable_rh.o gmap_avx512-gregion.o gmap_avx512-match.o gmap_avx512-matchpool.o gmap_avx512-diagnostic.o gmap_avx512-stage1.o gmap_avx512-diag.o gmap_avx512-diagpool.o gmap_avx512-cmet.o gmap_avx512-atoi.o gmap_avx512-orderstat.o gmap_avx512-oligoindex_hr.o gmap_avx512-intron.o gmap_avx512-maxent.o gmap_avx512-maxent_hr.o gmap_avx512-pair.o gmap_avx512-pairpool.o gmap_avx512-cellpool.o gmap_avx512-stage2.o gmap_avx512-doublelist.o gmap_avx512-smooth.o gmap_avx512-splicestringpool.o gmap_avx512-splicetrie_build.o gmap_avx512-splicetrie.o gmap_avx512-boyer-moore.o gmap_avx512-dynprog.o gmap_avx512-dynprog_simd.o gmap_avx512-dynprog_single.o gmap_avx512-dynprog_genome.o gmap_avx512-dynprog_cdna.o gmap_avx512-dynprog_end.o gmap_avx512-translation.o gmap_avx512-pbinom.o gmap_avx512-changepoint.o gmap_avx512-stage3.o gmap_avx512-request.o gmap_avx512-result.o gmap_avx512-output.o gmap_avx512-inbuffer.o gmap_avx512-samheader.o gmap_avx512-printbuffer.o gmap_avx512-outbuffer.o gmap_avx512-chimera.o gmap_avx512-datadir.o gmap_avx512-parserange.o gmap_avx512-getline.o gmap_avx512-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gmapl.avx512 gmapl_avx512-except.o gmapl_avx512-assert.o gmapl_avx512-mem.o gmapl_avx512-intlist.o gmapl_avx512-uintlist.o gmapl_avx512-uint8list.o gmapl_avx512-list.o gmapl_avx512-littleendian.o gmapl_avx512-bigendian.o gmapl_avx512-univinterval.o gmapl_avx512-interval.o gmapl_avx512-stopwatch.o gmapl_avx512-semaphore.o gmapl_avx512-access.o gmapl_avx512-filestring.o gmapl_avx512-iit-read-univ.o gmapl_avx512-iit-read.o gmapl_avx512-md5.o gmapl_avx512-bzip2.o gmapl_avx512-fopen.o gmapl_avx512-sequence.o gmapl_avx512-reader.o gmapl_avx512-genomicpos.o gmapl_avx512-compress.o gmapl_avx512-compress-write.o gmapl_avx512-gbuffer.o gmapl_avx512-genome.o gmapl_avx512-popcount.o gmapl_avx512-dinucl_bits.o gmapl_avx512-genome_canonical.o gmapl_avx512-genome-write.o gmapl_avx512-bitpack64-read.o gmapl_avx512-bitpack64-readtwo.o gmapl_avx512-indexdb.o gmapl_avx512-oligo.o gmapl_avx512-block.o gmapl_avx512-chrom.o gmapl_avx512-segmentpos.o gmapl_avx512-chrnum.o gmapl_avx512-uinttable_rh.o gmapl_avx512-uint8table_rh.o gmapl_avx512-gregion.o gmapl_avx512-match.o gmapl_avx512-matchpool.o gmapl_avx512-diagnostic.o gmapl_avx512-stage1.o gmapl_avx512-diag.o gmapl_avx512-diagpool.o gmapl_avx512-cmet.o gmapl_avx512-atoi.o gmapl_avx512-orderstat.o gmapl_avx512-oligoindex_hr.o gmapl_avx512-intron.o gmapl_avx512-maxent.o gmapl_avx512-maxent_hr.o gmapl_avx512-pair.o gmapl_avx512-pairpool.o gmapl_avx512-cellpool.o gmapl_avx512-stage2.o gmapl_avx512-doublelist.o gmapl_avx512-smooth.o gmapl_avx512-splicestringpool.o gmapl_avx512-splicetrie_build.o gmapl_avx512-splicetrie.o gmapl_avx512-boyer-moore.o gmapl_avx512-dynprog.o gmapl_avx512-dynprog_simd.o gmapl_avx512-dynprog_single.o gmapl_avx512-dynprog_genome.o gmapl_avx512-dynprog_cdna.o gmapl_avx512-dynprog_end.o gmapl_avx512-translation.o gmapl_avx512-pbinom.o gmapl_avx512-changepoint.o gmapl_avx512-stage3.o gmapl_avx512-request.o gmapl_avx512-result.o gmapl_avx512-output.o gmapl_avx512-inbuffer.o gmapl_avx512-samheader.o gmapl_avx512-printbuffer.o gmapl_avx512-outbuffer.o gmapl_avx512-chimera.o gmapl_avx512-datadir.o gmapl_avx512-parserange.o gmapl_avx512-getline.o gmapl_avx512-gmap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnap.avx512 gsnap_avx512-except.o gsnap_avx512-assert.o gsnap_avx512-mem.o gsnap_avx512-intlist.o gsnap_avx512-uintlist.o gsnap_avx512-list.o gsnap_avx512-littleendian.o gsnap_avx512-bigendian.o gsnap_avx512-univinterval.o gsnap_avx512-interval.o gsnap_avx512-stopwatch.o gsnap_avx512-semaphore.o gsnap_avx512-access.o gsnap_avx512-filestring.o gsnap_avx512-iit-read-univ.o gsnap_avx512-iit-read.o gsnap_avx512-bzip2.o gsnap_avx512-reader.o gsnap_avx512-genomicpos.o gsnap_avx512-compress.o gsnap_avx512-genome.o gsnap_avx512-transcriptome.o gsnap_avx512-popcount.o gsnap_avx512-genomebits.o gsnap_avx512-genomebits_consec.o gsnap_avx512-genomebits_count.o gsnap_avx512-genomebits_kmer.o gsnap_avx512-genomebits_indel.o gsnap_avx512-genomebits_decode.o gsnap_avx512-genomebits_mismatches.o gsnap_avx512-genomebits_trim.o gsnap_avx512-dinucl_bits.o gsnap_avx512-genome_sites.o gsnap_avx512-bitpack64-read.o gsnap_avx512-bitpack64-readtwo.o gsnap_avx512-mergeinfo.o gsnap_avx512-merge-uint4.o gsnap_avx512-merge-diagonals-simd-uint4.o gsnap_avx512-indexdb.o gsnap_avx512-localdb-read.o gsnap_avx512-oligo.o gsnap_avx512-chrnum.o gsnap_avx512-maxent_hr.o gsnap_avx512-mapq.o gsnap_avx512-fopen.o gsnap_avx512-shortread.o gsnap_avx512-junction.o gsnap_avx512-concordance.o gsnap_avx512-simplepair.o gsnap_avx512-orderstat.o gsnap_avx512-intlistpool.o gsnap_avx512-uintlistpool.o gsnap_avx512-listpool.o gsnap_avx512-hitlistpool.o gsnap_avx512-pathpool.o gsnap_avx512-auxinfopool.o gsnap_avx512-intron.o gsnap_avx512-gbuffer.o gsnap_avx512-select64-common.o gsnap_avx512-select64-ones.o gsnap_avx512-select64-zeroes.o gsnap_avx512-ef64.o gsnap_avx512-nr-x.o gsnap_avx512-knownsplicing.o gsnap_avx512-knownindels.o gsnap_avx512-splice.o gsnap_avx512-indel.o gsnap_avx512-spliceendsgen.o gsnap_avx512-spliceends.o gsnap_avx512-bitpack64-access.o gsnap_avx512-trdiag.o gsnap_avx512-trdiagpool.o gsnap_avx512-tr-extension-search.o gsnap_avx512-univdiag.o gsnap_avx512-univdiagpool.o gsnap_avx512-sedgesort.o gsnap_avx512-auxinfo.o gsnap_avx512-altsplice.o gsnap_avx512-path.o gsnap_avx512-pathpair.o gsnap_avx512-path-solve.o gsnap_avx512-path-fusion.o gsnap_avx512-path-trim.o gsnap_avx512-path-eval.o gsnap_avx512-pathpair-eval.o gsnap_avx512-path-print-alignment.o gsnap_avx512-path-print-m8.o gsnap_avx512-path-print-sam.o gsnap_avx512-path-learn.o gsnap_avx512-method.o gsnap_avx512-doublelist.o gsnap_avx512-bitvector.o gsnap_avx512-transcriptpool.o gsnap_avx512-exon.o gsnap_avx512-transcript.o gsnap_avx512-trpathpool.o gsnap_avx512-trpath.o gsnap_avx512-trpath-solve.o gsnap_avx512-trpath-convert.o gsnap_avx512-transcriptome-search.o gsnap_avx512-vectorpool.o gsnap_avx512-repair.o gsnap_avx512-transcript-remap.o gsnap_avx512-transcript-velocity.o gsnap_avx512-intersect-small.o gsnap_avx512-intersect-uint2.o gsnap_avx512-intersect-approx-uint4.o gsnap_avx512-intersect-approx-indices-uint4.o gsnap_avx512-intersect-wdups-indices.o gsnap_avx512-intersect-lower-small.o gsnap_avx512-intersect-higher-small.o gsnap_avx512-intersect-indices-small.o gsnap_avx512-intersect-indices2-small.o gsnap_avx512-intersect-concordance-uint4.o gsnap_avx512-kmer-search.o gsnap_avx512-extension-search.o gsnap_avx512-repetitive.o gsnap_avx512-uint8table.o gsnap_avx512-uinttable.o gsnap_avx512-stage1hr.o gsnap_avx512-stage1hr-single.o gsnap_avx512-stage1hr-paired.o gsnap_avx512-uinttableuint.o gsnap_avx512-tableuint.o gsnap_avx512-single-cell.o gsnap_avx512-request.o gsnap_avx512-resulthr.o gsnap_avx512-output.o gsnap_avx512-inbuffer.o gsnap_avx512-samheader.o gsnap_avx512-printbuffer.o gsnap_avx512-outbuffer.o gsnap_avx512-datadir.o gsnap_avx512-parserange.o gsnap_avx512-getline.o gsnap_avx512-gsnap.o  -lz -lbz2 -lm 
