https://launchpad.net/ubuntu/+archive/test-rebuild-20220914-kinetic/+build/24439344 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-024 5.4.0-125-generic #141-Ubuntu SMP Wed Aug 10 14:03:41 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_221~588~ubuntu20.04.1 python3-lpbuildd_221~588~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.5 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 19 Sep 01:51:58 ntpdate[1805]: adjust time server 10.211.37.1 offset 0.000011 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24439344 --image-type chroot /home/buildd/filecache-default/2cc3432c5dbb6c77bd354aeee826c054f6445c78 Creating target for build PACKAGEBUILD-24439344 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24439344 Starting target for build PACKAGEBUILD-24439344 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24439344 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24439344 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24439344 Adding trusted keys to build-PACKAGEBUILD-24439344 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24439344 Updating target for build PACKAGEBUILD-24439344 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic InRelease [23.8 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic/main arm64 Packages [3740 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/volatile/ubuntu kinetic/main Translation-en [2684 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main arm64 Packages [1378 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe arm64 Packages [13.8 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5793 kB] Fetched 21.8 MB in 9s (2389 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 libhwasan0 libitm1 liblsan0 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtsan2 libubsan1 libudev1 linux-libc-dev lto-disabled-list systemd systemd-sysv usrmerge 26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 58.6 MB of archives. After this operation, 397 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main arm64 bash arm64 5.2~rc2-2ubuntu1 [787 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main arm64 systemd-sysv arm64 251.4-1ubuntu4 [11.2 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main arm64 systemd arm64 251.4-1ubuntu4 [2712 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsystemd-shared arm64 251.4-1ubuntu4 [1617 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsystemd0 arm64 251.4-1ubuntu4 [318 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main arm64 libcc1-0 arm64 12.2.0-2ubuntu1 [44.2 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgomp1 arm64 12.2.0-2ubuntu1 [122 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main arm64 libitm1 arm64 12.2.0-2ubuntu1 [27.9 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main arm64 libatomic1 arm64 12.2.0-2ubuntu1 [10.7 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main arm64 libasan8 arm64 12.2.0-2ubuntu1 [2375 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblsan0 arm64 12.2.0-2ubuntu1 [1027 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtsan2 arm64 12.2.0-2ubuntu1 [2514 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main arm64 libubsan1 arm64 12.2.0-2ubuntu1 [957 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main arm64 libhwasan0 arm64 12.2.0-2ubuntu1 [1109 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main arm64 gcc-12-base arm64 12.2.0-2ubuntu1 [19.2 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main arm64 libstdc++6 arm64 12.2.0-2ubuntu1 [647 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main arm64 g++-12 arm64 12.2.0-2ubuntu1 [10.9 MB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main arm64 libstdc++-12-dev arm64 12.2.0-2ubuntu1 [2154 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgcc-12-dev arm64 12.2.0-2ubuntu1 [1157 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main arm64 gcc-12 arm64 12.2.0-2ubuntu1 [19.1 MB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main arm64 cpp-12 arm64 12.2.0-2ubuntu1 [9581 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgcc-s1 arm64 12.2.0-2ubuntu1 [39.6 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main arm64 libudev1 arm64 251.4-1ubuntu4 [78.1 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main arm64 usrmerge all 29ubuntu2 [55.8 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main arm64 linux-libc-dev arm64 5.19.0-15.15 [1270 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main arm64 lto-disabled-list all 35 [12.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.6 MB in 51s (1152 kB/s) (Reading database ... 13593 files and directories currently installed.) Preparing to unpack .../bash_5.2~rc2-2ubuntu1_arm64.deb ... Unpacking bash (5.2~rc2-2ubuntu1) over (5.1-6ubuntu1) ... Setting up bash (5.2~rc2-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 13594 files and directories currently installed.) Preparing to unpack .../systemd-sysv_251.4-1ubuntu4_arm64.deb ... Unpacking systemd-sysv (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Preparing to unpack .../systemd_251.4-1ubuntu4_arm64.deb ... Unpacking systemd (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Preparing to unpack .../libsystemd-shared_251.4-1ubuntu4_arm64.deb ... Unpacking libsystemd-shared:arm64 (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Preparing to unpack .../libsystemd0_251.4-1ubuntu4_arm64.deb ... Unpacking libsystemd0:arm64 (251.4-1ubuntu4) over (251.4-1ubuntu1) ... Setting up libsystemd0:arm64 (251.4-1ubuntu4) ... (Reading database ... 13594 files and directories currently installed.) Preparing to unpack .../0-libcc1-0_12.2.0-2ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../1-libgomp1_12.2.0-2ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../2-libitm1_12.2.0-2ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../3-libatomic1_12.2.0-2ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../4-libasan8_12.2.0-2ubuntu1_arm64.deb ... Unpacking libasan8:arm64 (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../5-liblsan0_12.2.0-2ubuntu1_arm64.deb ... Unpacking liblsan0:arm64 (12.2.0-2ubuntu1) over (12.2.0-1ubuntu1) ... Preparing to unpack .../6-libtsan2_12.2.0-2ubuntu1_arm64.deb ... 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(Reading database ... 13594 files and directories currently installed.) Preparing to unpack .../usrmerge_29ubuntu2_all.deb ... Unpacking usrmerge (29ubuntu2) over (29ubuntu1) ... Preparing to unpack .../linux-libc-dev_5.19.0-15.15_arm64.deb ... Unpacking linux-libc-dev:arm64 (5.19.0-15.15) over (5.15.0-27.28) ... Preparing to unpack .../lto-disabled-list_35_all.deb ... Unpacking lto-disabled-list (35) over (33) ... Setting up lto-disabled-list (35) ... Setting up cpp-12 (12.2.0-2ubuntu1) ... Setting up linux-libc-dev:arm64 (5.19.0-15.15) ... Setting up libgomp1:arm64 (12.2.0-2ubuntu1) ... Setting up libatomic1:arm64 (12.2.0-2ubuntu1) ... Setting up libsystemd-shared:arm64 (251.4-1ubuntu4) ... Setting up usrmerge (29ubuntu2) ... Setting up libubsan1:arm64 (12.2.0-2ubuntu1) ... Setting up libhwasan0:arm64 (12.2.0-2ubuntu1) ... Setting up libasan8:arm64 (12.2.0-2ubuntu1) ... Setting up libtsan2:arm64 (12.2.0-2ubuntu1) ... Setting up libcc1-0:arm64 (12.2.0-2ubuntu1) ... Setting up liblsan0:arm64 (12.2.0-2ubuntu1) ... Setting up libitm1:arm64 (12.2.0-2ubuntu1) ... Setting up systemd (251.4-1ubuntu4) ... Initializing machine ID from random generator. Setting up libgcc-12-dev:arm64 (12.2.0-2ubuntu1) ... Setting up systemd-sysv (251.4-1ubuntu4) ... Setting up libstdc++-12-dev:arm64 (12.2.0-2ubuntu1) ... Setting up gcc-12 (12.2.0-2ubuntu1) ... Setting up g++-12 (12.2.0-2ubuntu1) ... Processing triggers for debianutils (5.7-0.3) ... Processing triggers for libc-bin (2.36-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24439344 arm64 kinetic -c chroot:build-PACKAGEBUILD-24439344 --arch=arm64 --dist=kinetic --nolog python-bx_0.8.13-1build1.dsc Initiating build PACKAGEBUILD-24439344 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-125-generic #141-Ubuntu SMP Wed Aug 10 14:03:41 UTC 2022 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-024.buildd +==============================================================================+ | python-bx 0.8.13-1build1 (arm64) Mon, 19 Sep 2022 01:53:09 +0000 | +==============================================================================+ Package: python-bx Version: 0.8.13-1build1 Source Version: 0.8.13-1build1 Distribution: kinetic Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24439344/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/python-bx-SYFoqt/resolver-T5nSrk' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- python-bx_0.8.13-1build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/python-bx-SYFoqt/python-bx-0.8.13' with '<>' I: NOTICE: Log filtering will replace 'build/python-bx-SYFoqt' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, python3-setuptools, python3-all-dev:any, python3-lzo, python3-pytest, python3-pytest-cython, python3-numpy, python3-six, cython3, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, python3-setuptools, python3-all-dev:any, python3-lzo, python3-pytest, python3-pytest-cython, python3-numpy, python3-six, cython3, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [445 B] Get:5 copy:/<>/apt_archive ./ Packages [517 B] Fetched 1919 B in 0s (26.8 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu71 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzo2-2 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-attr python3-dev python3-distutils python3-iniconfig python3-lib2to3 python3-lzo python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-pytest-cython python3-setuptools python3-six python3-tomli python3.10 python3.10-dev python3.10-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit python3-build python3-installer gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc gfortran python-numpy-doc subversion python-pyparsing-doc python-setuptools-doc python3.10-venv python3.10-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev libmail-sendmail-perl python3-pygments The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libdebhelper-perl libdw1 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libicu71 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzo2-2 libmagic-mgc libmagic1 libmpdec3 libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types po-debconf python3 python3-all python3-all-dev python3-attr python3-dev python3-distutils python3-iniconfig python3-lib2to3 python3-lzo python3-minimal python3-more-itertools python3-numpy python3-packaging python3-pkg-resources python3-pluggy python3-py python3-pyparsing python3-pytest python3-pytest-cython python3-setuptools python3-six python3-tomli python3.10 python3.10-dev python3.10-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 40.7 MB of archives. After this operation, 162 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [732 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10-minimal arm64 3.10.7-1 [798 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main arm64 libexpat1 arm64 2.4.8-2 [71.5 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3.10-minimal arm64 3.10.7-1 [1989 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-minimal arm64 3.10.6-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main arm64 media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmpdec3 arm64 2.5.1-2build2 [89.0 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10-stdlib arm64 3.10.7-1 [1762 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3.10 arm64 3.10.7-1 [497 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3-stdlib arm64 3.10.6-1 [6848 B] Get:11 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3 arm64 3.10.6-1 [22.3 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main arm64 libelf1 arm64 0.187-2 [51.2 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main arm64 libicu71 arm64 71.1-3 [10.5 MB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main arm64 libxml2 arm64 2.9.14+dfsg-1 [718 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-pkg-resources all 59.6.0-1.2 [132 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main arm64 bsdextrautils arm64 2.38-4ubuntu1 [69.6 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmagic-mgc arm64 1:5.41-4 [257 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main arm64 libmagic1 arm64 1:5.41-4 [85.0 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main arm64 file arm64 1:5.41-4 [21.6 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main arm64 gettext-base arm64 0.21-8 [36.8 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main arm64 libuchardet0 arm64 0.0.7-1build2 [77.3 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main arm64 groff-base arm64 1.22.4-8build1 [917 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpipeline1 arm64 1.5.6-2 [23.3 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main arm64 man-db arm64 2.10.2-2 [1175 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main arm64 m4 arm64 1.4.19-1 [240 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main arm64 autoconf all 2.71-2 [338 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main arm64 autopoint all 0.21-8 [421 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/universe arm64 cython3 arm64 0.29.30-1ubuntu1 [1284 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdebhelper-perl all 13.9.1ubuntu1 [66.4 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main arm64 libtool all 2.4.7-4 [166 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main arm64 dh-autoreconf all 20 [16.1 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main arm64 libsub-override-perl all 0.09-3 [9756 B] Get:36 http://ftpmaster.internal/ubuntu kinetic/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main arm64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:38 http://ftpmaster.internal/ubuntu kinetic/main arm64 libdw1 arm64 0.187-2 [243 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main arm64 dwz arm64 0.14-1build2 [102 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main arm64 gettext arm64 0.21-8 [842 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main arm64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main arm64 debhelper all 13.9.1ubuntu1 [939 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-lib2to3 all 3.10.7-1 [77.5 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-distutils all 3.10.7-1 [139 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/universe arm64 dh-python all 5.20220819 [106 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main arm64 libblas3 arm64 3.10.1-2 [140 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main arm64 libexpat1-dev arm64 2.4.8-2 [123 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main arm64 libgfortran5 arm64 12.2.0-2ubuntu1 [417 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjs-underscore all 1.13.3~dfsg+~1.11.4-1 [118 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main arm64 libjs-sphinxdoc all 4.5.0-4 [142 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblapack3 arm64 3.10.1-2 [1997 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main arm64 liblzo2-2 arm64 2.10-2build3 [51.4 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10 arm64 3.10.7-1 [1880 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-4.1ubuntu1 [162 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3.10-dev arm64 3.10.7-1 [4406 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3-dev arm64 3.10.6-1 [7096 B] Get:60 http://ftpmaster.internal/ubuntu kinetic/main arm64 libpython3-all-dev arm64 3.10.6-1 [920 B] Get:61 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-all arm64 3.10.6-1 [898 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3.10-dev arm64 3.10.7-1 [507 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-dev arm64 3.10.6-1 [26.0 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-all-dev arm64 3.10.6-1 [912 B] Get:65 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-attr all 22.1.0-1 [48.5 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] Get:67 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-lzo arm64 1.14-1 [7994 B] Get:68 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-more-itertools all 8.10.0-2 [47.9 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-numpy arm64 1:1.21.5-1build2 [4107 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-pyparsing all 3.0.7-2 [82.6 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-packaging all 21.3-1.1 [30.6 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-pluggy all 1.0.0+repack-1 [15.1 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-py all 1.10.0-1 [71.9 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-tomli all 2.0.1-1 [16.6 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-pytest all 7.1.2-2ubuntu1 [219 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/universe arm64 python3-pytest-cython all 0.1.1-1 [7502 B] Get:77 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-setuptools all 59.6.0-1.2 [339 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main arm64 python3-six all 1.16.0-4 [12.