https://launchpad.net/ubuntu/+archive/test-rebuild-20220914-kinetic/+build/24443626 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-024 5.4.0-125-generic #141-Ubuntu SMP Wed Aug 10 14:03:41 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_221~588~ubuntu20.04.1 python3-lpbuildd_221~588~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 19 Sep 04:41:27 ntpdate[1821]: adjust time server 10.211.37.1 offset 0.007540 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24443626 --image-type chroot /home/buildd/filecache-default/bee0bc12d37b7f8f5575cac6dd1465e088af1717 Creating target for build PACKAGEBUILD-24443626 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24443626 Starting target for build PACKAGEBUILD-24443626 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24443626 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24443626 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24443626 Adding trusted keys to build-PACKAGEBUILD-24443626 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24443626 Updating target for build PACKAGEBUILD-24443626 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic/main armhf Packages [3752 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic/main Translation-en [2684 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf Packages [1333 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe armhf Packages [13.8 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5793 kB] Fetched 21.8 MB in 3s (6319 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libubsan1 libudev1 linux-libc-dev lto-disabled-list systemd systemd-sysv usrmerge 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 47.7 MB of archives. After this operation, 385 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main armhf bash armhf 5.2~rc2-2ubuntu1 [676 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main armhf systemd-sysv armhf 251.4-1ubuntu4 [11.2 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main armhf systemd armhf 251.4-1ubuntu4 [2785 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main armhf libsystemd-shared armhf 251.4-1ubuntu4 [1608 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf libsystemd0 armhf 251.4-1ubuntu4 [305 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main armhf libcc1-0 armhf 12.2.0-2ubuntu1 [38.8 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libgomp1 armhf 12.2.0-2ubuntu1 [109 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main armhf libatomic1 armhf 12.2.0-2ubuntu1 [7666 B] Get:9 http://ftpmaster.internal/ubuntu kinetic/main armhf libasan8 armhf 12.2.0-2ubuntu1 [2382 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main armhf libubsan1 armhf 12.2.0-2ubuntu1 [950 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-12-base armhf 12.2.0-2ubuntu1 [19.2 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main armhf libstdc++6 armhf 12.2.0-2ubuntu1 [603 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main armhf g++-12 armhf 12.2.0-2ubuntu1 [9309 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main armhf libstdc++-12-dev armhf 12.2.0-2ubuntu1 [2238 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcc-12-dev armhf 12.2.0-2ubuntu1 [857 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main armhf gcc-12 armhf 12.2.0-2ubuntu1 [16.2 MB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main armhf cpp-12 armhf 12.2.0-2ubuntu1 [8151 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main armhf libgcc-s1 armhf 12.2.0-2ubuntu1 [41.1 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main armhf libudev1 armhf 251.4-1ubuntu4 [72.5 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main armhf usrmerge all 29ubuntu2 [55.8 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main armhf linux-libc-dev armhf 5.19.0-15.15 [1256 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main armhf lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.7 MB in 2s (20.2 MB/s) (Reading database ... 13303 files and directories currently installed.) Preparing to unpack .../bash_5.2~rc2-2ubuntu1_armhf.deb ... Unpacking bash (5.2~rc2-2ubuntu1) over (5.1-6ubuntu1) ... Setting up bash (5.2~rc2-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13304 files and directories currently installed.) Preparing to unpack .../systemd-sysv_251.4-1ubuntu4_armhf.deb ... Unpacking systemd-sysv (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Preparing to unpack .../systemd_251.4-1ubuntu4_armhf.deb ... Unpacking systemd (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Preparing to unpack .../libsystemd-shared_251.4-1ubuntu4_armhf.deb ... Unpacking libsystemd-shared:armhf (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Preparing to unpack .../libsystemd0_251.4-1ubuntu4_armhf.deb ... Unpacking libsystemd0:armhf (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Setting up libsystemd0:armhf (251.4-1ubuntu4) ... (Reading database ... 13304 files and directories currently installed.) Preparing to unpack .../0-libcc1-0_12.2.0-2ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../1-libgomp1_12.2.0-2ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../2-libatomic1_12.2.0-2ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../3-libasan8_12.2.0-2ubuntu1_armhf.deb ... Unpacking libasan8:armhf (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../4-libubsan1_12.2.0-2ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../5-gcc-12-base_12.2.0-2ubuntu1_armhf.deb ... Unpacking gcc-12-base:armhf (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Setting up gcc-12-base:armhf (12.2.0-2ubuntu1) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24443626 armhf kinetic -c chroot:build-PACKAGEBUILD-24443626 --arch=armhf --dist=kinetic --nolog r-bioc-fmcsr_1.38.0+dfsg-1.dsc Initiating build PACKAGEBUILD-24443626 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-125-generic #141-Ubuntu SMP Wed Aug 10 14:03:41 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-024.buildd +==============================================================================+ | r-bioc-fmcsr 1.38.0+dfsg-1 (armhf) Mon, 19 Sep 2022 04:41:53 +0000 | +==============================================================================+ Package: r-bioc-fmcsr Version: 1.38.0+dfsg-1 Source Version: 1.38.0+dfsg-1 Distribution: kinetic Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24443626/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-PCDJp3/resolver-GQb1GO' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-fmcsr_1.38.