gcc   -DTARGET=\"x86_64-pc-linux-gnu\" -DGMAPDB=\"/var/cache/gmap\" -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -DHAVE_AVX512=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -mavx512f -mavx512cd -mavx512vl -mavx512bw -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/gmap-2024-02-22+ds-1build1 -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -Werror=implicit-function-declaration   -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o gsnapl.avx512 gsnapl_avx512-except.o gsnapl_avx512-assert.o gsnapl_avx512-mem.o gsnapl_avx512-intlist.o gsnapl_avx512-uintlist.o gsnapl_avx512-uint8list.o gsnapl_avx512-list.o gsnapl_avx512-littleendian.o gsnapl_avx512-bigendian.o gsnapl_avx512-univinterval.o gsnapl_avx512-interval.o gsnapl_avx512-stopwatch.o gsnapl_avx512-semaphore.o gsnapl_avx512-access.o gsnapl_avx512-filestring.o gsnapl_avx512-iit-read-univ.o gsnapl_avx512-iit-read.o gsnapl_avx512-bzip2.o gsnapl_avx512-reader.o gsnapl_avx512-genomicpos.o gsnapl_avx512-compress.o gsnapl_avx512-genome.o gsnapl_avx512-transcriptome.o gsnapl_avx512-popcount.o gsnapl_avx512-genomebits.o gsnapl_avx512-genomebits_consec.o gsnapl_avx512-genomebits_count.o gsnapl_avx512-genomebits_kmer.o gsnapl_avx512-genomebits_indel.o gsnapl_avx512-genomebits_decode.o gsnapl_avx512-genomebits_mismatches.o gsnapl_avx512-genomebits_trim.o gsnapl_avx512-dinucl_bits.o gsnapl_avx512-genome_sites.o gsnapl_avx512-bitpack64-read.o gsnapl_avx512-bitpack64-readtwo.o gsnapl_avx512-mergeinfo.o gsnapl_avx512-merge-diagonals-heap.o gsnapl_avx512-merge-uint8.o gsnapl_avx512-merge-diagonals-simd-uint8.o gsnapl_avx512-merge-uint4.o gsnapl_avx512-merge-diagonals-simd-uint4.o gsnapl_avx512-indexdb.o gsnapl_avx512-localdb-read.o gsnapl_avx512-oligo.o gsnapl_avx512-chrnum.o gsnapl_avx512-maxent_hr.o gsnapl_avx512-mapq.o gsnapl_avx512-fopen.o gsnapl_avx512-shortread.o gsnapl_avx512-junction.o gsnapl_avx512-concordance.o gsnapl_avx512-simplepair.o gsnapl_avx512-orderstat.o gsnapl_avx512-intlistpool.o gsnapl_avx512-uintlistpool.o gsnapl_avx512-uint8listpool.o gsnapl_avx512-listpool.o gsnapl_avx512-hitlistpool.o gsnapl_avx512-pathpool.o gsnapl_avx512-auxinfopool.o gsnapl_avx512-intron.o gsnapl_avx512-gbuffer.o gsnapl_avx512-select64-common.o gsnapl_avx512-select64-ones.o gsnapl_avx512-select64-zeroes.o gsnapl_avx512-ef64.o gsnapl_avx512-nr-x.o gsnapl_avx512-knownsplicing.o gsnapl_avx512-knownindels.o gsnapl_avx512-splice.o gsnapl_avx512-indel.o gsnapl_avx512-spliceendsgen.o gsnapl_avx512-spliceends.o gsnapl_avx512-bitpack64-access.o gsnapl_avx512-trdiag.o gsnapl_avx512-trdiagpool.o gsnapl_avx512-tr-extension-search.o gsnapl_avx512-univdiag.o gsnapl_avx512-univdiagpool.o gsnapl_avx512-sedgesort.o gsnapl_avx512-auxinfo.o gsnapl_avx512-altsplice.o gsnapl_avx512-path.o gsnapl_avx512-pathpair.o gsnapl_avx512-path-solve.o gsnapl_avx512-path-fusion.o gsnapl_avx512-path-trim.o gsnapl_avx512-path-eval.o gsnapl_avx512-pathpair-eval.o gsnapl_avx512-path-print-alignment.o gsnapl_avx512-path-print-m8.o gsnapl_avx512-path-print-sam.o gsnapl_avx512-path-learn.o gsnapl_avx512-method.o gsnapl_avx512-doublelist.o gsnapl_avx512-bitvector.o gsnapl_avx512-transcriptpool.o gsnapl_avx512-exon.o gsnapl_avx512-transcript.o gsnapl_avx512-trpathpool.o gsnapl_avx512-trpath.o gsnapl_avx512-trpath-solve.o gsnapl_avx512-trpath-convert.o gsnapl_avx512-transcriptome-search.o gsnapl_avx512-vectorpool.o gsnapl_avx512-repair.o gsnapl_avx512-transcript-remap.o gsnapl_avx512-transcript-velocity.o gsnapl_avx512-intersect-large.o gsnapl_avx512-intersect-small.o gsnapl_avx512-intersect-uint2.o gsnapl_avx512-intersect-approx-uint4.o gsnapl_avx512-intersect-approx-uint8.o gsnapl_avx512-intersect-approx-indices-uint8.o gsnapl_avx512-intersect-wdups-indices.o gsnapl_avx512-intersect-lower-large.o gsnapl_avx512-intersect-higher-large.o gsnapl_avx512-intersect-indices-small.o gsnapl_avx512-intersect-indices2-large.o gsnapl_avx512-intersect-indices-uint8.o gsnapl_avx512-intersect-concordance-uint8.o gsnapl_avx512-kmer-search.o gsnapl_avx512-extension-search.o gsnapl_avx512-repetitive.o gsnapl_avx512-uint8table.o gsnapl_avx512-stage1hr.o gsnapl_avx512-stage1hr-single.o gsnapl_avx512-stage1hr-paired.o gsnapl_avx512-uint8tableuint.o gsnapl_avx512-tableuint.o gsnapl_avx512-single-cell.o gsnapl_avx512-request.o gsnapl_avx512-resulthr.o gsnapl_avx512-output.o gsnapl_avx512-inbuffer.o gsnapl_avx512-samheader.o gsnapl_avx512-printbuffer.o gsnapl_avx512-outbuffer.o gsnapl_avx512-datadir.o gsnapl_avx512-parserange.o gsnapl_avx512-getline.o gsnapl_avx512-gsnap.o  -lz -lbz2 -lm 
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
In function ‘Mem_calloc’,
    inlined from ‘merge_known_novel’ at ../../src/spliceends.c:915:24,
    inlined from ‘solve_trim3.constprop’ at ../../src/spliceends.c:2738:23:
../../src/mem.c:702:9: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  702 |   ptr = calloc(count,nbytes);
      |         ^
/usr/include/stdlib.h: In function ‘solve_trim3.constprop’:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
  675 | extern void *calloc (size_t __nmemb, size_t __size)
      |              ^
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/src'
Making all in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/util'
cp gmap_process.pl gmap_process
cp gmap_build.pl gmap_build
cp gmap_cat.pl gmap_cat
cp md_coords.pl md_coords
chmod +x gmap_process
chmod +x gmap_build
chmod +x gmap_cat
chmod +x md_coords
cp fa_coords.pl fa_coords
cp psl_splicesites.pl psl_splicesites
