https://launchpad.net/ubuntu/+archive/test-rebuild-20221116-xenial-release/+build/24803951 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-044 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 4 Dec 14:55:50 ntpdate[1804]: adjust time server 10.211.37.1 offset -0.000007 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=xenial --arch=armhf PACKAGEBUILD-24803951 --image-type chroot /home/buildd/filecache-default/181062a90b26646e87edd030d787a50801aeed8c Creating target for build PACKAGEBUILD-24803951 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=xenial --arch=armhf PACKAGEBUILD-24803951 Starting target for build PACKAGEBUILD-24803951 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=xenial --arch=armhf PACKAGEBUILD-24803951 'deb http://ftpmaster.internal/ubuntu xenial main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-24803951 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=xenial --arch=armhf PACKAGEBUILD-24803951 Updating target for build PACKAGEBUILD-24803951 Hit:1 http://ftpmaster.internal/ubuntu xenial InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24803951 armhf xenial -c chroot:build-PACKAGEBUILD-24803951 --arch=armhf --dist=xenial --nolog mafft_7.271-1.dsc Initiating build PACKAGEBUILD-24803951 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-044.buildd +==============================================================================+ | mafft 7.271-1 (armhf) Sun, 04 Dec 2022 14:55:55 +0000 | +==============================================================================+ Package: mafft Version: 7.271-1 Source Version: 7.271-1 Distribution: xenial Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24803951/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-EIkuwj/resolver-kD0tgf' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- mafft_7.271-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/mafft-EIkuwj/mafft-7.271' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-EIkuwj' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 9), build-essential, fakeroot Filtered Build-Depends: debhelper (>= 9), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [366 B] Get:5 copy:/<>/apt_archive ./ Packages [446 B] Fetched 1769 B in 0s (149 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican | wordlist whois vacation dh-make gettext-doc autopoint groff less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 13.8 MB of archives. After this operation, 51.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [784 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main armhf groff-base armhf 1.22.3-7 [1023 kB] Get:3 http://ftpmaster.internal/ubuntu xenial/main armhf bsdmainutils armhf 9.0.6ubuntu3 [169 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main armhf libpipeline1 armhf 1.4.1-2 [21.0 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main armhf man-db armhf 2.7.5-1 [836 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main armhf libunistring0 armhf 0.9.3-5.2ubuntu1 [250 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main armhf libmagic1 armhf 1:5.25-2ubuntu1 [211 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main armhf file armhf 1:5.25-2ubuntu1 [20.9 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main armhf libasprintf0v5 armhf 0.19.7-2ubuntu3 [6158 B] Get:10 http://ftpmaster.internal/ubuntu xenial/main armhf gettext-base armhf 0.19.7-2ubuntu3 [44.5 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main armhf libglib2.0-0 armhf 2.48.0-1ubuntu4 [977 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main armhf libicu55 armhf 55.1-7 [7420 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main armhf libxml2 armhf 2.9.3+dfsg1-1 [602 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main armhf autotools-dev all 20150820.1 [39.8 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main armhf libcroco3 armhf 0.6.11-1 [70.0 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main armhf gettext armhf 0.19.7-2ubuntu3 [1013 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main armhf po-debconf all 1.0.19 [234 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main armhf libarchive-zip-perl all 1.56-2 [84.1 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main armhf libfile-stripnondeterminism-perl all 0.015-1 [10.3 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main armhf dh-strip-nondeterminism all 0.015-1 [4864 B] Get:23 http://ftpmaster.internal/ubuntu xenial/main armhf debhelper all 9.20160115ubuntu3 [739 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.8 MB in 5s (2454 kB/s) Selecting previously unselected package groff-base. (Reading database ... 11893 files and directories currently installed.) Preparing to unpack .../groff-base_1.22.3-7_armhf.deb ... Unpacking groff-base (1.22.3-7) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu3_armhf.deb ... Unpacking bsdmainutils (9.0.6ubuntu3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../libpipeline1_1.4.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_armhf.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:armhf. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_armhf.deb ... Unpacking libunistring0:armhf (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_armhf.deb ... Unpacking libmagic1:armhf (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_armhf.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package libasprintf0v5:armhf. Preparing to unpack .../libasprintf0v5_0.19.7-2ubuntu3_armhf.deb ... Unpacking libasprintf0v5:armhf (0.19.7-2ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.7-2ubuntu3_armhf.deb ... Unpacking gettext-base (0.19.7-2ubuntu3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../libglib2.0-0_2.48.0-1ubuntu4_armhf.deb ... Unpacking libglib2.0-0:armhf (2.48.0-1ubuntu4) ... Selecting previously unselected package libicu55:armhf. Preparing to unpack .../libicu55_55.1-7_armhf.deb ... Unpacking libicu55:armhf (55.