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.7 MB in 5s (7855 kB/s) Selecting previously unselected package libpython3.10-minimal:arm64. (Reading database ... 13604 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.7-1_arm64.deb ... Unpacking libpython3.10-minimal:arm64 (3.10.7-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.4.8-2_arm64.deb ... Unpacking libexpat1:arm64 (2.4.8-2) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.7-1_arm64.deb ... Unpacking python3.10-minimal (3.10.7-1) ... Setting up libpython3.10-minimal:arm64 (3.10.7-1) ... Setting up libexpat1:arm64 (2.4.8-2) ... Setting up python3.10-minimal (3.10.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13906 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1_arm64.deb ... Unpacking python3-minimal (3.10.6-1) ... Selecting previously unselected package media-types. 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Setting up libblas3:arm64 (3.10.1-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.4.8-2) ... Setting up autopoint (0.21-8) ... Setting up libgfortran5:arm64 (12.2.0-2ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up libuchardet0:arm64 (0.0.7-1build2) ... Setting up libmpdec3:arm64 (2.5.1-2build2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up libelf1:arm64 (0.187-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1) ... Setting up libjs-underscore (1.13.3~dfsg+~1.11.4-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... 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Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-six (1.16.0-4) ... Setting up python3-pyparsing (3.0.7-2) ... Setting up cython3 (0.29.30-1ubuntu1) ... Setting up libpython3.10-dev:arm64 (3.10.7-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3.10-dev (3.10.7-1) ... Setting up python3-lib2to3 (3.10.7-1) ... Setting up python3-lzo:arm64 (1.14-1) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.10.7-1) ... Setting up dh-python (5.20220819) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.1.0-1) ... Setting up libpython3-dev:arm64 (3.10.6-1) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up python3-tomli (2.0.1-1) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.10.6-1) ... Setting up debhelper (13.9.1ubuntu1) ... Setting up python3-packaging (21.3-1.1) ... Setting up libpython3-all-dev:arm64 (3.10.6-1) ... Setting up python3-dev (3.10.6-1) ... Setting up python3-numpy (1:1.21.5-1build2) ... Setting up python3-all-dev (3.10.6-1) ... Setting up python3-pytest (7.1.2-2ubuntu1) ... Setting up python3-pytest-cython (0.1.1-1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-125-generic #141-Ubuntu SMP Wed Aug 10 14:03:41 UTC 2022 arm64 (aarch64) Toolchain package versions: binutils_2.39-1ubuntu1 dpkg-dev_1.21.9ubuntu1 g++-12_12.2.0-2ubuntu1 gcc-12_12.2.0-2ubuntu1 libc6-dev_2.36-0ubuntu2 libstdc++-12-dev_12.2.0-2ubuntu1 libstdc++6_12.2.0-2ubuntu1 linux-libc-dev_5.19.0-15.15 Package versions: adduser_3.121ubuntu1 advancecomp_2.3-1 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-8 autotools-dev_20220109.1 base-files_12.2ubuntu2 base-passwd_3.6.0 bash_5.2~rc2-2ubuntu1 binutils_2.39-1ubuntu1 binutils-aarch64-linux-gnu_2.39-1ubuntu1 binutils-common_2.39-1ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-2ubuntu1 cython3_0.29.30-1ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.9.1ubuntu1 debianutils_5.7-0.3 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_5.20220819 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dpkg_1.21.9ubuntu1 dpkg-dev_1.21.9ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-2ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-2ubuntu1 gcc-12-base_12.2.0-2ubuntu1 gettext_0.21-8 gettext-base_0.21-8 gpg_2.2.35-3ubuntu1 gpg-agent_2.2.35-3ubuntu1 gpgconf_2.2.35-3ubuntu1 gpgv_2.2.35-3ubuntu1 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.12-1ubuntu1 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pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 python3_3.10.6-1 python3-all_3.10.6-1 python3-all-dev_3.10.6-1 python3-attr_22.1.0-1 python3-dev_3.10.6-1 python3-distutils_3.10.7-1 python3-iniconfig_1.1.1-2 python3-lib2to3_3.10.7-1 python3-lzo_1.14-1 python3-minimal_3.10.6-1 python3-more-itertools_8.10.0-2 python3-numpy_1:1.21.5-1build2 python3-packaging_21.3-1.1 python3-pkg-resources_59.6.0-1.2 python3-pluggy_1.0.0+repack-1 python3-py_1.10.0-1 python3-pyparsing_3.0.7-2 python3-pytest_7.1.2-2ubuntu1 python3-pytest-cython_0.1.1-1 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-4 python3-tomli_2.0.1-1 python3.10_3.10.7-1 python3.10-dev_3.10.7-1 python3.10-minimal_3.10.7-1 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 sgml-base_1.30 systemd_251.4-1ubuntu4 systemd-sysv_251.4-1ubuntu4 sysvinit-utils_3.04-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022c-1ubuntu3 ubuntu-keyring_2021.03.26 usrmerge_29ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1ubuntu1 zlib1g-dev_1:1.2.11.dfsg-4.1ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-bx Binary: python3-bx Architecture: any Version: 0.8.13-1build1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Michael R. Crusoe Homepage: https://github.com/bxlab/bx-python Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/python-bx Vcs-Git: https://salsa.debian.org/med-team/python-bx.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, python3-setuptools, python3-all-dev:any, python3-lzo, python3-pytest , python3-pytest-cython , python3-numpy , python3-six, cython3 Package-List: python3-bx deb python optional arch=any Checksums-Sha1: 7275df034e7b3902f0ae9acf458f205e4955b53c 1664878 python-bx_0.8.13.orig.tar.gz ea31ca3ac8f3d203c71d9a30338cad29a22531c3 12032 python-bx_0.8.13-1build1.debian.tar.xz Checksums-Sha256: 38597646e52ae183a03a598759ce152af91199a32c5a82c3be2b0f7ead0e1880 1664878 python-bx_0.8.13.orig.tar.gz 13644b1ce63d01812ce3850fef5b08aa203f25471f028608326ddb168dcdfbe8 12032 python-bx_0.8.13-1build1.debian.tar.xz Files: 0d51d10f8ab8cb0ac1ba65a4797fa387 1664878 python-bx_0.8.13.orig.tar.gz f722e211e7f5d3298e64712410c3328f 12032 python-bx_0.8.13-1build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAmIybH8ACgkQr8/sjmac 4cL4khAApby6bFinwVnDnb/eCm9lvhv3V6OLwo//Zy938y2I7k8FE4luLqs07x2u 1aqM5aO1ghsg2RYlpDivyRwaoz/jCLHekieNIOGvJXnM3wiT0NypI8SAiGwPlMfy sKFj+6pEL8IozIT/8UoRaB2UHw3Svb7OZQkUvngyuVecBld9caafy1Y/D+CuXJZV KOYowezgErow67TLkNf758BxPg7BbgLoIe2wnEBgv5OMtEgaN1oMurN7NqNr6wn4 +pnliLzuPzpat5ZwOQ9p/kV+AeTux+Etu2bWjXcBJ9uKttAGAM2uoNKkmjP5kmOR Ucq17FAln0gjAbQa85KW6RCrqqSrsmgrMUdKlbQ77ow8p5X91UytmypOcS3kwvTk SmPNcGvH38+Ja0fwXpF2Xb9CZxhf4Aw7QJsCxmwt9B0zzXF+AzfDqN9o9FepSUu7 mdpbH649I3VRmRjJTaFzFf0UAj3BG15gqbUsYEHJ55FnTqxiMEYoXZ8PkKvitVsi TT59TNWZ7zwCZDK9lxLjz65Dzgb4T09+8Dj4mQ2LcYV0Uo5rx0wnUiVOT5/7yLbm HHfC7EhHcqfwrkwk6sIBT1eTxvzwWv5K+n4+QFt6juFKkDh4hLxXhGiNgzXrAYX7 2kUnaPtwLtDaRSeHxZ0n7c9FRt2ocx14P2HrBzKXlpqmKczZU4s= =eLju -----END PGP SIGNATURE----- gpgv: Signature made Wed Mar 16 23:02:23 2022 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./python-bx_0.8.13-1build1.dsc dpkg-source: info: extracting python-bx in /<> dpkg-source: info: unpacking python-bx_0.8.13.orig.tar.gz dpkg-source: info: unpacking python-bx_0.8.13-1build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying shebang.patch dpkg-source: info: applying fix_BIN_OFFSETS_MAX Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24439344 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24439344 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24439344 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package python-bx dpkg-buildpackage: info: source version 0.8.13-1build1 dpkg-buildpackage: info: source distribution jammy dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean I: pybuild base:240: python3.10 setup.py clean /<>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import Command running clean removing '/<>/.pybuild/cpython3_3.10_bx-python/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.10' does not exist -- can't clean it find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f grep -rli "Generated by Cython" lib/ | xargs -r rm rm -rf lib/bx_python.egg-info make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:240: python3.10 setup.py config /<>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import Command running config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /<>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import Command running build running build_py copying lib/psyco_full.py -> /<>/.pybuild/cpython3_3.10_bx-python/build creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/wiggle_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/filter.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/binned_array.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/bitset_builders.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/seqmapping_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/interval_index_file_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/seqmapping.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/bitset_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/bitset_utils.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/wiggle.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/interval_index_file.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/gene_reader.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx copying lib/bx/binned_array_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras copying lib/bx_extras/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras copying lib/bx_extras/lrucache.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras copying lib/bx_extras/pstat.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras copying lib/bx_extras/fpconst.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras copying lib/bx_extras/stats.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras copying lib/bx_extras/fpconst_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras copying lib/bx_extras/pyparsing.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals copying lib/bx/intervals/intersection_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals copying lib/bx/intervals/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals copying lib/bx/intervals/cluster_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals copying lib/bx/intervals/random_intervals.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals copying lib/bx/intervals/io.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/tabular copying lib/bx/tabular/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/tabular copying lib/bx/tabular/io.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/tabular creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook copying lib/bx/cookbook/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook copying lib/bx/cookbook/progress_bar.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook copying lib/bx/cookbook/argparse.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook copying lib/bx/cookbook/attribute.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif copying lib/bx/motif/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif copying lib/bx/motif/pwm_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif copying lib/bx/motif/pwm.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/seeklzop_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/cdb_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/cdb.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/binary_file.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/seeklzop.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/readlengths.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/filecache.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/bgzf_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc copying lib/bx/misc/filecache_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo copying lib/bx/phylo/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo copying lib/bx/phylo/phast.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo copying lib/bx/phylo/newick_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo copying lib/bx/phylo/newick.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo copying lib/bx/phylo/phast_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/score.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/core.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/epo_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/lav_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/maf.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/lav.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/axt.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/epo.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/score_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align copying lib/bx/align/maf_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays copying lib/bx/arrays/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/fasta.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/twobit.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/core.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/twobit_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/qdna_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/nib.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/seq.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/fasta_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/qdna.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/seq_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq copying lib/bx/seq/nib_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intseq copying lib/bx/intseq/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intseq creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi copying lib/bx/bbi/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io copying lib/bx/motif/io/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/logo creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools copying lib/bx/align/tools/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools copying lib/bx/align/tools/thread.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools copying lib/bx/align/tools/fuse.