cp psl_introns.pl psl_introns
cp psl_genes.pl psl_genes
chmod +x fa_coords
chmod +x psl_splicesites
chmod +x psl_introns
chmod +x psl_genes
cp ensembl_genes.pl ensembl_genes
cp gtf_splicesites.pl gtf_splicesites
cp gtf_introns.pl gtf_introns
cp gtf_genes.pl gtf_genes
chmod +x ensembl_genes
chmod +x gtf_splicesites
chmod +x gtf_introns
chmod +x gtf_genes
cp gtf_transcript_splicesites.pl gtf_transcript_splicesites
cp gff3_splicesites.pl gff3_splicesites
cp gff3_introns.pl gff3_introns
cp gff3_genes.pl gff3_genes
chmod +x gtf_transcript_splicesites
chmod +x gff3_splicesites
chmod +x gff3_introns
chmod +x gff3_genes
cp dbsnp_iit.pl dbsnp_iit
cp gvf_iit.pl gvf_iit
cp vcf_iit.pl vcf_iit
chmod +x dbsnp_iit
chmod +x gvf_iit
chmod +x vcf_iit
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/util'
Making all in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/tests'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test --no-parallel
	cd build && make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
Making check in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/src'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/src'
Making check in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/util'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/util'
Making check in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/tests'
make  check-TESTS
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/tests'
make[5]: Entering directory '/<<PKGBUILDDIR>>/build/tests'
PASS: align.test
PASS: coords1.test
PASS: setup1.test
PASS: iit.test
============================================================================
Testsuite summary for gmap 2024-02-22
============================================================================
# TOTAL: 4
# PASS:  4
# SKIP:  0
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[5]: Leaving directory '/<<PKGBUILDDIR>>/build/tests'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/tests'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--builddir=build
   dh_prep -O--builddir=build
   debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/gmap/usr/share/man/man1
/usr/bin/help2man --no-info --version-string=2024-02-22+ds-1build1 --name='Genomic Mapping and Alignment Program' \
/<<PKGBUILDDIR>>/build/src/gmap |debian/filter.pl >/<<PKGBUILDDIR>>/debian/gmap/usr/share/man/man1/gmap.1
/usr/bin/help2man --no-info --version-string=2024-02-22+ds-1build1 --name='Genomic Short-read Nucleotide Alignment Program' \
/<<PKGBUILDDIR>>/build/src/gsnap |debian/filter.pl >/<<PKGBUILDDIR>>/debian/gmap/usr/share/man/man1/gsnap.1
/usr/bin/help2man --no-info --version-string=2024-02-22+ds-1build1 --name='Large Genome Mapping and Alignment Program' \
/<<PKGBUILDDIR>>/build/src/gmapl |debian/filter.pl >/<<PKGBUILDDIR>>/debian/gmap/usr/share/man/man1/gmapl.1
/usr/bin/help2man --no-info --version-string=2024-02-22+ds-1build1 --name='Large Genome Short-read Nucleotide Alignment Program' \
/<<PKGBUILDDIR>>/build/src/gsnapl |debian/filter.pl >/<<PKGBUILDDIR>>/debian/gmap/usr/share/man/man1/gsnapl.1
/usr/bin/help2man --no-info --version-string=2024-02-22+ds-1build1 --name='Tool for genome database creation for GMAP or GSNAP' \
/<<PKGBUILDDIR>>/build/util/gmap_build |debian/filter.pl >/<<PKGBUILDDIR>>/debian/gmap/usr/share/man/man1/gmap_build.1
dh_auto_install --builddir build_avx512
	cd build_avx512 && make -j4 install DESTDIR=/<<BUILDDIR>>/gmap-2024-02-22\+ds/debian/gmap AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_avx512'
Making install in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/src'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
  /usr/bin/install -c cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd gmap.avx512 gmapl.avx512 gsnap.avx512 gsnapl.avx512 '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/src'
Making install in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/util'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/util'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
 /usr/bin/install -c gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/util'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/util'
Making install in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/tests'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx512/tests'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/tests'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx512'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx512'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/bash /<<PKGBUILDDIR>>/config/install-sh -d /<<PKGBUILDDIR>>/debian/gmap/var/cache/gmap
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_avx512'
dh_auto_install --builddir build_avx2
	cd build_avx2 && make -j4 install DESTDIR=/<<BUILDDIR>>/gmap-2024-02-22\+ds/debian/gmap AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_avx2'
Making install in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/src'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
  /usr/bin/install -c cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd gmap.avx2 gmapl.avx2 gsnap.avx2 gsnapl.avx2 '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/src'
Making install in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/util'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/util'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
 /usr/bin/install -c gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/util'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/util'
Making install in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/tests'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx2/tests'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/tests'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_avx2'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_avx2'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/bash /<<PKGBUILDDIR>>/config/install-sh -d /<<PKGBUILDDIR>>/debian/gmap/var/cache/gmap
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_avx2'
dh_auto_install --builddir build_sse42
	cd build_sse42 && make -j4 install DESTDIR=/<<BUILDDIR>>/gmap-2024-02-22\+ds/debian/gmap AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_sse42'
Making install in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/src'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