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-PCDJp3/r-bioc-fmcsr-1.38.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-fmcsr-PCDJp3' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [407 B] Get:5 copy:/<>/apt_archive ./ Packages [491 B] Fetched 1855 B in 0s (97.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap-2.5-0 liblerc3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xtable r-cran-yaml shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc libcoarrays-dev groff apache2 | lighttpd | httpd liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev icu-doc libjs-jquery-ui-docs liblzma-doc ncurses-doc libscalar-number-perl readline-doc librsvg2-bin tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser nodejs libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-rsqlite r-cran-scatterplot3d r-cran-gplots r-bioc-fmcsr r-cran-snow r-cran-rpostgresql r-bioc-biocstyle r-cran-knitr r-cran-rmarkdown r-cran-biocmanager r-cran-callr r-cran-covr r-cran-processx r-cran-ps r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-curl r-cran-testthat r-cran-xml2 r-cran-rmysql r-cran-testit r-cran-unitizer r-cran-spelling r-cran-forcats r-cran-r.utils r-cran-stringr r-cran-waldo r-cran-cairo r-cran-ragg r-cran-magick r-cran-sf r-cran-httr r-cran-r.rsp r-cran-tidyverse r-cran-getopt r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-purrr r-cran-roxygen2 r-cran-inline r-cran-xml r-cran-usethis r-cran-svglite r-cran-dichromat r-cran-markdown r-cran-bench r-cran-blob r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-tidyr r-cran-zeallot r-cran-plm r-cran-zoo Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libclone-perl node-jquery libldap-common libdevel-partialdump-perl libpng-tools publicsuffix librsvg2-common libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-rmarkdown r-cran-thematic r-cran-knitr r-cran-testthat r-cran-curl r-cran-mockery r-cran-covr r-cran-dplyr r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-markdown r-cran-sp r-cran-lubridate r-cran-future r-cran-bit64 r-cran-hms r-cran-dygraphs r-cran-data.table r-cran-rsqlite r-cran-mockr r-cran-formattable r-cran-generics r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome fonts-glyphicons-halflings gettext gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian javascript-common libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo-gobject2 libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js libjs-popper.js libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 libldap-2.5-0 liblerc3 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librsvg2-2 librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db node-bootstrap-sass node-html5shiv node-normalize.css pkg-config po-debconf r-base-core r-base-dev r-bioc-biocgenerics r-bioc-chemminer r-cran-base64enc r-cran-bh r-cran-bitops r-cran-bslib r-cran-cachem r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-dbi r-cran-digest r-cran-dt r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rjson r-cran-rlang r-cran-rsvg r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xtable r-cran-yaml sbuild-build-depends-main-dummy shared-mime-info ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 271 newly installed, 0 to remove and 0 not upgraded. Need to get 151 MB of archives. After this operation, 498 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [706 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main armhf libmd0 armhf 1.0.4-2 [22.2 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main armhf libbsd0 armhf 0.11.6-1 [39.8 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main armhf libelf1 armhf 0.187-2 [43.8 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main armhf libexpat1 armhf 2.4.8-2 [63.6 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main armhf libfribidi0 armhf 1.0.8-2.1ubuntu1 [23.6 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main armhf libglib2.0-0 armhf 2.73.3-3 [1337 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main armhf libicu71 armhf 71.1-3 [10.3 MB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main armhf libxml2 armhf 2.9.14+dfsg-1 [592 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main armhf shared-mime-info armhf 2.2-1 [457 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main armhf ucf all 3.0043 [56.1 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main armhf bsdextrautils armhf 2.38-4ubuntu1 [76.6 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main armhf libmagic-mgc armhf 1:5.41-4 [257 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main armhf libmagic1 armhf 1:5.41-4 [80.1 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main armhf file armhf 1:5.41-4 [20.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main armhf gettext-base armhf 0.21-8 [37.6 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main armhf groff-base armhf 1.22.4-8build1 [870 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main armhf libnghttp2-14 armhf 1.49.0-1 [67.9 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main armhf libpipeline1 armhf 1.5.6-2 [26.1 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main armhf libpsl5 armhf 0.21.0-1.2build2 [56.9 kB] Get:22 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armhf 1.4.19-1 [236 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main armhf autoconf all 2.71-2 [338 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main armhf autopoint all 0.21-8 [421 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main armhf dctrl-tools armhf 2.24-3build2 [57.2 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main armhf libdebhelper-perl all 13.9.1ubuntu1 [66.4 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main armhf libtool all 2.4.7-4 [166 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main armhf dh-autoreconf all 20 [16.1 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-override-perl all 0.09-3 [9756 B] Get:43 http://ftpmaster.internal/ubuntu kinetic/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main armhf dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:45 http://ftpmaster.internal/ubuntu kinetic/main armhf libdw1 armhf 0.187-2 [223 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main armhf dwz armhf 0.14-1build2 [99.2 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main armhf gettext armhf 0.21-8 [802 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main armhf debhelper all 13.9.1ubuntu1 [939 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main armhf zip armhf 3.0-12build2 [166 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main armhf unzip armhf 6.0-27ubuntu1 [162 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main armhf libpaper1 armhf 1.1.28build2 [12.8 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main armhf libpaper-utils armhf 1.1.28build2 [8242 B] Get:56 http://ftpmaster.internal/ubuntu kinetic/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main armhf libblas3 armhf 3.10.1-2 [115 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main armhf libbrotli1 armhf 1.0.9-2build6 [306 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [324 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main armhf fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main armhf fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main armhf libfontconfig1 armhf 2.13.1-4.4ubuntu1 [107 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main armhf libpixman-1-0 armhf 0.40.0-1build4 [177 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] Get:66 http://ftpmaster.internal/ubuntu kinetic/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main armhf libcairo2 armhf 1.16.0-5ubuntu2 [549 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-6ubuntu2 [18.7 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main armhf libsasl2-2 armhf 2.1.28+dfsg-6ubuntu2 [52.4 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main armhf libldap-2.5-0 armhf 2.5.12+dfsg-2ubuntu2 [156 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build4 [52.8 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main armhf libssh-4 armhf 0.9.6-2build1 [165 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main armhf libcurl4 armhf 7.85.0-1 [252 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main armhf libjpeg-turbo8 armhf 2.1.2-0ubuntu1 [116 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main armhf libjpeg8 armhf 8c-2ubuntu10 [2266 B] Get:76 http://ftpmaster.internal/ubuntu kinetic/main armhf libgfortran5 armhf 12.2.0-2ubuntu1 [295 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main armhf liblapack3 armhf 3.10.1-2 [1941 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main armhf fontconfig armhf 2.13.1-4.4ubuntu1 [181 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main armhf libgraphite2-3 armhf 1.3.14-1build2 [65.2 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main armhf libharfbuzz0b armhf 2.7.4-1ubuntu5 [333 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main armhf libthai-data all 0.1.29-1build1 [162 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main armhf libdatrie1 armhf 0.2.13-2 [16.8 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main armhf libthai0 armhf 0.1.29-1build1 [15.8 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [204 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [43.8 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [32.7 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main armhf libtcl8.6 armhf 8.6.12+dfsg-1build1 [911 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main armhf libdeflate0 armhf 1.12-1 [64.1 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main armhf libjbig0 armhf 2.1-3.1build3 [25.1 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main armhf liblerc3 armhf 3.0+ds-1ubuntu1 [106 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main armhf libwebp7 armhf 1.2.2-2 [166 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main armhf libtiff5 armhf 4.4.0-4ubuntu3 [170 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main armhf libxft2 armhf 2.3.4-1 [35.1 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main armhf libxss1 armhf 1:1.2.3-1build2 [7580 B] Get:96 http://ftpmaster.internal/ubuntu kinetic/main armhf libtk8.6 armhf 8.6.12-1build1 [689 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB] Get:99 http://ftpmaster.internal/ubuntu kinetic/main armhf libxt6 armhf 1:1.2.1-1 [146 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-base-core armhf 4.2.1-1ubuntu1 [27.9 MB] Get:101 http://ftpmaster.internal/ubuntu kinetic/main armhf libgfortran-12-dev armhf 12.2.0-2ubuntu1 [351 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic/main armhf 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kB] Get:132 http://ftpmaster.internal/ubuntu kinetic/main armhf libhttp-date-perl all 6.05-1 [9920 B] Get:133 http://ftpmaster.internal/ubuntu kinetic/main armhf libio-html-perl all 1.004-3 [15.9 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/main armhf liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/main armhf liburi-perl all 5.12-1ubuntu1 [80.7 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic/main armhf libhttp-message-perl all 6.37-1 [76.3 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/main armhf libparams-util-perl armhf 1.102-1build3 [21.4 kB] Get:138 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-install-perl all 0.928-2 [10.2 kB] Get:139 http://ftpmaster.internal/ubuntu kinetic/main armhf libdata-optlist-perl all 0.112-1 [11.0 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic/main armhf libb-hooks-op-check-perl armhf 0.22-2 [10.1 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/main armhf 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armhf 0.10-2 [13.9 kB] Get:151 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-exporter-progressive-perl all 0.001013-2 [7248 B] Get:152 http://ftpmaster.internal/ubuntu kinetic/universe armhf libdevel-globaldestruction-perl all 0.14-2 [6780 B] Get:153 http://ftpmaster.internal/ubuntu kinetic/universe armhf libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:154 http://ftpmaster.internal/ubuntu kinetic/universe armhf libclass-c3-perl all 0.35-1 [19.0 kB] Get:155 http://ftpmaster.internal/ubuntu kinetic/universe armhf libmro-compat-perl all 0.15-1 [11.7 kB] Get:156 http://ftpmaster.internal/ubuntu kinetic/universe armhf libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:157 http://ftpmaster.internal/ubuntu kinetic/main armhf libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:158 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-exporter-perl all 0.988-1 [50.6 kB] Get:159 http://ftpmaster.internal/ubuntu kinetic/universe armhf libeval-closure-perl all 0.14-2 [10.8 kB] Get:160 http://ftpmaster.internal/ubuntu kinetic/universe armhf libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:161 http://ftpmaster.internal/ubuntu kinetic/universe armhf libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:162 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-name-perl