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools copying lib/bx/align/tools/chop.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools copying lib/bx/align/tools/tile.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools creating /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask copying lib/bx/motif/logo/template.ps -> /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/logo running build_ext cythoning lib/bx/bitset.pyx to lib/bx/bitset.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/bitset.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/intersection.pyx to lib/bx/intervals/intersection.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/intervals/intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_core.pyx to lib/bx/align/_core.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/align/_core.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_nib.pyx to lib/bx/seq/_nib.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/seq/_nib.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_twobit.pyx to lib/bx/seq/_twobit.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/seq/_twobit.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/_seqmapping.pyx to lib/bx/_seqmapping.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/_seqmapping.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/bgzf.pyx to lib/bx/misc/bgzf.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/misc/bgzf.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/cluster.pyx to lib/bx/intervals/cluster.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/intervals/cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/pwm/_position_weight_matrix.pyx to lib/bx/pwm/_position_weight_matrix.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/pwm/_position_weight_matrix.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/motif/_pwm.pyx to lib/bx/motif/_pwm.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/motif/_pwm.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/array_tree.pyx to lib/bx/arrays/array_tree.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/arrays/array_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bpt_file.pyx to lib/bx/bbi/bpt_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/bbi/bpt_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/cirtree_file.pyx to lib/bx/bbi/cirtree_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/bbi/cirtree_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bbi_file.pyx to lib/bx/bbi/bbi_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/bbi/bbi_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigwig_file.pyx to lib/bx/bbi/bigwig_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/bbi/bigwig_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigbed_file.pyx to lib/bx/bbi/bigbed_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/bbi/bigbed_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_epo.pyx to lib/bx/align/_epo.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/align/_epo.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/bed.pyx to lib/bx/arrays/bed.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/arrays/bed.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/wiggle.pyx to lib/bx/arrays/wiggle.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/arrays/wiggle.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code cythoning lib/bx/align/sitemask/_cpg.pyx to lib/bx/align/sitemask/_cpg.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/align/sitemask/_cpg.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intseq/ngramcount.pyx to lib/bx/intseq/ngramcount.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/intseq/ngramcount.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/_seekbzip2.pyx to lib/bx/misc/_seekbzip2.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /<>/lib/bx/misc/_seekbzip2.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bitset' extension creating build creating build/temp.linux-arm64-3.10 creating build/temp.linux-arm64-3.10/lib creating build/temp.linux-arm64-3.10/lib/bx creating build/temp.linux-arm64-3.10/src creating build/temp.linux-arm64-3.10/src/kent aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.10 -c lib/bx/bitset.c -o build/temp.linux-arm64-3.10/lib/bx/bitset.o aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.10 -c src/binBits.c -o build/temp.linux-arm64-3.10/src/binBits.o aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.10 -c src/kent/bits.c -o build/temp.linux-arm64-3.10/src/kent/bits.o src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; | ^~~~~ aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.10 -c src/kent/common.c -o build/temp.linux-arm64-3.10/src/kent/common.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/bitset.o build/temp.linux-arm64-3.10/src/binBits.o build/temp.linux-arm64-3.10/src/kent/bits.o build/temp.linux-arm64-3.10/src/kent/common.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bitset.cpython-310-aarch64-linux-gnu.so building 'bx.intervals.intersection' extension creating build/temp.linux-arm64-3.10/lib/bx/intervals aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/intervals/intersection.c -o build/temp.linux-arm64-3.10/lib/bx/intervals/intersection.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/intervals/intersection.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/intersection.cpython-310-aarch64-linux-gnu.so building 'bx.align._core' extension creating build/temp.linux-arm64-3.10/lib/bx/align aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/align/_core.c -o build/temp.linux-arm64-3.10/lib/bx/align/_core.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/align/_core.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/_core.cpython-310-aarch64-linux-gnu.so building 'bx.seq._nib' extension creating build/temp.linux-arm64-3.10/lib/bx/seq aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/seq/_nib.c -o build/temp.linux-arm64-3.10/lib/bx/seq/_nib.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/seq/_nib.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/_nib.cpython-310-aarch64-linux-gnu.so building 'bx.seq._twobit' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/seq/_twobit.c -o build/temp.linux-arm64-3.10/lib/bx/seq/_twobit.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/seq/_twobit.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/_twobit.cpython-310-aarch64-linux-gnu.so building 'bx._seqmapping' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/_seqmapping.c -o build/temp.linux-arm64-3.10/lib/bx/_seqmapping.o lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate’: lib/bx/_seqmapping.c:1899:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 1899 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 52, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.10/genobject.h:12, from /usr/include/python3.10/Python.h:110, from lib/bx/_seqmapping.c:6: /usr/include/python3.10/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list’: lib/bx/_seqmapping.c:2102:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 2102 | __pyx_t_7 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 75, __pyx_L1_error) | ^~~~~~~~~ /usr/include/python3.10/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate’: lib/bx/_seqmapping.c:3177:3: warning: ‘PyObject_AsReadBuffer’ is deprecated [-Wdeprecated-declarations] 3177 | __pyx_t_1 = PyObject_AsReadBuffer(__pyx_v_src, ((void const **)(&__pyx_v_s_buf)), (&__pyx_v_s_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 132, __pyx_L1_error) | ^~~~~~~~~ /usr/include/python3.10/abstract.h:343:17: note: declared here 343 | PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c:3278:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 3278 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 137, __pyx_L1_error) | ^~~~~~~~~ /usr/include/python3.10/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’, inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:2812:13, inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:5091:7: lib/bx/_seqmapping.c:2846:33: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2846 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int))))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.10/Python.h:34: /usr/include/stdlib.h: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’: /usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here 553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/_seqmapping.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/_seqmapping.cpython-310-aarch64-linux-gnu.so In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping___cinit__’, inlined from ‘__pyx_pw_2bx_11_seqmapping_15IntToIntMapping_1__cinit__’ at lib/bx/_seqmapping.c:2812:13, inlined from ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’ at lib/bx/_seqmapping.c:5091:7: lib/bx/_seqmapping.c:2846:33: warning: argument 1 value ‘18446744073709551612’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 2846 | __pyx_v_self->table = ((int *)malloc((__pyx_v_in_size * (sizeof(int))))); | ^ /usr/include/stdlib.h: In function ‘__pyx_tp_new_2bx_11_seqmapping_IntToIntMapping’: /usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here 553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__ | ^ building 'bx.misc.bgzf' extension creating build/temp.linux-arm64-3.10/lib/bx/misc creating build/temp.linux-arm64-3.10/src/samtools aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.10 -c lib/bx/misc/bgzf.c -o build/temp.linux-arm64-3.10/lib/bx/misc/bgzf.o aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.10 -c src/samtools/bgzf.c -o build/temp.linux-arm64-3.10/src/samtools/bgzf.o src/samtools/bgzf.c: In function ‘cache_block’: src/samtools/bgzf.c:422:47: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) { | ^ src/samtools/bgzf.c: In function ‘read_block’: src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 462 | if (count != sizeof(header)) { | ^~ src/samtools/bgzf.c: In function ‘bgzf_close’: src/samtools/bgzf.c:603:29: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 603 | int count, block_length = deflate_block(fp, 0); | ^~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/misc/bgzf.o build/temp.linux-arm64-3.10/src/samtools/bgzf.o -lz -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/bgzf.cpython-310-aarch64-linux-gnu.so building 'bx.intervals.cluster' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.10 -c lib/bx/intervals/cluster.c -o build/temp.linux-arm64-3.10/lib/bx/intervals/cluster.o aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.10 -c src/cluster.c -o build/temp.linux-arm64-3.10/src/cluster.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/intervals/cluster.o build/temp.linux-arm64-3.10/src/cluster.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/cluster.cpython-310-aarch64-linux-gnu.so building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-arm64-3.10/lib/bx/pwm aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.10 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-arm64-3.10/lib/bx/pwm/_position_weight_matrix.o aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.10 -c src/pwm_utils.c -o build/temp.linux-arm64-3.10/src/pwm_utils.o src/pwm_utils.c: In function ‘main’: src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] 11 | int string_size = strlen(argv[1]); | ^~~~~~ src/pwm_utils.c:5:1: note: include ‘’ or provide a declaration of ‘strlen’ 4 | #include +++ |+#include 5 | src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ [-Wbuiltin-declaration-mismatch] 11 | int string_size = strlen(argv[1]); | ^~~~~~ src/pwm_utils.c:11:27: note: include ‘’ or provide a declaration of ‘strlen’ src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 12 | if (strlen(argv[2]) != string_size) { | ^~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-arm64-3.10/src/pwm_utils.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/_position_weight_matrix.cpython-310-aarch64-linux-gnu.so building 'bx.motif._pwm' extension creating build/temp.linux-arm64-3.10/lib/bx/motif aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c lib/bx/motif/_pwm.c -o build/temp.linux-arm64-3.10/lib/bx/motif/_pwm.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:696: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1464 | _import_array(void) | ^~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/motif/_pwm.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/_pwm.cpython-310-aarch64-linux-gnu.so building 'bx.arrays.array_tree' extension creating build/temp.linux-arm64-3.10/lib/bx/arrays aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c lib/bx/arrays/array_tree.c -o build/temp.linux-arm64-3.10/lib/bx/arrays/array_tree.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/arrays/array_tree.c:698: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/arrays/array_tree.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/array_tree.cpython-310-aarch64-linux-gnu.so building 'bx.bbi.bpt_file' extension creating build/temp.linux-arm64-3.10/lib/bx/bbi aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-arm64-3.10/lib/bx/bbi/bpt_file.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/bbi/bpt_file.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bpt_file.cpython-310-aarch64-linux-gnu.so building 'bx.bbi.cirtree_file' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-arm64-3.10/lib/bx/bbi/cirtree_file.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/bbi/cirtree_file.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/cirtree_file.cpython-310-aarch64-linux-gnu.so building 'bx.bbi.bbi_file' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-arm64-3.10/lib/bx/bbi/bbi_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bbi_file.c:698: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/bbi/bbi_file.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bbi_file.cpython-310-aarch64-linux-gnu.so building 'bx.bbi.bigwig_file' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-arm64-3.10/lib/bx/bbi/bigwig_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigwig_file.c:698: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3398:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3398 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ^ lib/bx/bbi/bigwig_file.c:3427:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3427 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’: lib/bx/bbi/bigwig_file.c:5351:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 5351 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) { | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3484:18: warning: ‘__pyx_v_val’ may be used uninitialized [-Wmaybe-uninitialized] 3484 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:2839:9: note: ‘__pyx_v_val’ was declared here 2839 | float __pyx_v_val; | ^~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:3427:51: warning: ‘__pyx_v_e’ may be used uninitialized [-Wmaybe-uninitialized] 3427 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ lib/bx/bbi/bigwig_file.c:2838:7: note: ‘__pyx_v_e’ was declared here 2838 | int __pyx_v_e; | ^~~~~~~~~ lib/bx/bbi/bigwig_file.c:3398:53: warning: ‘__pyx_v_s’ may be used uninitialized [-Wmaybe-uninitialized] 3398 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ lib/bx/bbi/bigwig_file.c:2837:7: note: ‘__pyx_v_s’ was declared here 2837 | int __pyx_v_s; | ^~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/bbi/bigwig_file.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigwig_file.cpython-310-aarch64-linux-gnu.so building 'bx.bbi.bigbed_file' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-arm64-3.10/lib/bx/bbi/bigbed_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigbed_file.c:698: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/bbi/bigbed_file.