  /usr/bin/install -c cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd gmap.sse42 gmapl.sse42 gsnap.sse42 gsnapl.sse42 '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/src'
Making install in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/util'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/util'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
 /usr/bin/install -c gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/util'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/util'
Making install in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/tests'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse42/tests'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/tests'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse42'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse42'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/bash /<<PKGBUILDDIR>>/config/install-sh -d /<<PKGBUILDDIR>>/debian/gmap/var/cache/gmap
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_sse42'
dh_auto_install --builddir build_sse41
	cd build_sse41 && make -j4 install DESTDIR=/<<BUILDDIR>>/gmap-2024-02-22\+ds/debian/gmap AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_sse41'
Making install in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/src'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
  /usr/bin/install -c cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd gmap.sse41 gmapl.sse41 gsnap.sse41 gsnapl.sse41 '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/src'
Making install in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/util'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/util'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
 /usr/bin/install -c gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/util'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/util'
Making install in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/tests'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse41/tests'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/tests'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_sse41'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_sse41'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/bash /<<PKGBUILDDIR>>/config/install-sh -d /<<PKGBUILDDIR>>/debian/gmap/var/cache/gmap
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_sse41'
dh_auto_install --builddir build_ssse3
	cd build_ssse3 && make -j4 install DESTDIR=/<<BUILDDIR>>/gmap-2024-02-22\+ds/debian/gmap AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3'
Making install in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/src'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
  /usr/bin/install -c cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd gmap.ssse3 gmapl.ssse3 gsnap.ssse3 gsnapl.ssse3 '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/src'
Making install in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/util'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/util'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
 /usr/bin/install -c gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/util'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/util'
Making install in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/tests'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3/tests'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/tests'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build_ssse3'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/bash /<<PKGBUILDDIR>>/config/install-sh -d /<<PKGBUILDDIR>>/debian/gmap/var/cache/gmap
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build_ssse3'
dh_auto_install
	cd build && make -j4 install DESTDIR=/<<BUILDDIR>>/gmap-2024-02-22\+ds/debian/gmap AM_UPDATE_INFO_DIR=no
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
Making install in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/src'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/src'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
  /usr/bin/install -c cpuid gmap gmapl get-genome gmapindex indexdb_cat iit_store iit_get iit_dump gsnap gsnapl snpindex cmetindex atoiindex trindex gmap.nosimd gmapl.nosimd gsnap.nosimd gsnapl.nosimd gmap.sse2 gmapl.sse2 gsnap.sse2 gsnapl.sse2 '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/src'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/src'
Making install in util
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/util'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/util'
make[4]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
 /usr/bin/install -c gmap_process gmap_build gmap_cat md_coords fa_coords psl_splicesites psl_introns psl_genes ensembl_genes gtf_splicesites gtf_introns gtf_genes gtf_transcript_splicesites gff3_splicesites gff3_introns gff3_genes dbsnp_iit gvf_iit vcf_iit '/<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/util'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/util'
Making install in tests
make[3]: Entering directory '/<<PKGBUILDDIR>>/build/tests'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build/tests'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build/tests'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build/tests'
make[3]: Entering directory '/<<PKGBUILDDIR>>/build'
make[4]: Entering directory '/<<PKGBUILDDIR>>/build'
make[4]: Nothing to be done for 'install-exec-am'.
/bin/bash /<<PKGBUILDDIR>>/config/install-sh -d /<<PKGBUILDDIR>>/debian/gmap/var/cache/gmap
make[4]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/gmap/usr/bin
dh_install
for bin in `echo gmap gsnap gmap_build gmapl gsnapl; \
	cd /<<PKGBUILDDIR>>/debian/gmap/usr/lib/gmap/; \
	ls -1 gmap*.* gsnap*.* `; do \
	ln -s /usr/lib/gmap/$bin debian/gmap/usr/bin/$bin; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -O--builddir=build
   dh_installchangelogs -O--builddir=build
   debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir /<<PKGBUILDDIR>>/debian/gmap/usr/share/doc/gmap/examples
find tests/ -type f -print0 | xargs -0r sed -i \
	-e 's@/<<PKGBUILDDIR>>@«buildpath»@g' \
	-e 's@\#! /bin/bash@\#! /bin/sh@g'
tar --sort=name \
	--mtime="@1711864864" \