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../libxml2_2.9.3+dfsg1-1_armhf.deb ... Unpacking libxml2:armhf (2.9.3+dfsg1-1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20150820.1_all.deb ... Unpacking autotools-dev (20150820.1) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../libcroco3_0.6.11-1_armhf.deb ... Unpacking libcroco3:armhf (0.6.11-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.7-2ubuntu3_armhf.deb ... Unpacking gettext (0.19.7-2ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.19_all.deb ... Unpacking po-debconf (1.0.19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.56-2_all.deb ... Unpacking libarchive-zip-perl (1.56-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.015-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.015-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.015-1_all.deb ... Unpacking dh-strip-nondeterminism (0.015-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20160115ubuntu3_all.deb ... Unpacking debhelper (9.20160115ubuntu3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... Setting up groff-base (1.22.3-7) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:armhf (1.4.1-2) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:armhf (0.9.3-5.2ubuntu1) ... Setting up libmagic1:armhf (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up libasprintf0v5:armhf (0.19.7-2ubuntu3) ... Setting up gettext-base (0.19.7-2ubuntu3) ... Setting up libglib2.0-0:armhf (2.48.0-1ubuntu4) ... No schema files found: doing nothing. Setting up libicu55:armhf (55.1-7) ... Setting up libxml2:armhf (2.9.3+dfsg1-1) ... Setting up autotools-dev (20150820.1) ... Setting up libcroco3:armhf (0.6.11-1) ... Setting up gettext (0.19.7-2ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.19) ... Setting up libarchive-zip-perl (1.56-2) ... Setting up libfile-stripnondeterminism-perl (0.015-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up dh-strip-nondeterminism (0.015-1) ... Setting up debhelper (9.20160115ubuntu3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.23-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.26-8ubuntu2 dpkg-dev_1.18.4ubuntu1 g++-5_5.3.1-14ubuntu2 gcc-5_5.3.1-14ubuntu2 libc6-dev_2.23-0ubuntu3 libstdc++-5-dev_5.3.1-14ubuntu2 libstdc++6_5.3.1-14ubuntu2 linux-libc-dev_4.4.0-21.37 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.2.10ubuntu1 apt-transport-https_1.2.10ubuntu1 autotools-dev_20150820.1 base-files_9.4ubuntu4 base-passwd_3.5.39 bash_4.3-14ubuntu1 binutils_2.26-8ubuntu2 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.27.1-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20160104ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:5.3.1-1ubuntu1 cpp-5_5.3.1-14ubuntu2 dash_0.5.8-2.1ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20160115ubuntu3 debianutils_4.7 dh-strip-nondeterminism_0.015-1 diffutils_1:3.3-3 dpkg_1.18.4ubuntu1 dpkg-dev_1.18.4ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.6.0+git+20160126-2 g++_4:5.3.1-1ubuntu1 g++-5_5.3.1-14ubuntu2 gcc_4:5.3.1-1ubuntu1 gcc-5_5.3.1-14ubuntu2 gcc-5-base_5.3.1-14ubuntu2 gcc-6-base_6.0.1-0ubuntu1 gettext_0.19.7-2ubuntu3 gettext-base_0.19.7-2ubuntu3 gnupg_1.4.20-1ubuntu3 gpgv_1.4.20-1ubuntu3 grep_2.24-1 groff-base_1.22.3-7 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.29ubuntu1 init-system-helpers_1.29ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-0ubuntu2 libapt-pkg5.0_1.2.10ubuntu1 libarchive-zip-perl_1.56-2 libasan2_5.3.1-14ubuntu2 libasn1-8-heimdal_1.7~git20150920+dfsg-4ubuntu1 libasprintf0v5_0.19.7-2ubuntu3 libatomic1_5.3.1-14ubuntu2 libattr1_1:2.4.47-2 libaudit-common_1:2.4.5-1ubuntu2 libaudit1_1:2.4.5-1ubuntu2 libblkid1_2.27.1-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.23-0ubuntu3 libc-dev-bin_2.23-0ubuntu3 libc6_2.23-0ubuntu3 libc6-dev_2.23-0ubuntu3 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.3.1-14ubuntu2 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.11-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.47.0-1ubuntu2 libdb5.3_5.3.28-11 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.110-1ubuntu10 libdpkg-perl_1.18.4ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-6ubuntu3 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.015-1 libgcc-5-dev_5.3.1-14ubuntu2 libgcc1_1:6.0.1-0ubuntu1 libgcrypt20_1.6.5-2 libgdbm3_1.8.3-13.1 libglib2.0-0_2.48.0-1ubuntu4 libgmp10_2:6.1.0+dfsg-2 libgnutls30_3.4.10-4ubuntu1 libgomp1_5.3.1-14ubuntu2 libgpg-error0_1.21-2ubuntu1 libgssapi-krb5-2_1.13.2+dfsg-5 libgssapi3-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhcrypto4-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimbase1-heimdal_1.7~git20150920+dfsg-4ubuntu1 libheimntlm0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libhogweed4_3.2-1 libhx509-5-heimdal_1.7~git20150920+dfsg-4ubuntu1 libicu55_55.1-7 libidn11_1.32-3ubuntu1 libisl15_0.16.1-1 libk5crypto3_1.13.2+dfsg-5 libkeyutils1_1.5.9-8ubuntu1 libkmod2_22-1ubuntu4 libkrb5-26-heimdal_1.7~git20150920+dfsg-4ubuntu1 libkrb5-3_1.13.2+dfsg-5 libkrb5support0_1.13.2+dfsg-5 libldap-2.4-2_2.4.42+dfsg-2ubuntu3 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.4-1 libncurses5_6.0+20160213-1ubuntu1 libncursesw5_6.0+20160213-1ubuntu1 libnettle6_3.2-1 libp11-kit0_0.23.2-3 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpcre3_2:8.38-3.1 libperl5.22_5.22.1-9 libpipeline1_1.4.1-2 libpng12-0_1.2.54-1ubuntu1 libprocps4_2:3.3.10-4ubuntu2 libreadline6_6.3-8ubuntu2 libroken18-heimdal_1.7~git20150920+dfsg-4ubuntu1 librtmp1_2.4+20151223.gitfa8646d-1build1 libsasl2-2_2.1.26.dfsg1-14build1 libsasl2-modules-db_2.1.26.dfsg1-14build1 libseccomp2_2.2.3-3ubuntu3 libselinux1_2.4-3build2 libsemanage-common_2.3-1build3 libsemanage1_2.3-1build3 libsepol1_2.4-2 libsmartcols1_2.27.1-6ubuntu3 libsqlite3-0_3.11.0-1ubuntu1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2g-1ubuntu4 libstdc++-5-dev_5.3.1-14ubuntu2 libstdc++6_5.3.1-14ubuntu2 libsystemd0_229-4ubuntu4 libtasn1-6_4.