armhf 0.26-2 [11.1 kB] Get:163 http://ftpmaster.internal/ubuntu kinetic/universe armhf libpackage-deprecationmanager-perl all 0.17-2 [15.8 kB] Get:164 http://ftpmaster.internal/ubuntu kinetic/main armhf libpackage-stash-xs-perl armhf 0.30-1 [17.6 kB] Get:165 http://ftpmaster.internal/ubuntu kinetic/universe armhf libmoose-perl armhf 2.2200-1build1 [747 kB] Get:166 http://ftpmaster.internal/ubuntu kinetic/main armhf libvariable-magic-perl armhf 0.62-2 [32.7 kB] Get:167 http://ftpmaster.internal/ubuntu kinetic/main armhf libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main armhf libsub-identify-perl armhf 0.14-2 [10.5 kB] Get:169 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armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] Get:188 http://ftpmaster.internal/ubuntu kinetic/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:189 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:190 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get:191 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-sifter.js all 0.6.0+dfsg-2 [12.8 kB] Get:192 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:193 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:194 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] Get:195 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-json all 0~20210531+~1.0.8-1 [20.5 kB] Get:196 http://ftpmaster.internal/ubuntu kinetic/main armhf librsvg2-2 armhf 2.54.4+dfsg-1ubuntu1 [2597 kB] Get:197 http://ftpmaster.internal/ubuntu kinetic/universe armhf node-bootstrap-sass all 3.4.3-2 [187 kB] Get:198 http://ftpmaster.internal/ubuntu kinetic/universe armhf node-html5shiv all 3.7.3+dfsg-4 [13.6 kB] Get:199 http://ftpmaster.internal/ubuntu kinetic/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB] Get:200 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-bioc-biocgenerics all 0.42.0-1 [586 kB] Get:201 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-littler armhf 0.3.15-1 [85.5 kB] Get:202 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-rjson armhf 0.2.21-1 [142 kB] Get:203 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-bitops armhf 1.0-7-1 [29.4 kB] Get:204 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-rcurl armhf 1.98-1.8+dfsg-1 [783 kB] Get:205 http://ftpmaster.internal/ubuntu kinetic/universe armhf 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kinetic/universe armhf r-cran-matrix armhf 1.4-1-1 [4275 kB] Get:216 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-mgcv armhf 1.8-40-1 [2945 kB] Get:217 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-rlang armhf 1.0.4-1 [1610 kB] Get:218 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-farver armhf 2.1.1-1 [1346 kB] Get:219 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-labeling all 0.4.2-1 [62.6 kB] Get:220 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-lifecycle all 1.0.1-1 [105 kB] Get:221 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-colorspace armhf 2.0-3+dfsg-1 [1542 kB] Get:222 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-munsell all 0.5.0-2build1 [208 kB] Get:223 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB] Get:224 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 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kinetic/universe armhf r-cran-htmlwidgets all 1.5.4+dfsg-1 [125 kB] Get:245 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-lazyeval armhf 0.2.2-1build1 [142 kB] Get:246 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-later armhf 1.3.0+dfsg-1 [117 kB] Get:247 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-promises armhf 1.2.0.1+dfsg-1 [278 kB] Get:248 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-httpuv armhf 1.6.5+dfsg-1 [474 kB] Get:249 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-mime armhf 0.12-1 [35.5 kB] Get:250 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-xtable all 1:1.8-4-2 [689 kB] Get:251 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-fontawesome all 0.3.0-1 [1442 kB] Get:252 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-sourcetools armhf 0.1.7-3 [43.1 kB] Get:253 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-crayon all 1.5.1-1 [162 kB] Get:254 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-commonmark armhf 1.8.0-1 [109 kB] Get:255 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-fs armhf 1.5.2+dfsg-1 [225 kB] Get:256 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-rappdirs armhf 0.3.3-1 [47.4 kB] Get:257 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-sass armhf 0.4.2+dfsg-1 [889 kB] Get:258 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-jquerylib all 0.1.4+dfsg-3 [13.3 kB] Get:259 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-cachem armhf 1.0.6-1 [70.2 kB] Get:260 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-memoise all 2.0.1-1 [53.9 kB] Get:261 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-bslib all 0.4.0+dfsg-1 [3667 kB] Get:262 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-ellipsis armhf 0.3.2-2 [35.0 kB] Get:263 http://ftpmaster.internal/ubuntu kinetic/universe armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] Get:264 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-shiny all 1.7.2+dfsg-1 [2701 kB] Get:265 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-crosstalk all 1.2.0+dfsg-1 [175 kB] Get:266 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-dt all 0.24+dfsg-1 [235 kB] Get:267 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-rsvg armhf 2.3.1-1 [194 kB] Get:268 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-stringi armhf 1.7.8-1 [851 kB] Get:269 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-bh all 1.74.0-2 [5564 B] Get:270 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-bioc-chemminer armhf 3.48.0+dfsg-1 [1165 kB] Get:271 http://ftpmaster.internal/ubuntu kinetic/universe armhf r-cran-runit all 0.4.32-3 [283 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 151 MB in 36s (4179 kB/s) 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Setting up libpixman-1-0:armhf (0.40.0-1build4) ... Setting up libicu71:armhf (71.1-3) ... Setting up libfile-which-perl (1.27-1) ... Setting up libxau6:armhf (1:1.0.9-1build5) ... Setting up libncurses-dev:armhf (6.3+20220423-2) ... Setting up libpsl5:armhf (0.21.0-1.2build2) ... Setting up libboost1.74-dev:armhf (1.74.0-17ubuntu1) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libpcre16-3:armhf (2:8.39-14) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libdatrie1:armhf (0.2.13-2) ... Setting up libjs-popper.js (1.16.1+ds-5) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libglib2.0-0:armhf (2.73.3-3) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-2) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up libscalar-list-utils-perl (1:1.62-1) ... Setting up unzip (6.0-27ubuntu1) ... 