	--owner=root --group=root --numeric-owner \
	--mode=go=rX,u+rw,a-s \
	--exclude='*/align.log' \
	--exclude='*/Makefile' \
	--exclude='*/Makefile.in' \
	-cJf /<<PKGBUILDDIR>>/debian/gmap/usr/share/doc/gmap/examples/tests.tar.xz  tests
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installman -O--builddir=build
   dh_installsystemduser -O--builddir=build
   dh_lintian -O--builddir=build
   dh_perl -O--builddir=build
   dh_link -O--builddir=build
   dh_strip_nondeterminism -O--builddir=build
   dh_compress -O--builddir=build
   dh_fixperms -O--builddir=build
   dh_missing -O--builddir=build
   dh_dwz -a -O--builddir=build
   dh_strip -a -O--builddir=build
debugedit: debian/gmap/usr/lib/gmap/indexdb_cat: Unknown DWARF DW_FORM_0x1f20
799cd025b7cc37673d91f9c4c3bd511741998ba9
debugedit: debian/gmap/usr/lib/gmap/gmap: Unknown DWARF DW_FORM_0x1f20
4dfdd978fec8515668a94dd3b6ef62e9b81174d0
debugedit: debian/gmap/usr/lib/gmap/iit_store: Unknown DWARF DW_FORM_0x1f21
86dd1938d714abf839d7f95a5e6c814b282375d1
debugedit: debian/gmap/usr/lib/gmap/gsnapl.nosimd: Unknown DWARF DW_FORM_0x1f21
a6361c6a5793e12d0df437ade8481c4b866f43d2
debugedit: debian/gmap/usr/lib/gmap/cmetindex: Unknown DWARF DW_FORM_0x1f20
a03cee8e97f8e81638d5cecb815d51e4e7fa81d5
debugedit: debian/gmap/usr/lib/gmap/gmap.sse2: Unknown DWARF DW_FORM_0x1f20
dd9c48b251f068e24cd0831513958fa1c25224f9
debugedit: debian/gmap/usr/lib/gmap/atoiindex: Unknown DWARF DW_FORM_0x1f20
7309268f64392ae65d33a527c185497159355e58
debugedit: debian/gmap/usr/lib/gmap/gsnapl.ssse3: Unknown DWARF DW_FORM_0x1f21
17d62aef1e716d022bec7e42d7fd6d736d6bd529
debugedit: debian/gmap/usr/lib/gmap/gmapl.sse42: Unknown DWARF DW_FORM_0x1f21
8e7723f09d62e353df7c2fee05b954d5e7871aa4
debugedit: debian/gmap/usr/lib/gmap/gsnap.sse2: Unknown DWARF DW_FORM_0x1f20
e52011b9e5fcd3b16bce95a03162f46a6a395482
debugedit: debian/gmap/usr/lib/gmap/gsnap.sse41: Unknown DWARF DW_FORM_0x1f20
6fec0549b6135d2405a39a094c30082f190230ff
debugedit: debian/gmap/usr/lib/gmap/trindex: Unknown DWARF DW_FORM_0x1f20
90c31b3bac1cfe54374a2e1720b96719802f7cd0
debugedit: debian/gmap/usr/lib/gmap/gmapindex: Unknown DWARF DW_FORM_0x1f20
ff94070786005f75ef990f93f3525a52c67f6421
debugedit: debian/gmap/usr/lib/gmap/gsnap: Unknown DWARF DW_FORM_0x1f20
2ac89687d43db1c07309006b59e7300b6a73808b
debugedit: debian/gmap/usr/lib/gmap/gsnap.nosimd: Unknown DWARF DW_FORM_0x1f20
939c068bbb70700a8c82442a002e32c08911e2f3
debugedit: debian/gmap/usr/lib/gmap/gmapl.sse2: Unknown DWARF DW_FORM_0x1f20
400cc36bc59bad606ecfc9a29acaa896130fdda5
debugedit: debian/gmap/usr/lib/gmap/gmapl.sse41: Unknown DWARF DW_FORM_0x1f21
b68dbda3af214ae64c88c1fdb567d3e91d97d078
debugedit: debian/gmap/usr/lib/gmap/gsnap.avx2: Unknown DWARF DW_FORM_0x1f21
eb2bc7c449220c7fc0996313093c11aa4e90c248
debugedit: debian/gmap/usr/lib/gmap/gmapl.ssse3: Unknown DWARF DW_FORM_0x1f21
4900f23bc8abb7c1bdbb3c4d104deb7d1b46a616
debugedit: debian/gmap/usr/lib/gmap/snpindex: Unknown DWARF DW_FORM_0x1f20
96f68f82ed96ed567bd5e3dfd79fd0e3c9561024
debugedit: debian/gmap/usr/lib/gmap/gmap.sse41: Unknown DWARF DW_FORM_0x1f21
d710e5cb1913d8bee83d7775d12befafd82daec7
debugedit: debian/gmap/usr/lib/gmap/get-genome: Unknown DWARF DW_FORM_0x1f21
5d889f9f56514b12c03b21cc8daa1e8b255aea1e
debugedit: debian/gmap/usr/lib/gmap/gmapl.avx512: Unknown DWARF DW_FORM_0x1f20
1e3418331ea14083e3ef8b1d1d2c660aa65122f2
debugedit: debian/gmap/usr/lib/gmap/gmap.avx2: Unknown DWARF DW_FORM_0x1f20
9036df0fbc74543d54dfe51a1780bebec4f25e2a
debugedit: debian/gmap/usr/lib/gmap/gsnapl.sse42: Unknown DWARF DW_FORM_0x1f20
392b67619a33ad752d834e121f46e22bd7d076c9
debugedit: debian/gmap/usr/lib/gmap/gsnap.ssse3: Unknown DWARF DW_FORM_0x1f20
8f4a8ea13232736d6c500170e418d677f49d26d5
debugedit: debian/gmap/usr/lib/gmap/gsnapl.sse2: Unknown DWARF DW_FORM_0x1f21
fd5f1e123bd3fade5ea9ed7cbb964f45d7f6ce67
debugedit: debian/gmap/usr/lib/gmap/gmap.avx512: Unknown DWARF DW_FORM_0x1f20
cf032555aec6cb4df73a658c490218661f43aba3
debugedit: debian/gmap/usr/lib/gmap/gmapl: Unknown DWARF DW_FORM_0x1f20
b88d45774ed1cfb59f2b7f734a5e50d09fc5b46a
debugedit: debian/gmap/usr/lib/gmap/gsnap.sse42: Unknown DWARF DW_FORM_0x1f21
a3519b3a2eae69d87fdf17660ded9e690f46417b
debugedit: debian/gmap/usr/lib/gmap/gmap.sse42: Unknown DWARF DW_FORM_0x1f21
4056e070b67b937b023ba7a3d3ec0930efbf159f
debugedit: debian/gmap/usr/lib/gmap/gmapl.avx2: Unknown DWARF DW_FORM_0x1f20
badcd717ef40542859a4d0095d633c88bc0f8fd4
debugedit: debian/gmap/usr/lib/gmap/iit_get: Unknown DWARF DW_FORM_0x1f20
a828f88bf8e976ca79a0c8c70a0bc141c946c1cf
debugedit: debian/gmap/usr/lib/gmap/gsnapl.sse41: Unknown DWARF DW_FORM_0x1f21
b4f543a57a414404d9e84cc89744450bb72ada90
debugedit: debian/gmap/usr/lib/gmap/gmapl.nosimd: Unknown DWARF DW_FORM_0x1f20
c72462d83bb74e2f3b2e407513b9262654169feb
debugedit: debian/gmap/usr/lib/gmap/gsnap.avx512: Unknown DWARF DW_FORM_0x1f21
2478b00b5a1b36cdc1887daf9dd964a1e328f3e3
debugedit: debian/gmap/usr/lib/gmap/gsnapl.avx2: Unknown DWARF DW_FORM_0x1f21
594a5ac5e81cfb933cd3431f40318bff10c0507b
debugedit: debian/gmap/usr/lib/gmap/gsnapl: Unknown DWARF DW_FORM_0x1f20
bd463f12afe0d87fa795e6547d8d7ec428cc2ef0
debugedit: debian/gmap/usr/lib/gmap/gmap.nosimd: Unknown DWARF DW_FORM_0x1f21
5120540d5861ac28246bfee4fa7902f1c04d48fe
debugedit: debian/gmap/usr/lib/gmap/gmap.ssse3: Unknown DWARF DW_FORM_0x1f21
aeadb8cc3188ada2fcde5cc19c22d9b3e0cb73e6
debugedit: debian/gmap/usr/lib/gmap/gsnapl.avx512: Unknown DWARF DW_FORM_0x1f20
69e3fd9ea3f50130ffe6b1be9e834e4cab100480
debugedit: debian/gmap/usr/lib/gmap/iit_dump: Unknown DWARF DW_FORM_0x1f21
0c5a64e8ef64207e657b32b3408aecb6d39ee48d
debugedit: debian/gmap/usr/lib/gmap/cpuid: Unknown DWARF DW_FORM_0x1f20
ac0882d8fc7d5a06535d97aa2ac19d809d8b7e75
   dh_makeshlibs -a -O--builddir=build
   dh_shlibdeps -a -O--builddir=build
   dh_installdeb -O--builddir=build
   dh_gencontrol -O--builddir=build
   dh_md5sums -O--builddir=build
   dh_builddeb -O--builddir=build
INFO: pkgstriptranslations version 154
pkgstriptranslations: processing gmap (in debian/gmap); do_strip: , oemstrip: 
pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com
pkgstripfiles: processing control file: debian/gmap/DEBIAN/control, package gmap, directory debian/gmap
pkgstripfiles: Running PNG optimization (using 4 cpus) for package gmap ...