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160213-1ubuntu1 libubsan0_5.3.1-14ubuntu2 libudev1_229-4ubuntu4 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-28 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-6ubuntu3 libwind0-heimdal_1.7~git20150920+dfsg-4ubuntu1 libxml2_2.9.3+dfsg1-1 linux-libc-dev_4.4.0-21.37 lockfile-progs_0.1.17 login_1:4.2-3.1ubuntu5 lsb-base_9.20160110 make_4.1-6 makedev_2.3.1-93ubuntu1 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-6ubuntu3 multiarch-support_2.23-0ubuntu3 ncurses-base_6.0+20160213-1ubuntu1 ncurses-bin_6.0+20160213-1ubuntu1 openssl_1.0.2g-1ubuntu4 optipng_0.7.6-1 passwd_1:4.2-3.1ubuntu5 patch_2.7.5-1 perl_5.22.1-9 perl-base_5.22.1-9 perl-modules-5.22_5.22.1-9 pkg-create-dbgsym_0.72 pkgbinarymangler_129 po-debconf_1.0.19 policyrcd-script-zg2_0.1-2 procps_2:3.3.10-4ubuntu2 readline-common_6.3-8ubuntu2 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.2.2-7 sensible-utils_0.0.9 systemd_229-4ubuntu4 systemd-sysv_229-4ubuntu4 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.3ubuntu2 tar_1.28-2.1 tzdata_2016d-0ubuntu0.16.04 ubuntu-keyring_2012.05.19 util-linux_2.27.1-6ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mafft Binary: mafft Architecture: any Version: 7.271-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://mafft.cbrc.jp/alignment/software/ Standards-Version: 3.9.6 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/mafft/trunk/ Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/mafft/trunk/ Testsuite: autopkgtest Build-Depends: debhelper (>= 9) Package-List: mafft deb science optional arch=any Checksums-Sha1: f5d3ceff6fb97f7a2101793ce596e852c57433a2 435775 mafft_7.271.orig.tar.gz e4982ad94eb2114b1d32fdcd7e58b8a4ca9652ac 6596 mafft_7.271-1.debian.tar.xz Checksums-Sha256: f7a9149b5959e582de28707cc027882786d1cc445e6fde4d1683660ba23e89f2 435775 mafft_7.271.orig.tar.gz 083aeb6f7bbc2117b251edb958709c7054d2ba52062fb50aff87a5e2d70163bf 6596 mafft_7.271-1.debian.tar.xz Files: 1583142383059d82b1e97df5a60439b2 435775 mafft_7.271.orig.tar.gz d450b734ac1939cecdd63c28dea4c712 6596 mafft_7.271-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJWqRCpAAoJEFeKBJTRxkbR4yoP+gISbgeDnE/nGET6Ib9dbcNH sdl/lzyTXhel2sEsO5xbDfJ+3dCNjFqPK9bONJKgV0a5aNQFDtRZAul/5YV8E1Ux 6JawE39pTQrJLFIhQJCwtSoVKjaV1A+hqPOB/Gkcc4zW0QgbxI3K7p1RnLzXvDh9 poidHK9RKuUm1qx325o1bWYq9o5hIRcn5Y6O12N9QtFnQ66WjW0dEQPzKybyI3Si tIGhzFLUals88n5K12Ov2y1/zhzqf2MqUHh1R0EDdDv4i/GjkXsfLSngr9b3azKg ITlK+dpF8QRF6/5lqMjyDay8hw595/9Ly7Okd1hE10j2pnETbJs2o8pO3EdrOejG m3+ZgMz18tWvrUw+nb8xjgSg+/VyPq1muXpf8k7au/E5KWEjnTuO/fLrY7kGCnO0 Fwk2Y0dF4iwEICb6dw1fA+wrDEHNFS3tmDcW2SM4Q5ax4GTTcIfIIwNTIvka2I4n OwkuEuLZFrWJdDmj/48b6GrUH1IiOMzdo6uUl3MZjNIZTbEGwTnq89Ww4CldtwwS xTN7Od1LQEsvVOROv3to9paTVgZZznsPqdmvplsWGe9aAYhXkKZkqD/1hQKqumxh iqtdktdK2MjPZMXZ4DQyPqkn3r/5UbNk3kvpSv4VLllOEvtdaCkRrFRnObeapKp3 mrxc1OuCmkwuuZsgxYCY =oXFl -----END PGP SIGNATURE----- gpgv: Signature made Wed Jan 27 18:47:05 2016 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./mafft_7.271-1.dsc dpkg-source: info: extracting mafft in /<> dpkg-source: info: unpacking mafft_7.271.orig.tar.gz dpkg-source: info: unpacking mafft_7.271-1.debian.tar.xz dpkg-source: info: applying fix_bashism.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24803951 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24803951 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24803951 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: source package mafft dpkg-buildpackage: source version 7.271-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build mafft-7.271 dpkg-buildpackage: host architecture armhf fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' [ ! -f core/Makefile ] || /usr/bin/make -C core clean make[2]: Entering directory '/<>/core' rm -f *.o *.a *.exe *~ mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign pair2hat3s multi2hat3s pairash addsingle splittbfast disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version mafft mafft-homologs.rb libdisttbfast.so libdisttbfast.dylib libdisttbfast.dll *.gcda *.gcno make[2]: Leaving directory '/<>/core' rm -rf binaries/* scripts/* dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make -C core \ PREFIX=/usr/lib/mafft \ ENABLE_MULTITHREAD=-Denablemultithread \ LIBDIR=/usr/lib/mafft/lib/mafft \ CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" make[2]: Entering directory '/<>/core' cp mafftash_premafft.tmpl mafftash_premafft.pl cp seekquencer_premafft.tmpl seekquencer_premafft.pl gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mtxutl.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c io.c: In function ‘PreRead’: io.c:1037:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); *locnjob = atoi( b ); ^ io.c:1042:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:1046:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); nleni = atoi( b ); ^ io.c: In function ‘FRead’: io.c:1082:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:1172:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); nlen[i] = atoi( b ); /* seq i no nagasa */ ^ io.c: In function ‘readhat2_doublehalf_part_pointer’: io.c:2498:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c:2499:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ^ io.c:2504:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c: In function ‘readhat2_doublehalf_pointer’: io.c:2534:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c:2535:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ^ io.c:2540:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c: In function ‘readhat2_doublehalf’: io.c:2568:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c:2569:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^ io.c:2570:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c: In function ‘readhat2_double’: io.c:2598:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c:2599:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^ io.c:2600:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c: In function ‘readhat2_int’: io.c:2628:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c:2629:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^ io.c:2630:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c: In function ‘readhat2_pointer’: io.c:2659:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c:2660:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^ io.c:2661:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c: In function ‘readhat2’: io.c:2689:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c:2690:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^ io.c:2691:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^ io.c: In function ‘ReadFasta_sub’: io.c:2891:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:2906:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadSsearch’: io.c:2925:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadBlastm7_avscore’: io.c:3053:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3060:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3061:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadBlastm7_scoreonly’: io.c:3176:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3183:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3184:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadBlastm7’: io.c:3294:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3301:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3302:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta34noalign’: io.c:3326:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta34m10_nuc’: io.c:3363:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3389:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta34m10’: io.c:3502:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3526:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta34m10_scoreonly_nucbk’: io.c:3629:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta34m10_scoreonly_nuc’: io.c:3679:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta34m10_scoreonly’: io.c:3740:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta34’: io.c:3796:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c:3822:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); // initn: ^ io.c:3825:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); // Smith-Waterman score ^ io.c:3837:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta3’: io.c:3859:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadFasta’: io.c:3884:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadOpt’: io.c:3921:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘ReadOpt2’: io.c:3942:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘readOtherOptions’: io.c:4038:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^ io.c: In function ‘loadaamtx’: io.c:4870:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( inorder, 999, mf ); ^ io.c:4902:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, mf ); ^ io.c:4924:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, mf ); ^ io.c: In function ‘readsubalignmentstable’: io.c:5070:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, linelen-1, fp ); ^ io.c:5091:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, linelen-1, fp ); ^ io.c: In function ‘readmccaskill’: io.c:5145:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ io.c:5155:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ io.c: In function ‘readpairfoldalign’: io.c:5214:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ io.c:5227:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ io.c:5234:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ io.c:5248:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ io.c:5254:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mltaln9.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tddis.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c constants.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nj.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c partSalignmm.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalignmm.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rna.c rna.c: In function ‘rnaalifoldcall’: rna.c:225:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( cmd ); ^ rna.c:245:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ rna.c:285:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( cmd ); ^ gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Salignmm.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Dalignmm.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign_localhom.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Galign11.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalignmm.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fftFunctions.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tditeration.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dvtditr.c dvtditr.c: In function ‘main’: dvtditr.c:911:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( "cp infile.tree GuideTree" ); // tekitou ^ gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c defs.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SAalignmm.c -o SAalignmm.o gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c treeOperation.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addfunctions.c gcc -o dvtditr mtxutl.o io.o mltaln9.o tddis.o constants.o nj.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o MSalignmm.o fftFunctions.o fft.o tditeration.o dvtditr.o defs.o SAalignmm.o treeOperation.o addfunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndfast7.c dndfast7.c: In function ‘main’: dndfast7.c:328:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ gcc -o dndfast7 dndfast7.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndblast.c dndblast.c: In function ‘main’: dndblast.c:203:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ dndblast.c:384:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ gcc -o dndblast dndblast.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sextet5.c gcc -o sextet5 io.o constants.o mtxutl.o mltaln9.o tddis.o sextet5.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-distance.c gcc -o mafft-distance io.o constants.o mtxutl.o mltaln9.o tddis.o mafft-distance.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalign11.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c suboptalign11.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c genalign11.