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigbed_file.cpython-310-aarch64-linux-gnu.so building 'bx.align._epo' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.10 -c lib/bx/align/_epo.c -o build/temp.linux-arm64-3.10/lib/bx/align/_epo.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/align/_epo.c:698: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’: lib/bx/align/_epo.c:5495:237: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘long int’} [-Wsign-compare] 5495 | __pyx_t_4 = (((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_11, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_12, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen) != 0); | ^~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/align/_epo.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/_epo.cpython-310-aarch64-linux-gnu.so building 'bx.arrays.bed' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/arrays/bed.c -o build/temp.linux-arm64-3.10/lib/bx/arrays/bed.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/arrays/bed.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/bed.cpython-310-aarch64-linux-gnu.so building 'bx.arrays.wiggle' extension aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/arrays/wiggle.c -o build/temp.linux-arm64-3.10/lib/bx/arrays/wiggle.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/arrays/wiggle.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/wiggle.cpython-310-aarch64-linux-gnu.so building 'bx.align.sitemask._cpg' extension creating build/temp.linux-arm64-3.10/lib/bx/align/sitemask aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-arm64-3.10/lib/bx/align/sitemask/_cpg.o aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.10 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-arm64-3.10/lib/bx/align/sitemask/find_cpg.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/align/sitemask/_cpg.o build/temp.linux-arm64-3.10/lib/bx/align/sitemask/find_cpg.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/_cpg.cpython-310-aarch64-linux-gnu.so building 'bx.intseq.ngramcount' extension creating build/temp.linux-arm64-3.10/lib/bx/intseq aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.10 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-arm64-3.10/lib/bx/intseq/ngramcount.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/intseq/ngramcount.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intseq/ngramcount.cpython-310-aarch64-linux-gnu.so building 'bx.misc._seekbzip2' extension creating build/temp.linux-arm64-3.10/src/bunzip aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.10 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-arm64-3.10/lib/bx/misc/_seekbzip2.o aarch64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.10 -c src/bunzip/micro-bunzip.c -o build/temp.linux-arm64-3.10/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c: In function ‘get_next_block’: src/bunzip/micro-bunzip.c:151:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 151 | if((origPtr=get_bits(bd,24)) > dbufSize) return RETVAL_DATA_ERROR; | ^ src/bunzip/micro-bunzip.c:298:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 298 | while (bd->inbufBitCountmaxLen) { | ^ src/bunzip/micro-bunzip.c:400:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR; | ^~ src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: src/bunzip/micro-bunzip.c:629:26: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 629 | bd->inbuf=inbuf; | ^ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-3.10/lib/bx/misc/_seekbzip2.o build/temp.linux-arm64-3.10/src/bunzip/micro-bunzip.o -o /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/_seekbzip2.cpython-310-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.10 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.10 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.10 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.10 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.10 copying and adjusting scripts/random_lines.py -> build/scripts-3.10 copying and adjusting scripts/mask_quality.py -> build/scripts-3.10 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.10 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.10 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.10 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.10 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.10 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.10 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.10 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.10 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.10 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.10 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.10 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.10 copying and adjusting scripts/table_filter.py -> build/scripts-3.10 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.10 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.10 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.10 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.10 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.10 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.10 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.10 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.10 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.10 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.10 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.10 copying and adjusting scripts/align_print_template.py -> build/scripts-3.10 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.10 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.10 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.10 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.10 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.10 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.10 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.10 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.10 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.10 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.10 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.10 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.10 copying and adjusting scripts/interval_join.py -> build/scripts-3.10 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.10 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.10 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.10 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.10 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.10 copying and adjusting scripts/maf_count.py -> build/scripts-3.10 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.10 copying and adjusting scripts/maf_select.py -> build/scripts-3.10 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.10 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.10 copying and adjusting scripts/maf_filter.py -> build/scripts-3.10 copying and adjusting scripts/table_add_column.py -> build/scripts-3.10 copying and adjusting scripts/bed_complement.py -> build/scripts-3.10 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.10 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.10 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.10 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.10 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.10 copying and adjusting scripts/maf_chop.py -> build/scripts-3.10 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.10 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.10 copying and adjusting scripts/pretty_table.py -> build/scripts-3.10 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.10 copying and adjusting scripts/nib_length.py -> build/scripts-3.10 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.10 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.10 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.10 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.10 copying and adjusting scripts/line_select.py -> build/scripts-3.10 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.10 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.10 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.10 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.10 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.10 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.10 copying and adjusting scripts/bnMapper.py -> build/scripts-3.10 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.10 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.10 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.10 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.10 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.10 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.10 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.10 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.10 copying and adjusting scripts/maf_tile.py -> build/scripts-3.10 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.10 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.10 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.10 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.10 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.10 changing mode of build/scripts-3.10/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.10/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.10/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.10/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.10/random_lines.py from 644 to 755 changing mode of build/scripts-3.10/mask_quality.py from 644 to 755 changing mode of build/scripts-3.10/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.10/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.10/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.10/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.10/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.10/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.10/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.10/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.10/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.10/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.10/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.10/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.10/table_filter.py from 644 to 755 changing mode of build/scripts-3.10/maf_col_counts.py from 644 to 755 changing mode of build/scripts-3.10/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.10/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.10/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.10/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.10/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.10/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.10/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.10/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.10/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.10/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.10/align_print_template.py from 644 to 755 changing mode of build/scripts-3.10/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.10/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.10/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.10/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.10/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-3.10/gene_fourfold_sites.py from 644 to 755 changing mode of build/scripts-3.10/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.10/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.10/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.10/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.10/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.10/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.10/interval_join.py from 644 to 755 changing mode of build/scripts-3.10/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.10/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.10/maf_tile_2.py from 644 to 755 changing mode of build/scripts-3.10/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.10/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.10/maf_count.py from 644 to 755 changing mode of build/scripts-3.10/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.10/maf_select.py from 644 to 755 changing mode of build/scripts-3.10/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.10/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.10/maf_filter.py from 644 to 755 changing mode of build/scripts-3.10/table_add_column.py from 644 to 755 changing mode of build/scripts-3.10/bed_complement.py from 644 to 755 changing mode of build/scripts-3.10/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.10/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.10/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.10/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.10/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.10/maf_chop.py from 644 to 755 changing mode of build/scripts-3.10/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.10/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.10/pretty_table.py from 644 to 755 changing mode of build/scripts-3.10/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.10/nib_length.py from 644 to 755 changing mode of build/scripts-3.10/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.10/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.10/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.10/aggregate_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.10/line_select.py from 644 to 755 changing mode of build/scripts-3.10/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.10/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.10/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.10/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.10/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.10/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.10/bnMapper.py from 644 to 755 changing mode of build/scripts-3.10/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.10/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.10/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.10/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.10/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.10/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.10/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.10/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.10/maf_tile.py from 644 to 755 changing mode of build/scripts-3.10/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.10/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.10/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.10/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.10/bed_diff_basewise_summary.py from 644 to 755 dh_auto_test -a -O--buildsystem=pybuild I: pybuild pybuild:300: cp -r /<>/test_data /<>/.pybuild/cpython3_3.10_bx-python/build/ I: pybuild base:240: cd /<>/.pybuild/cpython3_3.10_bx-python/build; python3.10 -m pytest ============================= test session starts ============================== platform linux -- Python 3.10.7, pytest-7.1.2, pluggy-1.0.0+repack rootdir: /<>, configfile: pytest.ini plugins: cython-0.1.1 collected 139 items bx/binned_array_tests.py .... [ 2%] bx/bitset_tests.py .................. [ 15%] bx/interval_index_file_tests.py ... [ 17%] bx/wiggle_tests.py .. [ 19%] bx/align/epo_tests.py ..... [ 23%] bx/align/lav_tests.py . [ 23%] bx/align/maf_tests.py ........ [ 29%] bx/align/score_tests.py ..... [ 33%] bx/align/sitemask/sitemask_tests.py ... [ 35%] bx/align/tools/fuse.py . [ 35%] bx/align/tools/thread.py . [ 36%] bx/arrays/array_tree_tests.py ...... [ 41%] bx/bbi/bigwig_tests.py ........................... [ 60%] bx/intervals/cluster_tests.py ............. [ 69%] bx/intervals/intersection_tests.py ............. [ 79%] bx/intervals/io.py .. [ 80%] bx/misc/bgzf_tests.py . [ 81%] bx/misc/cdb_tests.py . [ 82%] bx/motif/pwm_tests.py ... [ 84%] bx/motif/io/transfac_tests.py . [ 84%] bx/phylo/newick_tests.py ........ [ 90%] bx/phylo/phast_tests.py . [ 91%] bx/pwm/pwm_tests.py . [ 92%] bx/seq/fasta_tests.py . [ 92%] bx/seq/nib_tests.py . [ 93%] bx/seq/qdna_tests.py . [ 94%] bx/seq/seq_tests.py .... [ 97%] bx/seq/twobit_tests.py ... [ 99%] bx_extras/fpconst_tests.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 12000 10 mean n/a n/a n/a n/a -0.164968 -0.194169 -0.0533029 0.00390226 -0.00226906 -0.0365958\n] .pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigwig_tests.py::TestBigWig::test_summary_from_file[chr1 10000 20000 100 mean n/a n/a n/a n/a n/a n/a n/a n/a n/a -0.163546 -0.272118 -0.127111 -0.116169 0.0202627 -0.0243522 0.0349913 -0.0054408 -0.00101548 -0.0307148 -0.0374406 -0.0024669 -0.034042 -0.0343892 -0.0199075 -0.0406878 -0.0322236 -0.080479 -0.235991 -0.0897865 -0.041593 0.019942 -0.0608448 0.0144338 -0.0348468 0.0195101 -0.0555526 -0.0892809 0.011672 -0.173894 -0.0849444 0.0718796 0.0608432 0.0313183 0.0439315 -0.0242363 0.03288 0.0318241 0.122005 0.0879138 0.00102565 0.0334753 -0.00263047 -0.103023 -0.0275437 0.0958326 0.0147229 -0.0629772 0.00541821 0.062474 0.069069 -0.0389339 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0.11689 0.11689 0.105882 0.094874 -0.80777 0.094874 0.105882 0.11689 0.094874 0.094874 0.094874 0.105882 0.094874 -0.928858 0.0838661 0.0728583 0.0948741 0.094874 0.11689 0.11689 0.105882 0.105882 -0.697695 0.094874 0.094874 0.105882 0.094874 0.105882 0.11689 -0.829788 0.094874 0.105882 -0.906843 0.105882 0.105882 0.105882 0.094874 0.105882 0.105882 0.094874 0.094874 0.11689 0.105882 0.105882 -0.829788 0.094874 0.105882 0.11689 -0.71971 0.105882 0.103756 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.835144 0.090622 0.090622 -0.901269 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 0.090622 -0.818609 0.090622 0.090622 0.090622\n] /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigwig_tests.py:72: RuntimeWarning: invalid value encountered in true_divide assert allclose(sd.sum_data / sd.valid_count, values) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 139 passed, 5 warnings in 7.04s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bx/ -a -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /<>/debian/python3-bx /<>/setup.py:5: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import Command running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/python3-bx/usr creating /<>/debian/python3-bx/usr/lib creating /<>/debian/python3-bx/usr/lib/python3.10 creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages copying /<>/.pybuild/cpython3_3.10_bx-python/build/psyco_full.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/__pycache__/psyco_full.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/__pycache__ creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/intersection_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/subtract.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/quicksect.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/coverage.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/find_clusters.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/merge.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/subtract.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/coverage.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/base_coverage.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/find_clusters.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/concat.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/quicksect.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/complement.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/join.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/intersect.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/merge.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/base_coverage.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/concat.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/complement.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/intersect.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/operations/join.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/__pycache__/intersection_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/__pycache__/cluster_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/__pycache__/io.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/__pycache__/random_intervals.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/cluster_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/intersection.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/random_intervals.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/cluster.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intervals/io.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/tabular/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/tabular/__pycache__/io.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/tabular/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/tabular/io.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/progress_bar.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/__pycache__/doc_optparse.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/__pycache__/attribute.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/__pycache__/progress_bar.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/__pycache__/argparse.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/doc_optparse.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/argparse.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/cookbook/attribute.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/wiggle_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/binned_array_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/bitset_utils.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/seqmapping.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/wiggle.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/interval_index_file.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/wiggle_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/gene_reader.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/interval_index_file_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/bitset_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/seqmapping_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/filter.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/binned_array.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/__pycache__/bitset_builders.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/filter.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/_seqmapping.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/binned_array.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/bed_score_aligned_string.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/position_weight_matrix.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/pwm_score_motifs.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/pwm_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/pwm_score_positions.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/pwm_score_maf.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/maf_select_motifs.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/bed_score_aligned_pwm.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/pwm_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/position_weight_matrix.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/bed_score_aligned_pwm.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/bed_score_aligned_string.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/pwm_score_maf.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/maf_select_motifs.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/pwm_score_motifs.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/pwm_score_positions.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/pwm/_position_weight_matrix.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/__pycache__/pwm.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/__pycache__/pwm_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/pwm_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/pwm.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io/__pycache__/transfac_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io/__pycache__/transfac.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io/transfac.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/io/transfac_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/_pwm.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/logo copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/logo/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/logo creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/logo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/logo/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/logo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/motif/logo/template.ps -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/logo copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bitset_builders.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/seeklzop_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/_seekbzip2.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/cdb_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/cdb.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/binary_file.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/seekbzip2_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/binary_file.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/readlengths.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/filecache.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/seekbzip2.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/cdb_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/filecache_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/seeklzop.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/bgzf_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/seeklzop_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/cdb.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/bgzf.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/seeklzop.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/seekbzip2_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/readlengths.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/filecache.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/seekbzip2.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/bgzf_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/misc/filecache_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/phast.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/__pycache__/phast.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/__pycache__/phast_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/__pycache__/newick_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/__pycache__/newick.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/newick_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/newick.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/phylo/phast_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seqmapping_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/score.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/__pycache__/fuse.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/__pycache__/tile.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/__pycache__/thread.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/__pycache__/chop.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/thread.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/fuse.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/chop.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/tools/tile.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/core.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/epo_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/lav_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/axt.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/maf_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/score_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/epo.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/lav.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/lav_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/score.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/core.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/epo_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/__pycache__/maf.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/_core.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/maf.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/lav.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/axt.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/epo.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/score_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/maf_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/core.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/__pycache__/cpg.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/__pycache__/quality.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/__pycache__/core.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/__pycache__/sitemask_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/cpg.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/sitemask_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/quality.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/sitemask/_cpg.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/align/_epo.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/array_tree_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/bed.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/array_tree.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/__pycache__/array_tree_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/arrays/wiggle.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/fasta.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/twobit.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/core.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/twobit_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/fasta.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/seq.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/fasta_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/qdna_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/qdna.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/nib.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/seq_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/core.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/nib_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/__pycache__/twobit.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/twobit_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/_nib.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/qdna_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/nib.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/seq.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/fasta_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/qdna.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/seq_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/_twobit.