pkgstripfiles: No PNG files.
dpkg-deb: building package 'gmap' in '../gmap_2024-02-22+ds-1build1_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../gmap_2024-02-22+ds-1build1_amd64.buildinfo
 dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lcy02-amd64-104.buildd> -O../gmap_2024-02-22+ds-1build1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-05-09T00:56:24Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


gmap_2024-02-22+ds-1build1_amd64.changes:
-----------------------------------------

Format: 1.8
Date: Sun, 31 Mar 2024 06:01:04 +0000
Source: gmap
Binary: gmap
Built-For-Profiles: noudeb
Architecture: amd64
Version: 2024-02-22+ds-1build1
Distribution: noble
Urgency: medium
Maintainer: Launchpad Build Daemon <buildd@lcy02-amd64-104.buildd>
Changed-By: Steve Langasek <steve.langasek@ubuntu.com>
Description:
 gmap       - spliced and SNP-tolerant alignment for mRNA and short reads
Changes:
 gmap (2024-02-22+ds-1build1) noble; urgency=medium
 .
   * No-change rebuild for CVE-2024-3094
Checksums-Sha1:
 a25217d6ebc02f9077fbe75ca04c3400c2661b8d 6122 gmap_2024-02-22+ds-1build1_amd64.buildinfo
 a82a89e34a40b59d5f4de70b4aea59df672e3c33 21504094 gmap_2024-02-22+ds-1build1_amd64.deb
Checksums-Sha256:
 b3aa74a570976eeffe63ebcf2b092ea0a956e2889e5ae3619f53d9574583f20d 6122 gmap_2024-02-22+ds-1build1_amd64.buildinfo
 ffddacea712d5317c543ec18bcdf589338c859da26b439fa3780266bc16cac5f 21504094 gmap_2024-02-22+ds-1build1_amd64.deb
Files:
 70906518590622993ba31e38b5de1949 6122 science optional gmap_2024-02-22+ds-1build1_amd64.buildinfo
 075b02e2277f3c4f16cfe63c93de5e6a 21504094 science optional gmap_2024-02-22+ds-1build1_amd64.deb
Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
/<<BUILDDIR>>/gmap_2024-02-22+ds-1build1_amd64.changes.new could not be renamed to /<<BUILDDIR>>/gmap_2024-02-22+ds-1build1_amd64.changes: Illegal seek
Distribution field may be wrong!!!
+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: gmap
Binary: gmap
Architecture: amd64
Version: 2024-02-22+ds-1build1
Checksums-Md5:
 075b02e2277f3c4f16cfe63c93de5e6a 21504094 gmap_2024-02-22+ds-1build1_amd64.deb
Checksums-Sha1:
 a82a89e34a40b59d5f4de70b4aea59df672e3c33 21504094 gmap_2024-02-22+ds-1build1_amd64.deb
Checksums-Sha256:
 ffddacea712d5317c543ec18bcdf589338c859da26b439fa3780266bc16cac5f 21504094 gmap_2024-02-22+ds-1build1_amd64.deb
Build-Origin: Ubuntu
Build-Architecture: amd64
Build-Date: Thu, 09 May 2024 00:56:23 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
 usr-local-has-programs
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3ubuntu1),
 autopoint (= 0.21-14ubuntu2),
 autotools-dev (= 20220109.1),
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 bash (= 5.2.21-2ubuntu4),
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 binutils-common (= 2.42-4ubuntu2),
 binutils-x86-64-linux-gnu (= 2.42-4ubuntu2),
 bsdextrautils (= 2.39.3-9ubuntu6),
 bsdutils (= 1:2.39.3-9ubuntu6),
 build-essential (= 12.10ubuntu1),
 bzip2 (= 1.0.8-5.1),
 coreutils (= 9.4-3ubuntu6),
 cpp (= 4:14-20240120-6ubuntu1),
 cpp-13-x86-64-linux-gnu (= 13.2.0-24ubuntu1),
 cpp-14 (= 14-20240429-1ubuntu1),
 cpp-14-x86-64-linux-gnu (= 14-20240429-1ubuntu1),
 cpp-x86-64-linux-gnu (= 4:14-20240120-6ubuntu1),
 dash (= 0.5.12-6ubuntu5),
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 debhelper (= 13.14.1ubuntu5),
 debianutils (= 5.17build1),
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 dh-autoreconf (= 20),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1build1),
 dpkg (= 1.22.6ubuntu6),
 dpkg-dev (= 1.22.6ubuntu6),
 dwz (= 0.15-1build6),
 file (= 1:5.45-3build1),
 findutils (= 4.9.0-5build1),
 g++ (= 4:14-20240120-6ubuntu1),
 g++-14 (= 14-20240429-1ubuntu1),
 g++-14-x86-64-linux-gnu (= 14-20240429-1ubuntu1),
 g++-x86-64-linux-gnu (= 4:14-20240120-6ubuntu1),
 gcc (= 4:14-20240120-6ubuntu1),
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 gcc-13-base (= 13.2.0-24ubuntu1),
 gcc-13-x86-64-linux-gnu (= 13.2.0-24ubuntu1),
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 gcc-14-base (= 14-20240429-1ubuntu1),
 gcc-14-x86-64-linux-gnu (= 14-20240429-1ubuntu1),
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 libatomic1 (= 14-20240429-1ubuntu1),
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 libaudit-common (= 1:3.1.2-2.1build1),
 libaudit1 (= 1:3.1.2-2.1build1),
 libbinutils (= 2.42-4ubuntu2),
 libblkid1 (= 2.39.3-9ubuntu6),
 libbz2-1.0 (= 1.0.8-5.1),
 libbz2-dev (= 1.0.8-5.1),
 libc-bin (= 2.39-0ubuntu8),
 libc-dev-bin (= 2.39-0ubuntu8),
 libc6 (= 2.39-0ubuntu8),
 libc6-dev (= 2.39-0ubuntu8),
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 libctf-nobfd0 (= 2.42-4ubuntu2),
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 libdb5.3t64 (= 5.3.28+dfsg2-7),
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 libgdbm-compat4t64 (= 1.23-5.1build1),
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 libgmp10 (= 2:6.3.0+dfsg-2ubuntu6),
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 libhwasan0 (= 14-20240429-1ubuntu1),
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 liblsan0 (= 14-20240429-1ubuntu1),
 liblz4-1 (= 1.9.4-1build1),
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 libmagic1t64 (= 1:5.45-3build1),
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 libmount1 (= 2.39.3-9ubuntu6),
 libmpc3 (= 1.3.1-1build1),
 libmpfr6 (= 4.2.1-1build1),
 libpam-modules (= 1.5.3-5ubuntu5),
 libpam-modules-bin (= 1.5.3-5ubuntu5),
 libpam-runtime (= 1.5.3-5ubuntu5),
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 libperl5.38t64 (= 5.38.2-3.2build2),
 libpipeline1 (= 1.5.7-2),
 libquadmath0 (= 14-20240429-1ubuntu1),
 libseccomp2 (= 2.5.5-1ubuntu3),
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 libsimde-dev (= 0.7.2-6),
 libsmartcols1 (= 2.39.3-9ubuntu6),
 libssl3t64 (= 3.0.13-0ubuntu3),
 libstdc++-14-dev (= 14-20240429-1ubuntu1),
 libstdc++6 (= 14-20240429-1ubuntu1),
 libsub-override-perl (= 0.10-1),
 libsystemd0 (= 255.4-1ubuntu8),
 libtinfo6 (= 6.4+20240113-1ubuntu2),
 libtool (= 2.4.7-7build1),
 libtsan2 (= 14-20240429-1ubuntu1),
 libubsan1 (= 14-20240429-1ubuntu1),
 libuchardet0 (= 0.0.8-1build1),
 libudev1 (= 255.4-1ubuntu8),
 libunistring5 (= 1.1-2build1),
 libuuid1 (= 2.39.3-9ubuntu6),
 libxml2 (= 2.9.14+dfsg-1.3ubuntu3),
 libzstd1 (= 1.5.5+dfsg2-2build1),
 linux-libc-dev (= 6.8.0-31.31),
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 make (= 4.3-4.1build2),
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 po-debconf (= 1.0.21+nmu1),
 rpcsvc-proto (= 1.4.2-0ubuntu7),
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 zlib1g (= 1:1.3.dfsg-3.1ubuntu2),
 zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2)
Environment:
 DEB_BUILD_OPTIONS="noautodbgsym parallel=4"
 DEB_BUILD_PROFILES="noudeb"
 LANG="C.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1711864864"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


gmap_2024-02-22+ds-1build1_amd64.deb
------------------------------------

 new Debian package, version 2.0.