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Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-6ubuntu2) ... Setting up zip (3.0-12build2) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:armhf (10.40-1ubuntu1) ... Setting up libblas3:armhf (3.10.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libuv1:armhf (1.44.2-1) ... Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:armhf (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.8.1-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build4) ... Setting up liblerc3:armhf (3.0+ds-1ubuntu1) ... Setting up libfribidi0:armhf (1.0.8-2.1ubuntu1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libpcre32-3:armhf (2:8.39-14) ... Setting up libvariable-magic-perl (0.62-2) ... 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Setting up xdg-utils (1.1.3-4.1ubuntu3) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.12-1ubuntu1) ... Setting up libblas-dev:armhf (3.10.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libbz2-dev:armhf (1.0.8-5build1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up libjpeg8:armhf (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libpaper1:armhf (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:armhf (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:armhf (0.187-2) ... Setting up libjpeg-turbo8-dev:armhf (2.1.2-0ubuntu1) ... Setting up libxdmcp6:armhf (1:1.1.3-0ubuntu5) ... Setting up liblapack3:armhf (3.10.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-8) ... Setting up libpcre2-dev:armhf (10.40-1ubuntu1) ... Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libpcre3-dev:armhf (2:8.39-14) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:armhf (1.6.37-5) ... Setting up libgfortran-12-dev:armhf (12.2.0-2ubuntu1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu4) ... Setting up libldap-2.5-0:armhf (2.5.12+dfsg-2ubuntu2) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1build1) ... Setting up gfortran-12 (12.2.0-2ubuntu1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up shared-mime-info (2.2-1) ... Setting up liblapack-dev:armhf (3.10.1-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:armhf (7.85.0-1) ... Setting up libx11-6:armhf (2:1.8.1-2) ... Setting up libtiff5:armhf (4.4.0-4ubuntu3) ... Setting up libmro-compat-perl (0.15-1) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu10) ... Setting up libsm6:armhf (2:1.2.3-1build2) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libeval-closure-perl (0.14-2) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:armhf (0.015-2) ... Setting up libjpeg-dev:armhf (8c-2ubuntu10) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up libcurl3-gnutls:armhf (7.85.0-1) ... Setting up man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:12.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1) ... Setting up xauth (1:1.1.1-1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.9+dfsg-1) ... Setting up libxss1:armhf (1:1.2.3-1build2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libwww-curl-perl (4.17-7build2) ... Setting up debhelper (13.9.1ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-1) ... Setting up libpackage-deprecationmanager-perl (0.17-2) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libmoose-perl:armhf (2.2200-1build1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Processing triggers for libc-bin (2.36-0ubuntu2) ... Processing triggers for sgml-base (1.30) ... Setting up libfontconfig1:armhf (2.13.1-4.4ubuntu1) ... Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Setting up libxft2:armhf (2.3.4-1) ... Setting up libtk8.6:armhf (8.6.12-1build1) ... Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ... Setting up libcairo2:armhf (1.16.0-5ubuntu2) ... Setting up libcairo-gobject2:armhf (1.16.0-5ubuntu2) ... Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ... Setting up librsvg2-2:armhf (2.54.4+dfsg-1ubuntu1) ... Setting up r-base-core (4.2.1-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.1-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2build1) ... 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Setting up r-cran-dbi (1.1.3-1) ... Setting up r-cran-fansi (1.0.3-1) ... Setting up r-cran-mass (7.3-58.1-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.3.0-1) ... Setting up r-cran-lifecycle (1.0.1-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-cran-jsonlite (1.8.0+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-cran-utf8 (1.2.2-1) ... Setting up r-cran-colorspace (2.0-3+dfsg-1) ... Setting up r-cran-stringi (1.7.8-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... Setting up r-cran-isoband (0.2.5-1) ... Setting up r-cran-runit (0.4.32-3) ... Setting up r-cran-gridextra (2.3-3build1) ... Setting up r-cran-later (1.3.0+dfsg-1) ... Setting up r-cran-matrix (1.4-1-1) ... Setting up r-cran-htmltools (0.5.3-1) ... Setting up r-cran-mgcv (1.8-40-1) ... Setting up r-cran-cachem (1.0.6-1) ... Setting up r-cran-sass (0.4.2+dfsg-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.8+dfsg-1) ... Setting up r-cran-vctrs (0.4.1-2) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up r-cran-fontawesome (0.3.0-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-3) ... Setting up r-cran-htmlwidgets (1.5.4+dfsg-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ... Setting up r-cran-httpuv (1.6.5+dfsg-1) ... Setting up r-cran-bslib (0.4.0+dfsg-1) ... Setting up r-cran-shiny (1.7.2+dfsg-1) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-cran-dt (0.24+dfsg-1) ... Setting up r-bioc-chemminer (3.48.0+dfsg-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-125-generic #141-Ubuntu SMP Wed Aug 10 14:03:41 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.39-1ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-2ubuntu1 gcc-12_12.2.0-2ubuntu1 libc6-dev_2.36-0ubuntu2 libstdc++-12-dev_12.2.0-2ubuntu1 libstdc++6_12.2.0-2ubuntu1 linux-libc-dev_5.19.0-15.15 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.6.0 bash_5.2~rc2-2ubuntu1 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https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics Package-List: r-bioc-fmcsr deb gnu-r optional arch=any Checksums-Sha1: 3ecc09bd7d078cae48315a730475c76ce8693602 65304 r-bioc-fmcsr_1.38.0+dfsg.orig.tar.xz ea799270bb546a716d1139179f363a2b47b2c93b 5876 r-bioc-fmcsr_1.38.0+dfsg-1.debian.tar.xz Checksums-Sha256: 54ee824c34a13cc0cc4bfc22d1d75917745abb2b144ea5ef6773fb59bd138fa4 65304 r-bioc-fmcsr_1.38.0+dfsg.orig.tar.xz 068de0febb72a4843ad49781822f8646595279f408900a2dd67ec32395d0773f 5876 r-bioc-fmcsr_1.38.0+dfsg-1.debian.tar.xz Files: 8d01aacf9b855e77ad490a7b8b85f607 65304 r-bioc-fmcsr_1.38.0+dfsg.orig.tar.xz cd1c77ab2773512ac4d9458ea1bb2692 5876 r-bioc-fmcsr_1.38.