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seq/nib_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/interval_index_file_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/seqmapping.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bitset_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intseq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intseq/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intseq creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intseq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intseq/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intseq/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/intseq/ngramcount.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intseq copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bitset.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bitset_utils.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/wiggle.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/interval_index_file.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/gene_reader.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigwig_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigwig_file.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bigbed_file.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/__pycache__/bigwig_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/cirtree_file.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bbi_file.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/bbi/bpt_file.cpython-310-aarch64-linux-gnu.so -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx/binned_array_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/test.2bit -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/testMask.fa -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/testN.fa -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/testMask.2bit -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/test.fa -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/test2.fa -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/testN.2bit -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/test.qdna -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/seq_tests/test.nib -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/seq_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hpeaks.bed -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hg19_one_peak.mapped.bed -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hg19_one_peak.bed -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.out -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed4 -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hpeaks.mapped.nopeak2.bed4 -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hg19.mm9.rBest.chain.gz -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed12 -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/hg19.chrom.sizes -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/epo_tests/mm9.chrom.sizes -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/epo_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bbi_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/bbi_tests/test.regions -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bbi_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/bbi_tests/test.bw -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bbi_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/bbi_tests/test.expectation -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bbi_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/bbi_tests/make_expectation.sh -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bbi_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/bbi_tests/test.wig -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bbi_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bgzf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/bgzf_tests/test.txt.gz -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bgzf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/bgzf_tests/test.txt -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/bgzf_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.bz2t -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm10_chr12_slice.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe_onlymouse_cow_elephant.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/test_hg18.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/dcking_ghp074.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm10_chr12_slice2.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_only_mouse_rat.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe_one_selected.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_last_selected.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1000 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1000/000000000.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1000 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1000/intervals.txt -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1000 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/empty.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.index -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.lzot -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_no_index.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/hg18.bed -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.lzo -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_mm8_ind.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000007.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000006.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000002.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000004.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000000.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000003.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/intervals.txt -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000005.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/chunk1/000000001.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests/chunk1 copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny_mm8_ind.maf.index -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe.maf -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm10_chr12_lessspe.maf.index -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm10_chr12.bed -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/dcking_ghp074.bed -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.bz2 -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/maf_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/lav_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/lav_tests/apple_orange.lav -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/lav_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/lav_tests/orange.nib -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/lav_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/lav_tests/orange.fa -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/lav_tests copying /<>/.pybuild/cpython3_3.10_bx-python/build/test_data/lav_tests/apple.fa -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/test_data/lav_tests creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__init__.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras creating /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__pycache__/fpconst_tests.cpython-310-pytest-7.1.2.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__pycache__/stats.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__pycache__/pstat.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__pycache__/pyparsing.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__pycache__/fpconst.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__pycache__/lrucache.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/__pycache__/__init__.cpython-310.pyc -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__pycache__ copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/lrucache.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/pstat.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/fpconst.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/stats.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/fpconst_tests.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras copying /<>/.pybuild/cpython3_3.10_bx-python/build/bx_extras/pyparsing.py -> /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/psyco_full.py to psyco_full.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/intersection_tests.py to intersection_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/subtract.py to subtract.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/quicksect.py to quicksect.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/coverage.py to coverage.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/find_clusters.py to find_clusters.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/merge.py to merge.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/base_coverage.py to base_coverage.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/concat.py to concat.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/complement.py to complement.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/intersect.py to intersect.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/operations/join.py to join.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/cluster_tests.py to cluster_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/random_intervals.py to random_intervals.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intervals/io.py to io.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/tabular/io.py to io.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/progress_bar.py to progress_bar.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/doc_optparse.py to doc_optparse.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/argparse.py to argparse.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/cookbook/attribute.py to attribute.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/wiggle_tests.py to wiggle_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/filter.py to filter.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/binned_array.py to binned_array.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/pwm_tests.py to pwm_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/position_weight_matrix.py to position_weight_matrix.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/bed_score_aligned_pwm.py to bed_score_aligned_pwm.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/bed_score_aligned_string.py to bed_score_aligned_string.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/pwm_score_maf.py to pwm_score_maf.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/maf_select_motifs.py to maf_select_motifs.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/pwm_score_motifs.py to pwm_score_motifs.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/pwm/pwm_score_positions.py to pwm_score_positions.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/pwm_tests.py to pwm_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/pwm.py to pwm.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io/transfac.py to transfac.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/io/transfac_tests.py to transfac_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/motif/logo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bitset_builders.py to bitset_builders.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/seeklzop_tests.py to seeklzop_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/cdb_tests.py to cdb_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/cdb.py to cdb.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/binary_file.py to binary_file.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/seeklzop.py to seeklzop.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/seekbzip2_tests.py to seekbzip2_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/readlengths.py to readlengths.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/filecache.py to filecache.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/seekbzip2.py to seekbzip2.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/bgzf_tests.py to bgzf_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/misc/filecache_tests.py to filecache_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/phast.py to phast.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/newick_tests.py to newick_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/newick.py to newick.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/phylo/phast_tests.py to phast_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seqmapping_tests.py to seqmapping_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/score.py to score.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/thread.py to thread.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/fuse.py to fuse.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/chop.py to chop.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/tools/tile.py to tile.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/core.py to core.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/epo_tests.py to epo_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/lav_tests.py to lav_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/maf.py to maf.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/lav.py to lav.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/axt.py to axt.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/epo.py to epo.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/score_tests.py to score_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/maf_tests.py to maf_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/core.py to core.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/cpg.py to cpg.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/sitemask_tests.py to sitemask_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/align/sitemask/quality.py to quality.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays/array_tree_tests.py to array_tree_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/arrays/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/fasta.py to fasta.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/twobit.py to twobit.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/core.py to core.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/twobit_tests.py to twobit_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/qdna_tests.py to qdna_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/nib.py to nib.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/seq.py to seq.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/fasta_tests.py to fasta_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/qdna.py to qdna.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/seq_tests.py to seq_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seq/nib_tests.py to nib_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/interval_index_file_tests.py to interval_index_file_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/seqmapping.py to seqmapping.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bitset_tests.py to bitset_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/intseq/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bitset_utils.py to bitset_utils.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/wiggle.py to wiggle.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/interval_index_file.py to interval_index_file.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/gene_reader.py to gene_reader.