 size 21504094 bytes: control archive=2623 bytes.
    1003 bytes,    21 lines      control
    4407 bytes,    74 lines      md5sums
 Package: gmap
 Version: 2024-02-22+ds-1build1
 Architecture: amd64
 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
 Installed-Size: 215297
 Depends: perl:any, libbz2-1.0, libc6 (>= 2.34), zlib1g (>= 1:1.2.6)
 Section: science
 Priority: optional
 Homepage: http://research-pub.gene.com/gmap
 Description: spliced and SNP-tolerant alignment for mRNA and short reads
  This package contains the programs GMAP and GSNAP as well as
  utilities to manage genome databases in GMAP/GSNAP format.
  GMAP (Genomic Mapping and Alignment Program) is a tool for aligning
  EST, mRNA and cDNA sequences.
  GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for
  aligning single-end and paired-end transcriptome reads.
  Both tools can use a database of
   * known splice sites and identify novel splice sites.
   * known single-nucleotide polymorphisms (SNPs).
  GSNAP can align bisulfite-treated DNA.
 Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

drwxr-xr-x root/root         0 2024-03-31 06:01 ./
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/bin/
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap -> ../lib/gmap/gmap
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap.avx2 -> ../lib/gmap/gmap.avx2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap.avx512 -> ../lib/gmap/gmap.avx512
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap.nosimd -> ../lib/gmap/gmap.nosimd
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap.sse2 -> ../lib/gmap/gmap.sse2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap.sse41 -> ../lib/gmap/gmap.sse41
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap.sse42 -> ../lib/gmap/gmap.sse42
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap.ssse3 -> ../lib/gmap/gmap.ssse3
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmap_build -> ../lib/gmap/gmap_build
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl -> ../lib/gmap/gmapl
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl.avx2 -> ../lib/gmap/gmapl.avx2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl.avx512 -> ../lib/gmap/gmapl.avx512
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl.nosimd -> ../lib/gmap/gmapl.nosimd
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl.sse2 -> ../lib/gmap/gmapl.sse2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl.sse41 -> ../lib/gmap/gmapl.sse41
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl.sse42 -> ../lib/gmap/gmapl.sse42
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gmapl.ssse3 -> ../lib/gmap/gmapl.ssse3
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap -> ../lib/gmap/gsnap
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap.avx2 -> ../lib/gmap/gsnap.avx2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap.avx512 -> ../lib/gmap/gsnap.avx512
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap.nosimd -> ../lib/gmap/gsnap.nosimd
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap.sse2 -> ../lib/gmap/gsnap.sse2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap.sse41 -> ../lib/gmap/gsnap.sse41
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap.sse42 -> ../lib/gmap/gsnap.sse42
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnap.ssse3 -> ../lib/gmap/gsnap.ssse3
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl -> ../lib/gmap/gsnapl
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl.avx2 -> ../lib/gmap/gsnapl.avx2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl.avx512 -> ../lib/gmap/gsnapl.avx512
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl.nosimd -> ../lib/gmap/gsnapl.nosimd
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl.sse2 -> ../lib/gmap/gsnapl.sse2
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl.sse41 -> ../lib/gmap/gsnapl.sse41
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl.sse42 -> ../lib/gmap/gsnapl.sse42
lrwxrwxrwx root/root         0 2024-03-31 06:01 ./usr/bin/gsnapl.ssse3 -> ../lib/gmap/gsnapl.ssse3
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/lib/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/lib/gmap/
-rwxr-xr-x root/root    690856 2024-03-31 06:01 ./usr/lib/gmap/atoiindex
-rwxr-xr-x root/root    690856 2024-03-31 06:01 ./usr/lib/gmap/cmetindex
-rwxr-xr-x root/root     14640 2024-03-31 06:01 ./usr/lib/gmap/cpuid
-rwxr-xr-x root/root      7863 2024-03-31 06:01 ./usr/lib/gmap/dbsnp_iit
-rwxr-xr-x root/root      1256 2024-03-31 06:01 ./usr/lib/gmap/ensembl_genes
-rwxr-xr-x root/root     21838 2024-03-31 06:01 ./usr/lib/gmap/fa_coords
-rwxr-xr-x root/root   2821608 2024-03-31 06:01 ./usr/lib/gmap/get-genome
-rwxr-xr-x root/root     11936 2024-03-31 06:01 ./usr/lib/gmap/gff3_genes
-rwxr-xr-x root/root     14312 2024-03-31 06:01 ./usr/lib/gmap/gff3_introns
-rwxr-xr-x root/root     15883 2024-03-31 06:01 ./usr/lib/gmap/gff3_splicesites
-rwxr-xr-x root/root     14640 2024-03-31 06:01 ./usr/lib/gmap/gmap
-rwxr-xr-x root/root   8195024 2024-03-31 06:01 ./usr/lib/gmap/gmap.avx2
-rwxr-xr-x root/root   8235984 2024-03-31 06:01 ./usr/lib/gmap/gmap.avx512
-rwxr-xr-x root/root   8350672 2024-03-31 06:01 ./usr/lib/gmap/gmap.nosimd
-rwxr-xr-x root/root   8424400 2024-03-31 06:01 ./usr/lib/gmap/gmap.sse2
-rwxr-xr-x root/root   8166352 2024-03-31 06:01 ./usr/lib/gmap/gmap.sse41
-rwxr-xr-x root/root   8166352 2024-03-31 06:01 ./usr/lib/gmap/gmap.sse42
-rwxr-xr-x root/root   8432592 2024-03-31 06:01 ./usr/lib/gmap/gmap.ssse3