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmJ+MGYRHHRpbGxlQGRl 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./r-bioc-fmcsr_1.38.0+dfsg-1.dsc dpkg-source: info: extracting r-bioc-fmcsr in /<> dpkg-source: info: unpacking r-bioc-fmcsr_1.38.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-fmcsr_1.38.0+dfsg-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24443626 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24443626 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24443626 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package r-bioc-fmcsr dpkg-buildpackage: info: source version 1.38.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary-arch dh binary-arch --buildsystem R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R configure.ac:32: warning: AC_OUTPUT should be used without arguments. configure.ac:32: You should run autoupdate. dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-fmcsr/ -a -O--buildsystem=R I: R Package: fmcsR Version: 1.38.0 I: Building using R version 4.2.1-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 13 May 2022 12:15:28 +0200 mkdir -p /<>/r-bioc-fmcsr-1.38.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-fmcsr-1.38.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 13 May 2022 12:15:28 +0200'" * installing *source* package ‘fmcsR’ ... ** using staged installation checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for alarm... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating config.h ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-Milxxa/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCS.cpp -o MCS.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-Milxxa/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSCompound.cpp -o MCSCompound.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-Milxxa/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSMap.cpp -o MCSMap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-Milxxa/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSRingDetector.cpp -o MCSRingDetector.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-Milxxa/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmcs_R_wrap.cpp -o fmcs_R_wrap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-Milxxa/r-base-4.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.cpp -o util.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o fmcsR.so MCS.o MCSCompound.o MCSMap.o MCSRingDetector.o fmcs_R_wrap.o util.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-fmcsr/usr/lib/R/site-library/00LOCK-r-bioc-fmcsr-1.38.0+dfsg/00new/fmcsR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmcsR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304. W: Ignoring specified R dependency: R (>= 2.10.0) I: Using r-bioc-chemminer for Depends:ChemmineR I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:knitcitations W: Cannot find a debian package for Suggests:knitrBootstrap I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-runit for Imports:RUnit I: Using r-bioc-chemminer for Imports:ChemmineR I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: BioConductor API version: r-api-bioc-3.15 I: Use r-bioc-fmcsr as Debian binary package for variables substitution dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installsystemduser -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R 91558eb51328d9f8057cb11a6bbce3f25abb9caa dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-fmcsr (in debian/r-bioc-fmcsr); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-fmcsr/DEBIAN/control, package r-bioc-fmcsr, directory debian/r-bioc-fmcsr pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-fmcsr ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-fmcsr' in '../r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=any -O../r-bioc-fmcsr_1.38.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../r-bioc-fmcsr_1.38.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-09-19T04:43:22Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.38.0+dfsg-1_armhf.changes: ----------------------------------------- Format: 1.8 Date: Fri, 13 May 2022 12:15:28 +0200 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Built-For-Profiles: noudeb Architecture: armhf Version: 1.38.0+dfsg-1 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-fmcsr - GNU R mismatch tolerant maximum common substructure searching Changes: r-bioc-fmcsr (1.38.0+dfsg-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.1 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Fix lintian override Checksums-Sha1: 590a180977f681f00ff8697a34868be6e958f4f6 14099 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.buildinfo 21fa6e0159ea6b1e670f3bf41d70f8cf26083163 221336 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Checksums-Sha256: b533e811727290099205e847bb5df96b921aea216b4747df97a7d87d3530720c 14099 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.buildinfo 7f70e8eb7b7136fea2419362ed5ea32e4571ff0df03eb99da8f1791a1b718830 221336 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Files: a35929baa7dbda2065d54f6b3594964c 14099 gnu-r optional r-bioc-fmcsr_1.38.0+dfsg-1_armhf.buildinfo cfb2287b55912bb8b67ca59c6a2384ea 221336 gnu-r optional r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb /<>/r-bioc-fmcsr_1.38.0+dfsg-1_armhf.changes.new could not be renamed to /<>/r-bioc-fmcsr_1.38.0+dfsg-1_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Architecture: armhf Version: 1.38.0+dfsg-1 Checksums-Md5: cfb2287b55912bb8b67ca59c6a2384ea 221336 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Checksums-Sha1: 21fa6e0159ea6b1e670f3bf41d70f8cf26083163 221336 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Checksums-Sha256: 7f70e8eb7b7136fea2419362ed5ea32e4571ff0df03eb99da8f1791a1b718830 221336 r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb Build-Origin: Ubuntu Build-Architecture: armhf Build-Date: Mon, 19 Sep 2022 04:43:22 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.6.0), bash (= 5.2~rc2-2ubuntu1), binutils (= 2.39-1ubuntu1), binutils-arm-linux-gnueabihf (= 2.39-1ubuntu1), binutils-common (= 2.39-1ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-2ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.79ubuntu1), debhelper (= 13.9.1ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-2ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-2ubuntu1), gcc-12-base (= 12.2.0-2ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), gfortran (= 4:12.2.0-1ubuntu1), gfortran-12 (= 12.2.0-2ubuntu1), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), javascript-common (= 11+nmu1), libacl1 (= 2.3.1-1), libalgorithm-c3-perl (= 0.11-1), libapparmor1 (= 3.0.7-1ubuntu1), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan8 (= 12.2.0-2ubuntu1), libatomic1 (= 12.2.