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/bbi/bigwig_tests.py to bigwig_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx/binned_array_tests.py to binned_array_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/__init__.py to __init__.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/lrucache.py to lrucache.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/pstat.py to pstat.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/fpconst.py to fpconst.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/stats.py to stats.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/fpconst_tests.py to fpconst_tests.cpython-310.pyc byte-compiling /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_extras/pyparsing.py to pyparsing.cpython-310.pyc running install_egg_info running egg_info creating lib/bx_python.egg-info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to /<>/debian/python3-bx/usr/lib/python3.10/dist-packages/bx_python-0.8.13.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_build_windows.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_build_index.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/tfloc_summary.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/axt_to_fasta.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/random_lines.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/mask_quality.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_to_concat_fasta.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/wiggle_to_simple.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_col_counts_all.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_to_fasta.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_truncate.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/mMK_bitset.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_split_by_src.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_merge_overlapping.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_drop_overlapping.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/wiggle_to_array_tree.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_filter_max_wc.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_mask_cpg.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/table_filter.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_col_counts.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/axt_extract_ranges.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_tile_2bit.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/lav_to_axt.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_print_chroms.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_mean_length_ungapped_piece.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_gap_frequency.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_count_overlapping.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_region_coverage_by_src.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_intersect.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/axt_to_lav.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/align_print_template.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_subtract_basewise.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_bigwig_profile.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_intersect_basewise.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_rand_intersect.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/lzop_build_offset_table.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/gene_fourfold_sites.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/nib_chrom_intervals_to_fasta.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/one_field_per_line.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_percent_identity.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/axt_to_maf.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_extend_to.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/nib_intervals_to_fasta.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/interval_join.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_to_axt.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_coverage_by_interval.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_tile_2.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_gc_content.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_print_scores.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_count.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_thread_for_species.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_select.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/qv_to_bqv.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/wiggle_to_chr_binned_array.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_filter.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/table_add_column.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_complement.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/out_to_chain.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_covered_regions.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_count_by_interval.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_randomize.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_limit_to_species.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_chop.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/prefix_lines.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_species_in_all_files.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/pretty_table.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_extract_ranges.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/nib_length.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_percent_columns_matching.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_div_sites.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/lav_to_maf.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/aggregate_scores_in_intervals.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/line_select.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_covered_ranges.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_extract_ranges_indexed.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_chunk.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/div_snp_table_chr.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_to_int_seqs.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_word_frequency.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bnMapper.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/get_scores_in_intervals.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_mapping_word_frequency.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/find_in_sorted_file.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/interval_count_intersections.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/int_seqs_to_char_strings.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_coverage.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_translate_chars.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/wiggle_to_binned_array.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_tile.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/ucsc_gene_table_to_intervals.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_extract_chrom_ranges.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_shuffle_columns.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/maf_interval_alignibility.py -> /<>/debian/python3-bx/usr/bin copying build/scripts-3.10/bed_diff_basewise_summary.py -> /<>/debian/python3-bx/usr/bin changing mode of /<>/debian/python3-bx/usr/bin/bed_build_windows.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_build_index.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/tfloc_summary.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/axt_to_fasta.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/random_lines.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/mask_quality.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_to_concat_fasta.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/wiggle_to_simple.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_col_counts_all.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_to_fasta.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_truncate.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/mMK_bitset.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_split_by_src.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_merge_overlapping.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_drop_overlapping.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/wiggle_to_array_tree.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_filter_max_wc.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_mask_cpg.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/table_filter.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_col_counts.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/axt_extract_ranges.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_tile_2bit.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/lav_to_axt.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_print_chroms.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_gap_frequency.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_count_overlapping.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_region_coverage_by_src.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_intersect.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/axt_to_lav.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/align_print_template.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_subtract_basewise.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_bigwig_profile.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_intersect_basewise.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_rand_intersect.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/lzop_build_offset_table.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/gene_fourfold_sites.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/one_field_per_line.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_percent_identity.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/axt_to_maf.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_extend_to.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/nib_intervals_to_fasta.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/interval_join.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_to_axt.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_coverage_by_interval.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_tile_2.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_gc_content.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_print_scores.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_count.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_thread_for_species.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_select.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/qv_to_bqv.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_filter.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/table_add_column.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_complement.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/out_to_chain.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_covered_regions.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_count_by_interval.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_randomize.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_limit_to_species.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_chop.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/prefix_lines.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_species_in_all_files.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/pretty_table.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_extract_ranges.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/nib_length.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_percent_columns_matching.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_div_sites.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/lav_to_maf.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/line_select.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_covered_ranges.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_chunk.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/div_snp_table_chr.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_to_int_seqs.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_word_frequency.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bnMapper.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/get_scores_in_intervals.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_mapping_word_frequency.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/find_in_sorted_file.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/interval_count_intersections.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/int_seqs_to_char_strings.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_coverage.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_translate_chars.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/wiggle_to_binned_array.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_tile.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_shuffle_columns.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/maf_interval_alignibility.py to 755 changing mode of /<>/debian/python3-bx/usr/bin/bed_diff_basewise_summary.py to 755 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/<>' dh_python3 --shebang=/usr/bin/python3 I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_build_windows.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_build_index.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/tfloc_summary.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/random_lines.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/mask_quality.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_concat_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_simple.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts_all.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_truncate.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/mMK_bitset.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_split_by_src.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_merge_overlapping.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_drop_overlapping.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_array_tree.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_filter_max_wc.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_mask_cpg.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/table_filter.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_col_counts.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_extract_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2bit.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/lav_to_axt.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_print_chroms.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_gap_frequency.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_count_overlapping.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_region_coverage_by_src.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_intersect.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_lav.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/align_print_template.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_subtract_basewise.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_bigwig_profile.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_intersect_basewise.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_rand_intersect.