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalign11.c gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalign.c pairlocalalign.c: In function ‘calllast_once’: pairlocalalign.c:1055:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( command ); ^ pairlocalalign.c:1091:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( command ); ^ pairlocalalign.c: In function ‘readlastresx’: pairlocalalign.c:607:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 9999, fp ); ^ pairlocalalign.c: In function ‘calllast_fast’: pairlocalalign.c:980:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( command ); ^ pairlocalalign.c: In function ‘lastcallthread’: pairlocalalign.c:871:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( command ); ^ pairlocalalign.c: In function ‘readlastresx_singleq’: pairlocalalign.c:373:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 9999, fp ); ^ pairlocalalign.c: In function ‘readhat4’: pairlocalalign.c:1531:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( oneline, 999, fp ); ^ pairlocalalign.c:1543:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( oneline, 999, fp ); ^ pairlocalalign.c: In function ‘recalllara’: pairlocalalign.c:1244:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^ pairlocalalign.c: In function ‘callmxscarna_giving_bpp’: pairlocalalign.c:1407:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ pairlocalalign.c:1409:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ pairlocalalign.c:1429:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^ pairlocalalign.c:1450:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^ pairlocalalign.c:1464:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^ pairlocalalign.c:1484:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^ pairlocalalign.c:1486:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^ pairlocalalign.c: In function ‘calldafs_giving_bpp’: pairlocalalign.c:1290:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ pairlocalalign.c:1292:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ pairlocalalign.c:1312:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^ pairlocalalign.c:1333:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^ pairlocalalign.c:1343:2: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^ pairlocalalign.c:1363:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^ pairlocalalign.c:1365:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^ pairlocalalign.c:1367:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^ gcc -o pairlocalalign mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o MSalign11.o suboptalign11.o genalign11.o Lalign11.o SAalignmm.o pairlocalalign.o defs.o fft.o fftFunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pair2hat3s.c gcc -o pair2hat3s mtxutl.o io.o mltaln9.o tddis.o constants.o pair2hat3s.o defs.o fft.o fftFunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c multi2hat3s.c gcc -o multi2hat3s mtxutl.o io.o mltaln9.o tddis.o constants.o multi2hat3s.o defs.o fft.o fftFunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairash.c pairash.c: In function ‘prepareash’: pairash.c:639:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c:681:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c: In function ‘callrash’: pairash.c:485:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ pairash.c: In function ‘readrash’: pairash.c:277:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c:284:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c:289:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c:294:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c: In function ‘preparetmalign’: pairash.c:530:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c:576:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c:587:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( command ); ^ pairash.c: In function ‘checkcbeta’: pairash.c:321:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( linec, 999, fp ); ^ pairash.c: In function ‘calltmalign’: pairash.c:347:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ pairash.c:356:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( com, 100, fp ); ^ pairash.c: In function ‘readtmalign’: pairash.c:228:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^ pairash.c:232:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, nlenmax*2, fp ); ^ pairash.c:235:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, nlenmax*2, fp ); ^ pairash.c:238:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, nlenmax*2, fp ); ^ gcc -o pairash mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o MSalign11.o suboptalign11.o genalign11.o Lalign11.o SAalignmm.o pairash.o defs.o fft.o fftFunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addsingle.c addsingle.c: In function ‘addsinglethread’: addsingle.c:1919:17: warning: implicit declaration of function ‘deletenewinsertions_whole_eq’ [-Wimplicit-function-declaration] ndeleted += deletenewinsertions_whole_eq( norg, 1, bseq, bseq+norg, deletelist+iadd ); ^ gcc -o addsingle mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o SAalignmm.o addsingle.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splittbfast.c splittbfast.c: In function ‘main’: splittbfast.c:3215:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ gcc -o splittbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o SAalignmm.o MSalignmm.o Lalign11.o splittbfast.o defs.o fft.o fftFunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c disttbfast.c disttbfast.c: In function ‘disttbfast’: disttbfast.c:2593:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( "cp infile.tree GuideTree" ); // tekitou ^ gcc -o disttbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o SAalignmm.o MSalignmm.o disttbfast.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tbfast.c tbfast.c: In function ‘main’: tbfast.c:2053:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( "cp infile.tree GuideTree" ); // tekitou ^ gcc -o tbfast mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o SAalignmm.o tbfast.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-profile.c gcc -o mafft-profile io.o mtxutl.o mltaln9.o tddis.o constants.o partSalignmm.o MSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o SAalignmm.o Galign11.o Falign.o Falign_localhom.o fftFunctions.o fft.o mafft-profile.