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2), libbinutils (= 2.39-1ubuntu1), libblas-dev (= 3.10.1-2), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0-17ubuntu1), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu2), libc-dev-bin (= 2.36-0ubuntu2), libc6 (= 2.36-0ubuntu2), libc6-dev (= 2.36-0ubuntu2), libcairo-gobject2 (= 1.16.0-5ubuntu2), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-2ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-2), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2ubuntu1), libctf-nobfd0 (= 2.39-1ubuntu1), libctf0 (= 2.39-1ubuntu1), libcurl3-gnutls (= 7.85.0-1), libcurl4 (= 7.85.0-1), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.9.1ubuntu1), libdeflate0 (= 1.12-1), libdevel-callchecker-perl (= 0.008-1ubuntu4), libdevel-globaldestruction-perl (= 0.14-2), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdevmapper1.02.1 (= 2:1.02.185-1ubuntu1), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-2), libdynaloader-functions-perl (= 0.003-2), libelf1 (= 0.187-2), libencode-locale-perl (= 1.05-2), libeval-closure-perl (= 0.14-2), libexpat1 (= 2.4.8-2), libfdisk1 (= 2.38-4ubuntu1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfile-which-perl (= 1.27-1), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2.1ubuntu1), libgcc-12-dev (= 12.2.0-2ubuntu1), libgcc-s1 (= 12.2.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgdk-pixbuf-2.0-0 (= 2.42.9+dfsg-1), libgdk-pixbuf2.0-common (= 2.42.9+dfsg-1), libgfortran-12-dev (= 12.2.0-2ubuntu1), libgfortran5 (= 12.2.0-2ubuntu1), libglib2.0-0 (= 2.73.3-3), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgnutls30 (= 3.7.7-2ubuntu1), libgomp1 (= 12.2.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20-1), libharfbuzz0b (= 2.7.4-1ubuntu5), libhogweed6 (= 3.8.1-2), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.37-1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 71.1-3), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1), libio-html-perl (= 1.004-3), libip4tc2 (= 1.8.7-1ubuntu6), libisl23 (= 0.25-1), libjbig0 (= 2.1-3.1build3), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libjs-bootstrap (= 3.4.1+dfsg-2), libjs-bootstrap4 (= 4.6.1+dfsg1-3), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.6.7-1), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-jquery-datatables-extensions (= 0.0+git20150910.28fd64e+dfsg-5), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-ui (= 1.13.2+dfsg-1), libjs-json (= 0~20210531+~1.0.8-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-popper.js (= 1.16.1+ds-5), libjs-sifter.js (= 0.6.0+dfsg-2), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblapack-dev (= 3.10.1-2), liblapack3 (= 3.10.1-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu2), liblerc3 (= 3.0+ds-1ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2200-1build1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libmro-compat-perl (= 0.15-1), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.3+20220423-2), libncurses5-dev (= 6.3+20220423-2), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.49.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1ubuntu1), libpackage-deprecationmanager-perl (= 0.17-2), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.30-1), libpam-modules (= 1.5.2-2ubuntu1), libpam-modules-bin (= 1.5.2-2ubuntu1), libpam-runtime (= 1.5.2-2ubuntu1), libpam0g (= 1.5.2-2ubuntu1), libpango-1.0-0 (= 1.50.10+ds-1), libpangocairo-1.0-0 (= 1.50.10+ds-1), libpangoft2-1.0-0 (= 1.50.10+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libparams-classify-perl (= 0.015-2), libparams-util-perl (= 1.102-1build3), libpcre16-3 (= 2:8.39-14), libpcre2-16-0 (= 10.40-1ubuntu1), libpcre2-32-0 (= 10.40-1ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libpcre2-dev (= 10.40-1ubuntu1), libpcre2-posix3 (= 10.40-1ubuntu1), libpcre3 (= 2:8.39-14), libpcre3-dev (= 2:8.39-14), libpcre32-3 (= 2:8.39-14), libpcrecpp0v5 (= 2:8.39-14), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-2), libpixman-1-0 (= 0.40.0-1build4), libpng-dev (= 1.6.37-5), libpng16-16 (= 1.6.37-5), libpsl5 (= 0.21.0-1.2build2), libreadline-dev (= 8.2~rc2-2), libreadline8 (= 8.2~rc2-2), librsvg2-2 (= 2.54.4+dfsg-1ubuntu1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu2), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu2), libscalar-list-utils-perl (= 1:1.62-1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1), libsepol2 (= 3.4-2), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.5-2ubuntu1), libstdc++-12-dev (= 12.2.0-2ubuntu1), libstdc++6 (= 12.2.0-2ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-2), libsub-identify-perl (= 0.14-2), libsub-install-perl (= 0.928-2), libsub-name-perl (= 0.26-2), libsub-override-perl (= 0.09-3), libswitch-perl (= 2.17-3), libsystemd-shared (= 251.4-1ubuntu4), libsystemd0 (= 251.4-1ubuntu4), libtasn1-6 (= 4.18.0-4build1), libtcl8.6 (= 8.6.12+dfsg-1build1), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0-4ubuntu3), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtk8.6 (= 8.6.12-1build1), libtool (= 2.4.7-4), libtry-tiny-perl (= 0.31-1), libubsan1 (= 12.2.