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/lzop_build_offset_table.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/gene_fourfold_sites.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/one_field_per_line.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_percent_identity.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/axt_to_maf.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_extend_to.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/nib_intervals_to_fasta.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/interval_join.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_axt.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_coverage_by_interval.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_tile_2.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_gc_content.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_print_scores.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_count.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_thread_for_species.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_select.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/qv_to_bqv.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_filter.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/table_add_column.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_complement.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/out_to_chain.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_covered_regions.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_count_by_interval.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_randomize.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_limit_to_species.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_chop.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/prefix_lines.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_species_in_all_files.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/pretty_table.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/nib_length.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_percent_columns_matching.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_div_sites.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/lav_to_maf.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/line_select.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_covered_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_chunk.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/div_snp_table_chr.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_to_int_seqs.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_word_frequency.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bnMapper.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/get_scores_in_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_mapping_word_frequency.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/find_in_sorted_file.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/interval_count_intersections.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/int_seqs_to_char_strings.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_coverage.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_translate_chars.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/wiggle_to_binned_array.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_tile.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_shuffle_columns.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/maf_interval_alignibility.py I: dh_python3 tools:114: replacing shebang in debian/python3-bx/usr/bin/bed_diff_basewise_summary.py make[1]: Leaving directory '/<>' dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/_seqmapping.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 fd9a1eca01c1f5f7932a520f68feacbc7c914206 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/bitset.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 164ddaa52fcdffc95dcf7735bbf86e48ed140437 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 0212720f3b6edd2e6dda66c53392de95ad9ec6fa debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 589bff8b2b0d60fe1d84d4808da0b43c5563bca5 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 6627b6fa68326c8e077800bd90ec87aa7afe9921 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 2a99754071a69cf597b36caac48a431917f2b4e2 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 505a804fbb524411530305904f1b64074384f159 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 1f99ec800cb387565d4c09f0563940a87061dbaf debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/align/_core.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 ebfeb1f074e048b6bdc6a4f4f5e7488b7530f4e4 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/align/_epo.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 87610419f8ccbe82b9a316aa90b0edfdaca0dcbd debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 43d9da5343abcea3fa9da1cd69c666116884369e debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/arrays/bed.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 071a68dc4a61c373ded41f5d113d0ca886b1a047 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 d8224ad23336743732a36d757762a7257ad1fe18 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-310-aarch64-linux-gnu.so: 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debian/python3-bx/usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f21 5779ba29ee9847a4c1a15fd0a5eaeb7a08a9c682 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 c6c908ccdd36842451466f3906e2782940a34234 debugedit: debian/python3-bx/usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-310-aarch64-linux-gnu.so: Unknown DWARF DW_FORM_0x1f20 afbb391becf61a5ca83202d22c969d5fcb24aaff dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 pkgstriptranslations: processing python3-bx (in debian/python3-bx); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-bx/DEBIAN/control, package python3-bx, directory debian/python3-bx pkgstripfiles: Truncating usr/share/doc/python3-bx/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-bx ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-bx' in '../python3-bx_0.8.13-1build1_arm64.deb'. dpkg-genbuildinfo --build=any -O../python-bx_0.8.13-1build1_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../python-bx_0.8.13-1build1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-09-19T01:55:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ python-bx_0.8.13-1build1_arm64.changes: --------------------------------------- Format: 1.8 Date: Wed, 16 Mar 2022 23:02:23 +0000 Source: python-bx Binary: python3-bx Built-For-Profiles: noudeb Architecture: arm64 Version: 0.8.13-1build1 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: python3-bx - library to manage genomic data and its alignment Changes: python-bx (0.8.13-1build1) jammy; urgency=medium . * No-change rebuild with Python 3.10 only Checksums-Sha1: 498caa1feebc933c8fcaef5291485dfdcd4f1a0d 7496 python-bx_0.8.13-1build1_arm64.buildinfo 582263b9f9d1bcb5240566c6d1afe82937161421 1956378 python3-bx_0.8.13-1build1_arm64.deb Checksums-Sha256: 4a4a6bd9f97ed09a6c346f622c468f6e1ebf363afd09630dc9c976ab634001aa 7496 python-bx_0.8.13-1build1_arm64.buildinfo 1d676e6248ac4515887cece17c6d9f7875d1e419d54e0b244fcc0592bf3114a9 1956378 python3-bx_0.8.13-1build1_arm64.deb Files: 9910a2cad26b7193b19d2253b88be9f6 7496 python optional python-bx_0.8.13-1build1_arm64.buildinfo 124e7db660d2edb882cbcbc321a536e9 1956378 python optional python3-bx_0.8.13-1build1_arm64.deb /<>/python-bx_0.8.13-1build1_arm64.changes.new could not be renamed to /<>/python-bx_0.8.13-1build1_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: python-bx Binary: python3-bx Architecture: arm64 Version: 0.8.13-1build1 Checksums-Md5: 124e7db660d2edb882cbcbc321a536e9 1956378 python3-bx_0.8.13-1build1_arm64.deb Checksums-Sha1: 582263b9f9d1bcb5240566c6d1afe82937161421 1956378 python3-bx_0.8.13-1build1_arm64.deb Checksums-Sha256: 1d676e6248ac4515887cece17c6d9f7875d1e419d54e0b244fcc0592bf3114a9 1956378 python3-bx_0.8.13-1build1_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Mon, 19 Sep 2022 01:55:24 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.121ubuntu1), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-8), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu2), base-passwd (= 3.6.0), bash (= 5.2~rc2-2ubuntu1), binutils (= 2.39-1ubuntu1), binutils-aarch64-linux-gnu (= 2.39-1ubuntu1), binutils-common (= 2.39-1ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-2ubuntu1), cython3 (= 0.29.30-1ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.9.1ubuntu1), debianutils (= 5.7-0.3), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 5.20220819), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dpkg (= 1.21.9ubuntu1), dpkg-dev (= 1.21.9ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-2ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-2ubuntu1), gcc-12-base (= 12.2.0-2ubuntu1), gettext (= 0.21-8), gettext-base (= 0.21-8), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1ubuntu1), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan8 (= 12.2.0-2ubuntu1), libatomic1 (= 12.2.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.39-1ubuntu1), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu2), libc-dev-bin (= 2.36-0ubuntu2), libc6 (= 2.36-0ubuntu2), libc6-dev (= 2.36-0ubuntu2), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.2.0-2ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2ubuntu1), libctf-nobfd0 (= 2.39-1ubuntu1), libctf0 (= 2.39-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.9.1ubuntu1), libdevmapper1.02.1 (= 2:1.02.185-1ubuntu1), libdpkg-perl (= 1.21.9ubuntu1), libdw1 (= 0.187-2), libelf1 (= 0.187-2), libexpat1 (= 2.4.8-2), libexpat1-dev (= 2.4.8-2), libfdisk1 (= 2.38-4ubuntu1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-12-dev (= 12.2.0-2ubuntu1), libgcc-s1 (= 12.2.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 12.2.0-2ubuntu1), libgmp10 (= 2:6.2.1+dfsg1-1ubuntu2), libgomp1 (= 12.2.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.39-1ubuntu1), libgssapi-krb5-2 (= 1.20-1), libhwasan0 (= 12.2.0-2ubuntu1), libicu71 (= 71.1-3), libip4tc2 (= 1.8.7-1ubuntu6), libisl23 (= 0.25-1), libitm1 (= 12.2.0-2ubuntu1), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-sphinxdoc (= 4.5.0-4), libjs-underscore (= 1.13.3~dfsg+~1.11.4-1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3ubuntu1), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblapack3 (= 3.10.1-2), liblsan0 (= 12.2.0-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), liblzo2-2 (= 2.10-2build3), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.5.2-2ubuntu1), libpam-modules-bin (= 1.5.2-2ubuntu1), libpam-runtime (= 1.5.2-2ubuntu1), libpam0g (= 1.5.2-2ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5ubuntu1), libpipeline1 (= 1.5.6-2), libpython3-all-dev (= 3.10.6-1), libpython3-dev (= 3.10.6-1), libpython3-stdlib (= 3.10.6-1), libpython3.10 (= 3.10.7-1), libpython3.10-dev (= 3.10.7-1), libpython3.10-minimal (= 3.10.7-1), libpython3.10-stdlib (= 3.10.7-1), libreadline8 (= 8.2~rc2-2), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1), libsepol2 (= 3.4-2), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.39.2-1), libssl3 (= 3.0.5-2ubuntu1), libstdc++-12-dev (= 12.2.0-2ubuntu1), libstdc++6 (= 12.2.0-2ubuntu1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-1ubuntu4), libsystemd0 (= 251.4-1ubuntu4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan2 (= 12.2.0-2ubuntu1), libubsan1 (= 12.2.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 251.4-1ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-15.15), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.2ubuntu1), lto-disabled-list (= 35), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), mount (= 2.38-4ubuntu1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2ubuntu1), patch (= 2.7.6-7build2), perl (= 5.34.0-5ubuntu1), perl-base (= 5.34.0-5ubuntu1), perl-modules-5.34 (= 5.34.0-5ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.6-1), python3-all (= 3.10.6-1), python3-all-dev (= 3.10.6-1), python3-attr (= 22.1.0-1), python3-dev (= 3.10.6-1), python3-distutils (= 3.10.7-1), python3-iniconfig (= 1.1.1-2), python3-lib2to3 (= 3.10.7-1), python3-lzo (= 1.14-1), python3-minimal (= 3.10.6-1), python3-more-itertools (= 8.10.0-2), python3-numpy (= 1:1.21.5-1build2), python3-packaging (= 21.3-1.1), python3-pkg-resources (= 59.6.0-1.2), python3-pluggy (= 1.0.0+repack-1), python3-py (= 1.10.0-1), python3-pyparsing (= 3.0.7-2), python3-pytest (= 7.1.2-2ubuntu1), python3-pytest-cython (= 0.1.1-1), python3-setuptools (= 59.6.0-1.2), python3-six (= 1.16.0-4), python3-tomli (= 2.0.1-1), python3.10 (= 3.10.7-1), python3.10-dev (= 3.10.7-1), python3.10-minimal (= 3.10.7-1), readline-common (= 8.2~rc2-2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), systemd (= 251.4-1ubuntu4), sysvinit-utils (= 3.04-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1ubuntu1), zlib1g-dev (= 1:1.2.11.dfsg-4.1ubuntu1) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1647471743" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-bx_0.8.13-1build1_arm64.deb ----------------------------------- new Debian package, version 2.0. size 1956378 bytes: control archive=9332 bytes. 1593 bytes, 30 lines control 26249 bytes, 307 lines md5sums 267 bytes, 12 lines * postinst #!/bin/sh 380 bytes, 12 lines * prerm #!/bin/sh Package: python3-bx Source: python-bx Version: 0.8.13-1build1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5213 Depends: python3-lzo, libc6 (>= 2.17), zlib1g (>= 1:1.1.4), python3 (<< 3.11), python3 (>= 3.10~), python3-numpy, python3:any Breaks: python3-bx-tools Replaces: python3-bx-tools Provides: python3-bx-tools Section: python Priority: optional Homepage: https://github.com/bxlab/bx-python Description: library to manage genomic data and its alignment The bx-python project is a Python3 library and associated set of scripts to allow for rapid implementation of genome scale analyses. The library contains a variety of useful modules, but the particular strengths are: * Classes for reading and working with genome-scale multiple local alignments (in MAF, AXT, and LAV formats) * Generic data structure for indexing on disk files that contain blocks of data associated with intervals on various sequences (used, for example, to provide random access to individual alignments in huge files; optimized for use over network filesystems) * Data structures for working with intervals on sequences * "Binned bitsets" which act just like chromosome sized bit arrays, but lazily allocate regions and allow large blocks of all set or all unset bits to be stored compactly * "Intersecter" for performing fast intersection tests that preserve both query and target intervals and associated annotation drwxr-xr-x root/root 0 2022-03-16 23:02 ./ drwxr-xr-x root/root 0 2022-03-16 23:02 ./usr/ drwxr-xr-x root/root 0 2022-03-16 23:02 ./usr/bin/ -rwxr-xr-x root/root 4081 2022-03-16 23:02 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./usr/share/lintian/overrides/python3-bx +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 59128 Build-Time: 113 Distribution: kinetic Host Architecture: arm64 Install-Time: 21 Job: python-bx_0.8.13-1build1.dsc Machine Architecture: arm64 Package: python-bx Package-Time: 135 Source-Version: 0.8.13-1build1 Space: 59128 Status: successful Version: 0.8.13-1build1 -------------------------------------------------------------------------------- Finished at 2022-09-19T01:55:24Z Build needed 00:02:15, 59128k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=arm64 PACKAGEBUILD-24439344 Scanning for processes to kill in build PACKAGEBUILD-24439344