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c f2cl.c f2cl.c: In function ‘main’: f2cl.c:283:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, B-1, orderfp ); ^ gcc -o f2cl mtxutl.o io.o f2cl.o constants.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mccaskillwrap.c mccaskillwrap.c: In function ‘main’: mccaskillwrap.c:369:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( "tr -d '\\r' < _mccaskillinorg > _mccaskillin" ); // for cygwin, wakaran ^ mccaskillwrap.c: In function ‘athread’: mccaskillwrap.c:115:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ mccaskillwrap.c:117:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ mccaskillwrap.c:128:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^ mccaskillwrap.c:152:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system( com ); ^ mccaskillwrap.c: In function ‘readrawmccaskill’: mccaskillwrap.c:46:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^ gcc -o mccaskillwrap mtxutl.o io.o mccaskillwrap.o constants.o defs.o mltaln9.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c contrafoldwrap.c contrafoldwrap.c: In function ‘readcontrafold’: contrafoldwrap.c:57:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 9999, fp ); ^ gcc -o contrafoldwrap mtxutl.o io.o contrafoldwrap.o constants.o defs.o mltaln9.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c countlen.c gcc -o countlen mtxutl.o io.o countlen.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq2regtable.c gcc -o seq2regtable mtxutl.o io.o seq2regtable.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c regtable2seq.c regtable2seq.c: In function ‘readereg’: regtable2seq.c:69:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, regfp ); ^ regtable2seq.c:93:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, regfp ); ^ regtable2seq.c: In function ‘readreg’: regtable2seq.c:116:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, regfp ); ^ gcc -o regtable2seq mtxutl.o io.o regtable2seq.o defs.o mltaln9.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c score.c gcc -o score io.o mtxutl.o mltaln9.o score.o constants.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getlag.c gcc -o getlag mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Falign.o Falign_localhom.o Galign11.o SAalignmm.o MSalignmm.o Dalignmm.o getlag.o defs.o fft.o fftFunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndpre.c gcc -o dndpre dndpre.o io.o constants.o mtxutl.o mltaln9.o defs.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setcore.c gcc -o setcore mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o SAalignmm.o MSalignmm.o setcore.o defs.o fft.o fftFunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceu.c gcc -o replaceu mtxutl.o io.o replaceu.o defs.o mltaln9.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c restoreu.c restoreu.c: In function ‘main’: restoreu.c:177:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, dlfp ); ^ gcc -o restoreu mtxutl.o io.o restoreu.o defs.o mltaln9.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setdirection.c setdirection.c: In function ‘main’: setdirection.c:132:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( line, 99, difp ); ^ gcc -o setdirection mtxutl.o io.o setdirection.o defs.o mltaln9.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c makedirectionlist.c gcc -o makedirectionlist mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o SAalignmm.o MSalignmm.o Lalign11.o makedirectionlist.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread gcc -o version version.c -Denablemultithread -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro sed "s:_LIBDIR:/usr/lib/mafft/lib/mafft:" mafft.tmpl > mafft sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-homologs.tmpl > mafft-homologs.rb cp mafft mafft-homologs.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign pair2hat3s multi2hat3s pairash addsingle splittbfast disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. make[2]: Leaving directory '/<>/core' make[1]: Leaving directory '/<>' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' /usr/bin/make -C core PREFIX=/<>/debian/mafft/usr/lib/mafft MANDIR=/<>/debian/mafft/usr/share/man/man1 LIBDIR=/<>/debian/mafft/usr/lib/mafft/lib/mafft install make[2]: Entering directory '/<>/core' cp mafft mafft-homologs.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign pair2hat3s multi2hat3s pairash addsingle splittbfast disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. mkdir -p /<>/debian/mafft/usr/lib/mafft/lib/mafft chmod 755 /<>/debian/mafft/usr/lib/mafft/lib/mafft mkdir -p /<>/debian/mafft/usr/lib/mafft/bin chmod 755 /<>/debian/mafft/usr/lib/mafft/bin chmod 755 mafft mafft-homologs.rb install mafft mafft-homologs.rb /<>/debian/mafft/usr/lib/mafft/bin chmod 755 dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign pair2hat3s multi2hat3s pairash addsingle splittbfast disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version ||: # in MinGW, it's ok if this fails install -s dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign pair2hat3s multi2hat3s pairash addsingle splittbfast disttbfast tbfast mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version /<>/debian/mafft/usr/lib/mafft/lib/mafft install mafftash_premafft.pl seekquencer_premafft.pl /<>/debian/mafft/usr/lib/mafft/lib/mafft install -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/lib/mafft/lib/mafft ( cd /<>/debian/mafft/usr/lib/mafft/bin; \ rm -f linsi ginsi einsi fftns fftnsi nwns nwnsi xinsi qinsi; \ rm -f mafft-linsi mafft-ginsi mafft-einsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-xinsi mafft-qinsi mafft-randomcore.rb ; \ ln -s mafft linsi; ln -s mafft ginsi; ln -s mafft fftns; \ ln -s mafft fftnsi; ln -s mafft nwns; ln -s mafft nwnsi; \ ln -s mafft einsi; \ ln -s mafft mafft-linsi; ln -s mafft mafft-ginsi; ln -s mafft mafft-fftns; \ ln -s mafft mafft-fftnsi; ln -s mafft mafft-nwns; ln -s mafft mafft-nwnsi; \ ln -s mafft mafft-einsi; ln -s mafft mafft-xinsi; ln -s mafft mafft-qinsi;\ rm -f mafft-profile mafft-profile.exe; ln -s /<>/debian/mafft/usr/lib/mafft/lib/mafft/mafft-profile .; \ rm -f