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu4), libunistring2 (= 1.0-1), liburi-perl (= 5.12-1ubuntu1), libuuid1 (= 2.38-4ubuntu1), libuv1 (= 1.44.2-1), libvariable-magic-perl (= 0.62-2), libwebp7 (= 1.2.2-2), libwww-curl-perl (= 4.17-7build2), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.8.1-2), libx11-data (= 2:1.8.1-2), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.4-1), libxml2 (= 2.9.14+dfsg-1), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-15.15), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), mount (= 2.38-4ubuntu1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), node-bootstrap-sass (= 3.4.3-2), node-html5shiv (= 3.7.3+dfsg-4), node-normalize.css (= 8.0.1-5), openssl (= 3.0.5-2ubuntu1), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.2.1-1ubuntu1), r-base-dev (= 4.2.1-1ubuntu1), r-bioc-biocgenerics (= 0.42.0-1), r-bioc-chemminer (= 3.48.0+dfsg-1), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.74.0-2), r-cran-bitops (= 1.0-7-1), r-cran-bslib (= 0.4.0+dfsg-1), r-cran-cachem (= 1.0.6-1), r-cran-cli (= 3.3.0-1), r-cran-colorspace (= 2.0-3+dfsg-1), r-cran-commonmark (= 1.8.0-1), r-cran-crayon (= 1.5.1-1), r-cran-crosstalk (= 1.2.0+dfsg-1), r-cran-dbi (= 1.1.3-1), r-cran-digest (= 0.6.29-1), r-cran-dt (= 0.24+dfsg-1), r-cran-ellipsis (= 0.3.2-2), r-cran-fansi (= 1.0.3-1), r-cran-farver (= 2.1.1-1), r-cran-fastmap (= 1.1.0-1), r-cran-fontawesome (= 0.3.0-1), r-cran-fs (= 1.5.2+dfsg-1), r-cran-ggplot2 (= 3.3.6+dfsg-1), r-cran-glue (= 1.6.2-1), r-cran-gridextra (= 2.3-3build1), r-cran-gtable (= 0.3.0+dfsg-2build1), r-cran-htmltools (= 0.5.3-1), r-cran-htmlwidgets (= 1.5.4+dfsg-1), r-cran-httpuv (= 1.6.5+dfsg-1), r-cran-isoband (= 0.2.5-1), r-cran-jquerylib (= 0.1.4+dfsg-3), r-cran-jsonlite (= 1.8.0+dfsg-1), r-cran-labeling (= 0.4.2-1), r-cran-later (= 1.3.0+dfsg-1), r-cran-lattice (= 0.20-45-3), r-cran-lazyeval (= 0.2.2-1build1), r-cran-lifecycle (= 1.0.1-1), r-cran-littler (= 0.3.15-1), r-cran-magrittr (= 2.0.3-1), r-cran-mass (= 7.3-58.1-1), r-cran-matrix (= 1.4-1-1), r-cran-memoise (= 2.0.1-1), r-cran-mgcv (= 1.8-40-1), r-cran-mime (= 0.12-1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.159-1), r-cran-pillar (= 1.8.1+dfsg-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.2-2), r-cran-png (= 0.1-7-4), r-cran-promises (= 1.2.0.1+dfsg-1), r-cran-r6 (= 2.5.1-1), r-cran-rappdirs (= 0.3.3-1), r-cran-rcolorbrewer (= 1.1-3-1build1), r-cran-rcpp (= 1.0.9-1), r-cran-rcurl (= 1.98-1.8+dfsg-1), r-cran-rjson (= 0.2.21-1), r-cran-rlang (= 1.0.4-1), r-cran-rsvg (= 2.3.1-1), r-cran-runit (= 0.4.32-3), r-cran-sass (= 0.4.2+dfsg-1), r-cran-scales (= 1.2.1-1), r-cran-shiny (= 1.7.2+dfsg-1), r-cran-sourcetools (= 0.1.7-3), r-cran-stringi (= 1.7.8-1), r-cran-tibble (= 3.1.8+dfsg-1), r-cran-utf8 (= 1.2.2-1), r-cran-vctrs (= 0.4.1-2), r-cran-viridislite (= 0.4.1-1), r-cran-withr (= 2.5.0-1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.3.5-1), readline-common (= 8.2~rc2-2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sgml-base (= 1.30), shared-mime-info (= 2.2-1), systemd (= 251.4-1ubuntu4), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), tzdata (= 2022c-1ubuntu3), ucf (= 3.0043), unzip (= 6.0-27ubuntu1), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.1-1), xdg-utils (= 1.1.3-4.1ubuntu3), xz-utils (= 5.2.5-2.1), zip (= 3.0-12build2), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-4.1ubuntu1) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1652436928" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-fmcsr_1.38.0+dfsg-1_armhf.deb ------------------------------------ new Debian package, version 2.0. size 221336 bytes: control archive=1808 bytes. 1273 bytes, 23 lines control 2382 bytes, 31 lines md5sums Package: r-bioc-fmcsr Version: 1.38.0+dfsg-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 407 Depends: r-base-core (>= 4.2.1-1ubuntu1), r-api-4.0, r-api-bioc-3.15, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 11) Suggests: r-bioc-biocstyle, r-cran-knitr, r-cran-rmarkdown Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/fmcsR/ Description: GNU R mismatch tolerant maximum common substructure searching The fmcsR package introduces an efficient maximum common substructure (MCS) algorithms combined with a novel matching strategy that allows for atom and/or bond mismatches in the substructures shared among two small molecules. The resulting flexible MCSs (FMCSs) are often larger than strict MCSs, resulting in the identification of more common features in their source structures, as well as a higher sensitivity in finding compounds with weak structural similarities. The fmcsR package provides several utilities to use the FMCS algorithm for pairwise compound comparisons, structure similarity searching and clustering. drwxr-xr-x root/root 0 2022-05-13 10:15 ./ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/ -rw-r--r-- root/root 86 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/CITATION -rw-r--r-- root/root 1763 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/DESCRIPTION -rw-r--r-- root/root 324 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/INDEX drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/Meta/ -rw-r--r-- root/root 540 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/Meta/Rd.rds -rw-r--r-- root/root 120 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/Meta/data.rds -rw-r--r-- root/root 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./usr/lib/R/site-library/fmcsR/R/fmcsR.rdx drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/data/ -rw-r--r-- root/root 4205 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/data/fmcstest.rda drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/doc/ -rw-r--r-- root/root 4598 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/doc/fmcsR.R -rw-r--r-- root/root 10924 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/doc/fmcsR.Rmd -rw-r--r-- root/root 1350 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/doc/index.html drwxr-xr-x root/root 0 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/help/ -rw-r--r-- root/root 362 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/help/AnIndex -rw-r--r-- root/root 219 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/help/aliases.rds -rw-r--r-- root/root 16370 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/help/fmcsR.rdb -rw-r--r-- root/root 316 2022-05-13 10:15 ./usr/lib/R/site-library/fmcsR/help/fmcsR.rdx -rw-r--r-- 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./usr/share/doc/r-bioc-fmcsr/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 2104 Build-Time: 25 Distribution: kinetic Host Architecture: armhf Install-Time: 62 Job: r-bioc-fmcsr_1.38.0+dfsg-1.dsc Machine Architecture: arm64 Package: r-bioc-fmcsr Package-Time: 89 Source-Version: 1.38.0+dfsg-1 Space: 2104 Status: successful Version: 1.38.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2022-09-19T04:43:22Z Build needed 00:01:29, 2104k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=armhf PACKAGEBUILD-24443626 Scanning for processes to kill in build PACKAGEBUILD-24443626