-rwxr-xr-x root/root     27064 2024-03-31 06:01 ./usr/lib/gmap/gmap_build
-rwxr-xr-x root/root      9758 2024-03-31 06:01 ./usr/lib/gmap/gmap_cat
-rwxr-xr-x root/root      7545 2024-03-31 06:01 ./usr/lib/gmap/gmap_process
-rwxr-xr-x root/root   2980248 2024-03-31 06:01 ./usr/lib/gmap/gmapindex
-rwxr-xr-x root/root     14640 2024-03-31 06:01 ./usr/lib/gmap/gmapl
-rwxr-xr-x root/root   8203216 2024-03-31 06:01 ./usr/lib/gmap/gmapl.avx2
-rwxr-xr-x root/root   8244176 2024-03-31 06:01 ./usr/lib/gmap/gmapl.avx512
-rwxr-xr-x root/root   8358864 2024-03-31 06:01 ./usr/lib/gmap/gmapl.nosimd
-rwxr-xr-x root/root   8428496 2024-03-31 06:01 ./usr/lib/gmap/gmapl.sse2
-rwxr-xr-x root/root   8170448 2024-03-31 06:01 ./usr/lib/gmap/gmapl.sse41
-rwxr-xr-x root/root   8174544 2024-03-31 06:01 ./usr/lib/gmap/gmapl.sse42
-rwxr-xr-x root/root   8436688 2024-03-31 06:01 ./usr/lib/gmap/gmapl.ssse3
-rwxr-xr-x root/root     14640 2024-03-31 06:01 ./usr/lib/gmap/gsnap
-rwxr-xr-x root/root   6513640 2024-03-31 06:01 ./usr/lib/gmap/gsnap.avx2
-rwxr-xr-x root/root   6566848 2024-03-31 06:01 ./usr/lib/gmap/gsnap.avx512
-rwxr-xr-x root/root   6669288 2024-03-31 06:01 ./usr/lib/gmap/gsnap.nosimd
-rwxr-xr-x root/root   6779880 2024-03-31 06:01 ./usr/lib/gmap/gsnap.sse2
-rwxr-xr-x root/root   6783976 2024-03-31 06:01 ./usr/lib/gmap/gsnap.sse41
-rwxr-xr-x root/root   6530024 2024-03-31 06:01 ./usr/lib/gmap/gsnap.sse42
-rwxr-xr-x root/root   6779880 2024-03-31 06:01 ./usr/lib/gmap/gsnap.ssse3
-rwxr-xr-x root/root     14640 2024-03-31 06:01 ./usr/lib/gmap/gsnapl
-rwxr-xr-x root/root   6546376 2024-03-31 06:01 ./usr/lib/gmap/gsnapl.avx2
-rwxr-xr-x root/root   6591424 2024-03-31 06:01 ./usr/lib/gmap/gsnapl.avx512
-rwxr-xr-x root/root   6685632 2024-03-31 06:01 ./usr/lib/gmap/gsnapl.nosimd
-rwxr-xr-x root/root   6775744 2024-03-31 06:01 ./usr/lib/gmap/gsnapl.sse2
-rwxr-xr-x root/root   6788040 2024-03-31 06:01 ./usr/lib/gmap/gsnapl.sse41
-rwxr-xr-x root/root   6554560 2024-03-31 06:01 ./usr/lib/gmap/gsnapl.sse42
-rwxr-xr-x root/root   6775744 2024-03-31 06:01 ./usr/lib/gmap/gsnapl.ssse3
-rwxr-xr-x root/root      6406 2024-03-31 06:01 ./usr/lib/gmap/gtf_genes
-rwxr-xr-x root/root     11407 2024-03-31 06:01 ./usr/lib/gmap/gtf_introns
-rwxr-xr-x root/root     12630 2024-03-31 06:01 ./usr/lib/gmap/gtf_splicesites
-rwxr-xr-x root/root     13846 2024-03-31 06:01 ./usr/lib/gmap/gtf_transcript_splicesites
-rwxr-xr-x root/root      1651 2024-03-31 06:01 ./usr/lib/gmap/gvf_iit
-rwxr-xr-x root/root     51808 2024-03-31 06:01 ./usr/lib/gmap/iit_dump
-rwxr-xr-x root/root     76776 2024-03-31 06:01 ./usr/lib/gmap/iit_get
-rwxr-xr-x root/root     64240 2024-03-31 06:01 ./usr/lib/gmap/iit_store
-rwxr-xr-x root/root     96936 2024-03-31 06:01 ./usr/lib/gmap/indexdb_cat
-rwxr-xr-x root/root     29421 2024-03-31 06:01 ./usr/lib/gmap/md_coords
-rwxr-xr-x root/root      1177 2024-03-31 06:01 ./usr/lib/gmap/psl_genes
-rwxr-xr-x root/root      5915 2024-03-31 06:01 ./usr/lib/gmap/psl_introns
-rwxr-xr-x root/root      6985 2024-03-31 06:01 ./usr/lib/gmap/psl_splicesites
-rwxr-xr-x root/root   2878184 2024-03-31 06:01 ./usr/lib/gmap/snpindex
-rwxr-xr-x root/root     92744 2024-03-31 06:01 ./usr/lib/gmap/trindex
-rwxr-xr-x root/root      2275 2024-03-31 06:01 ./usr/lib/gmap/vcf_iit
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/doc/gmap/
-rw-r--r-- root/root      3525 2023-03-24 13:14 ./usr/share/doc/gmap/NOTICE
-rw-r--r-- root/root       171 2023-10-14 18:18 ./usr/share/doc/gmap/README.Debian
-rw-r--r-- root/root     20444 2023-03-24 13:15 ./usr/share/doc/gmap/README.gz
-rw-r--r-- root/root      2460 2024-03-31 06:01 ./usr/share/doc/gmap/changelog.Debian.gz
-rw-r--r-- root/root      4081 2024-02-26 19:56 ./usr/share/doc/gmap/copyright
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/doc/gmap/examples/
-rw-r--r-- root/root    274748 2024-03-31 06:01 ./usr/share/doc/gmap/examples/tests.tar.xz
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/lintian/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       198 2023-12-20 18:03 ./usr/share/lintian/overrides/gmap
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/man/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./usr/share/man/man1/
-rw-r--r-- root/root      6083 2024-03-31 06:01 ./usr/share/man/man1/gmap.1.gz
-rw-r--r-- root/root      2392 2024-03-31 06:01 ./usr/share/man/man1/gmap_build.1.gz
-rw-r--r-- root/root      6089 2024-03-31 06:01 ./usr/share/man/man1/gmapl.1.gz
-rw-r--r-- root/root      6508 2024-03-31 06:01 ./usr/share/man/man1/gsnap.1.gz
-rw-r--r-- root/root      6515 2024-03-31 06:01 ./usr/share/man/man1/gsnapl.1.gz
drwxr-xr-x root/root         0 2024-03-31 06:01 ./var/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./var/cache/
drwxr-xr-x root/root         0 2024-03-31 06:01 ./var/cache/gmap/


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not removing build depends: as requested

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Type: binary
Build-Space: 2988084
Build-Time: 2708
Distribution: noble
Host Architecture: amd64
Install-Time: 4
Job: gmap_2024-02-22+ds-1build1.dsc
Machine Architecture: amd64
Package: gmap
Package-Time: 2713
Source-Version: 2024-02-22+ds-1build1
Space: 2988084
Status: successful
Version: 2024-02-22+ds-1build1
--------------------------------------------------------------------------------
Finished at 2024-05-09T00:56:24Z
Build needed 00:45:13, 2988084k disk space
RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-28314432
Scanning for processes to kill in build PACKAGEBUILD-28314432