mafft-distance mafft-distance.exe; ln -s /<>/debian/mafft/usr/lib/mafft/lib/mafft/mafft-distance . ) mkdir -p /<>/debian/mafft/usr/share/man/man1 chmod 755 /<>/debian/mafft/usr/share/man/man1 install -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/share/man/man1 make[2]: Leaving directory '/<>/core' rm debian/mafft/usr/lib/mafft/lib/mafft/*.1 # Remove zero-sized file but if it's not zero-sized that's an error. # If the file doesn't exist that's OK. ! cd debian/mafft/usr/lib/mafft/bin/ || \ ! test -s mafft-sparsecore.rb && \ rm -f mafft-sparsecore.rb make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -X test/sample make[1]: Leaving directory '/<>' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: mafft dh_strip debug symbol extraction: packages to act on: mafft dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 mafft has no unstripped objects, ignoring find: ‘/<>/debian/mafft-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/debian/mafft-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mafft/usr/lib/mafft/lib/mafft/dndblast debian/mafft/usr/lib/mafft/lib/mafft/score debian/mafft/usr/lib/mafft/lib/mafft/regtable2seq debian/mafft/usr/lib/mafft/lib/mafft/pairash debian/mafft/usr/lib/mafft/lib/mafft/setdirection debian/mafft/usr/lib/mafft/lib/mafft/dndpre debian/mafft/usr/lib/mafft/lib/mafft/replaceu debian/mafft/usr/lib/mafft/lib/mafft/dvtditr debian/mafft/usr/lib/mafft/lib/mafft/splittbfast debian/mafft/usr/lib/mafft/lib/mafft/contrafoldwrap debian/mafft/usr/lib/mafft/lib/mafft/pairlocalalign debian/mafft/usr/lib/mafft/lib/mafft/pair2hat3s debian/mafft/usr/lib/mafft/lib/mafft/restoreu debian/mafft/usr/lib/mafft/lib/mafft/mafft-distance debian/mafft/usr/lib/mafft/lib/mafft/mccaskillwrap debian/mafft/usr/lib/mafft/lib/mafft/f2cl debian/mafft/usr/lib/mafft/lib/mafft/mafft-profile debian/mafft/usr/lib/mafft/lib/mafft/makedirectionlist debian/mafft/usr/lib/mafft/lib/mafft/tbfast debian/mafft/usr/lib/mafft/lib/mafft/setcore debian/mafft/usr/lib/mafft/lib/mafft/seq2regtable debian/mafft/usr/lib/mafft/lib/mafft/sextet5 debian/mafft/usr/lib/mafft/lib/mafft/dndfast7 debian/mafft/usr/lib/mafft/lib/mafft/countlen debian/mafft/usr/lib/mafft/lib/mafft/getlag debian/mafft/usr/lib/mafft/lib/mafft/disttbfast debian/mafft/usr/lib/mafft/lib/mafft/multi2hat3s debian/mafft/usr/lib/mafft/lib/mafft/addsingle were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform armhf: mafft dh_gencontrol debug symbol wrapper: packages to act on: mafft dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: no debian/mafft-dbgsym, skipping package mafft dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 129 pkgstriptranslations: processing mafft (in debian/mafft); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/mafft/DEBIAN/control, package mafft, directory debian/mafft pkgstripfiles: Truncating usr/share/doc/mafft/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package mafft ... pkgstripfiles: No PNG files. dpkg-deb: building package 'mafft' in '../mafft_7.271-1_armhf.deb'. dpkg-genchanges -B -mLaunchpad Build Daemon >../mafft_7.271-1_armhf.changes dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build mafft-7.271 dpkg-buildpackage: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-04T14:56:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mafft_7.271-1_armhf.changes: ---------------------------- Format: 1.8 Date: Wed, 27 Jan 2016 19:44:13 +0100 Source: mafft Binary: mafft Architecture: armhf Version: 7.271-1 Distribution: xenial Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.271-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 3b37dda29c2a27194c019bc86f9249954f45306b 586544 mafft_7.271-1_armhf.deb Checksums-Sha256: 2af92e101c38f602668c5de70aeeb05182b83862edcb028d3f1c92691c414e5c 586544 mafft_7.271-1_armhf.deb Files: d0cc9488bd7624baa47afe269246e2f3 586544 science optional mafft_7.271-1_armhf.deb /<>/mafft_7.271-1_armhf.changes.new could not be renamed to /<>/mafft_7.271-1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mafft_7.271-1_armhf.deb ----------------------- new debian package, version 2.0. size 586544 bytes: control archive=2336 bytes. 1459 bytes, 31 lines control 3569 bytes, 51 lines md5sums Package: mafft Version: 7.271-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5662 Depends: libc6 (>= 2.7), perl Recommends: blast2, libwww-perl, lynx, ruby Enhances: t-coffee Section: science Priority: optional Homepage: http://mafft.cbrc.jp/alignment/software/ Description: Multiple alignment program for amino acid or nucleotide sequences MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm). drwxr-xr-x root/root 0 2022-12-04 14:56 ./ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/bin/ lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/bin/mafft -> ../lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/bin/mafft-homologs -> ../lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/bin/mafft-profile -> ../lib/mafft/bin/mafft-profile drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/lib/mafft/ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/ lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/einsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/fftns -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/fftnsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/ginsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/linsi -> mafft -rwxr-xr-x root/root 88920 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-distance -> ../lib/mafft/mafft-distance lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-einsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-fftns -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-fftnsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-ginsi -> mafft -rwxr-xr-x root/root 8861 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-linsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-nwns -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-nwnsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-profile -> ../lib/mafft/mafft-profile lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-qinsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/mafft-xinsi -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/nwns -> mafft lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/lib/mafft/bin/nwnsi -> mafft drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/lib/mafft/lib/ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/ -rwxr-xr-x root/root 296572 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/addsingle -rwxr-xr-x root/root 144972 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/contrafoldwrap -rwxr-xr-x root/root 50900 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/countlen -rwxr-xr-x root/root 296588 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/disttbfast -rwxr-xr-x root/root 153172 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/dndblast -rwxr-xr-x root/root 153172 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/dndfast7 -rwxr-xr-x root/root 149100 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/dndpre -rwxr-xr-x root/root 308884 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/dvtditr -rwxr-xr-x root/root 95796 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/f2cl -rwxr-xr-x root/root 267868 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/getlag -rwxr-xr-x root/root 153164 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/mafft-distance -rwxr-xr-x root/root 267868 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/mafft-profile -rwxr-xr-x root/root 10475 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/mafftash_premafft.pl -rwxr-xr-x root/root 284276 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/makedirectionlist -rwxr-xr-x root/root 149100 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/mccaskillwrap -rwxr-xr-x root/root 161364 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/multi2hat3s -rwxr-xr-x root/root 161364 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/pair2hat3s -rwxr-xr-x root/root 284268 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/pairash -rwxr-xr-x root/root 300668 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/pairlocalalign -rwxr-xr-x root/root 100068 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/regtable2seq -rwxr-xr-x root/root 100076 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/replaceu -rwxr-xr-x root/root 100068 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/restoreu -rwxr-xr-x root/root 144972 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/score -rwxr-xr-x root/root 15541 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/seekquencer_premafft.pl -rwxr-xr-x root/root 50900 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/seq2regtable -rwxr-xr-x root/root 267868 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/setcore -rwxr-xr-x root/root 100076 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/setdirection -rwxr-xr-x root/root 153164 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/sextet5 -rwxr-xr-x root/root 292460 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/splittbfast -rwxr-xr-x root/root 296580 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/tbfast -rwxr-xr-x root/root 5508 2022-12-04 14:56 ./usr/lib/mafft/lib/mafft/version drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/share/ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/share/doc/mafft/ -rw-r--r-- root/root 543 2022-12-04 14:56 ./usr/share/doc/mafft/changelog.Debian.gz -rw-r--r-- root/root 1963 2014-10-07 13:31 ./usr/share/doc/mafft/copyright drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/share/doc/mafft/test/ -rw-r--r-- root/root 16616 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample -rw-r--r-- root/root 29392 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.dpparttree -rw-r--r-- root/root 29176 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.fftns2 -rw-r--r-- root/root 29068 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.fftnsi -rw-r--r-- root/root 29896 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.gins1 -rw-r--r-- root/root 29320 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.ginsi -rw-r--r-- root/root 42640 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.ginsi.allowshift -rw-r--r-- root/root 28888 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.lins1 -rw-r--r-- root/root 29824 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.linsi -rw-r--r-- root/root 29932 2016-01-06 08:23 ./usr/share/doc/mafft/test/sample.parttree -rw-r--r-- root/root 1502 2016-01-06 08:23 ./usr/share/doc/mafft/test/samplerna -rw-r--r-- root/root 1916 2016-01-06 08:23 ./usr/share/doc/mafft/test/samplerna.qinsi -rw-r--r-- root/root 1916 2016-01-06 08:23 ./usr/share/doc/mafft/test/samplerna.xinsi -rw-r--r-- root/root 725 2016-01-06 08:23 ./usr/share/doc/mafft/test/script drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/share/man/ drwxr-xr-x root/root 0 2022-12-04 14:56 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/ginsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/mafft-einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/mafft-fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/mafft-fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/mafft-ginsi.1.gz -> mafft.1.gz -rw-r--r-- root/root 2130 2022-12-04 14:56 ./usr/share/man/man1/mafft-homologs.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/mafft-linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-12-04 14:56 ./usr/share/man/man1/mafft-profile.1.gz -> mafft.1.gz -rw-r--r-- root/root 4421 2022-12-04 14:56 ./usr/share/man/man1/mafft.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 55736 Build-Time: 38 Distribution: xenial Host Architecture: armhf Install-Time: 10 Job: mafft_7.271-1.dsc Machine Architecture: arm64 Package: mafft Package-Time: 50 Source-Version: 7.271-1 Space: 55736 Status: successful Version: 7.271-1 -------------------------------------------------------------------------------- Finished at 2022-12-04T14:56:45Z Build needed 00:00:50, 55736k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=xenial --arch=armhf PACKAGEBUILD-24803951 Scanning for processes to kill in build PACKAGEBUILD-24803951