https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24076597 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-041 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 18:29:45 ntpdate[1820]: adjust time server 10.211.37.1 offset 0.000019 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076597 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24076597 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076597 Starting target for build PACKAGEBUILD-24076597 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076597 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24076597 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076597 Adding trusted keys to build-PACKAGEBUILD-24076597 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076597 Updating target for build PACKAGEBUILD-24076597 Get:1 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.4 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5730 kB] Fetched 22.3 MB in 3s (7197 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 84 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 5324 kB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:17 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:24 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:25 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:29 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.8.3-1 [15.7 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl3 amd64 3.0.3-5ubuntu3 [1897 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 openssl amd64 3.0.3-5ubuntu3 [1175 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-3ubuntu1 [11.3 MB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-3ubuntu1 [2074 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-3ubuntu1 [2265 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-3ubuntu1 [20.0 MB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-3ubuntu1 [2484 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-3ubuntu1 [2241 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 9s (8957 kB/s) (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../base-files_12.2ubuntu1_amd64.deb ... Unpacking base-files (12.2ubuntu1) over (12ubuntu5) ... Setting up base-files (12.2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38-4ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.38-4ubuntu1) over (1:2.37.2-4ubuntu3) ... Setting up bsdutils (1:2.38-4ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.2+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.2+dfsg-1) over (1.4.8+dfsg-3build1) ... Setting up libzstd1:amd64 (1.5.2+dfsg-1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../0-libatomic1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../1-libubsan1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../2-libquadmath0_12.1.0-2ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../3-liblsan0_12.1.0-2ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../4-libitm1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../5-libgomp1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../6-gcc-12-base_12.1.0-2ubuntu1_amd64.deb ... Unpacking gcc-12-base:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Setting up gcc-12-base:amd64 (12.1.0-2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Setting up libgcc-s1:amd64 (12.1.0-2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libcc1-0_12.1.0-2ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../libstdc++6_12.1.0-2ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Setting up libstdc++6:amd64 (12.1.0-2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.45-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.45-2) over (1.43-3) ... Setting up libgpg-error0:amd64 (1.45-2) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-2ubuntu1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.1-2ubuntu1) over (1.9.4-3ubuntu3) ... Setting up libgcrypt20:amd64 (1.10.1-2ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.5-2.1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.5-2.1) over (5.2.5-2ubuntu1) ... Setting up liblzma5:amd64 (5.2.5-2.1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../systemd-sysv_249.11-0ubuntu4_amd64.deb ... Unpacking systemd-sysv (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Preparing to unpack .../libapparmor1_3.0.4-2ubuntu3_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.4-2ubuntu3) over (3.0.4-2ubuntu2) ... Preparing to unpack .../libgnutls30_3.7.6-2ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.6-2ubuntu1) over (3.7.4-2ubuntu1) ... Setting up libgnutls30:amd64 (3.7.6-2ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.7-1ubuntu6_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.7-1ubuntu6) over (1.8.7-1ubuntu5) ... Preparing to unpack .../libblkid1_2.38-4ubuntu1_amd64.deb ... Unpacking libblkid1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libblkid1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libselinux1_3.4-1_amd64.deb ... Unpacking libselinux1:amd64 (3.4-1) over (3.3-1build2) ... Setting up libselinux1:amd64 (3.4-1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libmount1_2.38-4ubuntu1_amd64.deb ... Unpacking libmount1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libmount1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38-4ubuntu1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libsmartcols1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../login_1%3a4.11.1+dfsg1-2ubuntu1_amd64.deb ... Unpacking login (1:4.11.1+dfsg1-2ubuntu1) over (1:4.8.1-2ubuntu2) ... Setting up login (1:4.11.1+dfsg1-2ubuntu1) ... Installing new version of config file /etc/login.defs ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../util-linux_2.38-4ubuntu1_amd64.deb ... Unpacking util-linux (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Selecting previously unselected package util-linux-extra. Preparing to unpack .../util-linux-extra_2.38-4ubuntu1_amd64.deb ... Unpacking util-linux-extra (2.38-4ubuntu1) ... Setting up util-linux-extra (2.38-4ubuntu1) ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../mount_2.38-4ubuntu1_amd64.deb ... Unpacking mount (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Preparing to unpack .../libsemanage-common_3.4-1_all.deb ... Unpacking libsemanage-common (3.4-1) over (3.3-1build2) ... Setting up libsemanage-common (3.4-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../libsepol2_3.4-2_amd64.deb ... Unpacking libsepol2:amd64 (3.4-2) over (3.3-1build1) ... Setting up libsepol2:amd64 (3.4-2) ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1) over (3.3-1build2) ... Setting up libsemanage2:amd64 (3.4-1) ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.11.1+dfsg1-2ubuntu1_amd64.deb ... Unpacking passwd (1:4.11.1+dfsg1-2ubuntu1) over (1:4.8.1-2ubuntu2) ... Setting up passwd (1:4.11.1+dfsg1-2ubuntu1) ... Installing new version of config file /etc/default/useradd ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../adduser_3.121ubuntu1_all.deb ... Unpacking adduser (3.121ubuntu1) over (3.118ubuntu5) ... Setting up adduser (3.121ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../systemd_249.11-0ubuntu4_amd64.deb ... Unpacking systemd (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Preparing to unpack .../libsystemd0_249.11-0ubuntu4_amd64.deb ... Unpacking libsystemd0:amd64 (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Setting up libsystemd0:amd64 (249.11-0ubuntu4) ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../libudev1_249.11-0ubuntu4_amd64.deb ... Unpacking libudev1:amd64 (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Setting up libudev1:amd64 (249.11-0ubuntu4) ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.0_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.5.0) over (2.4.5) ... Setting up libapt-pkg6.0:amd64 (2.5.0) ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.8ubuntu1_amd64.deb ... Unpacking dpkg (1.21.8ubuntu1) over (1.21.1ubuntu2) ... Setting up dpkg (1.21.8ubuntu1) ... (Reading database ... 13464 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1_amd64.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-8ubuntu1) over (0.5.11+git20210903+057cd650a4ed-3build1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... (Reading database ... 13465 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.3+20220423-2_amd64.deb ... Unpacking ncurses-bin (6.3+20220423-2) over (6.3-2) ... Setting up ncurses-bin (6.3+20220423-2) ... (Reading database ... 13465 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.63_all.deb ... Unpacking init-system-helpers (1.63) over (1.62) ... Setting up init-system-helpers (1.63) ... (Reading database ... 13465 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3+20220423-2_all.deb ... Unpacking ncurses-base (6.3+20220423-2) over (6.3-2) ... Setting up ncurses-base (6.3+20220423-2) ... (Reading database ... 13466 files and directories currently installed.) Preparing to unpack .../archives/apt_2.5.0_amd64.deb ... Unpacking apt (2.5.0) over (2.4.5) ... Setting up apt (2.5.0) ... (Reading database ... 13467 files and directories currently installed.) Preparing to unpack .../logsave_1.46.5-2ubuntu2_amd64.deb ... Unpacking logsave (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../libext2fs2_1.46.5-2ubuntu2_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Setting up libext2fs2:amd64 (1.46.5-2ubuntu2) ... (Reading database ... 13467 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.5-2ubuntu2_amd64.deb ... Unpacking e2fsprogs (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Setting up libapparmor1:amd64 (3.0.4-2ubuntu3) ... Setting up libip4tc2:amd64 (1.8.7-1ubuntu6) ... Setting up util-linux (2.38-4ubuntu1) ... Setting up mount (2.38-4ubuntu1) ... Setting up systemd (249.11-0ubuntu4) ... Initializing machine ID from random generator. Setting up systemd-sysv (249.11-0ubuntu4) ... (Reading database ... 13467 files and directories currently installed.) Preparing to unpack .../archives/init_1.63_amd64.deb ... Unpacking init (1.63) over (1.62) ... Preparing to unpack .../libcap-ng0_0.8.3-1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.8.3-1) over (0.7.9-2.2build3) ... Setting up libcap-ng0:amd64 (0.8.3-1) ... (Reading database ... 13469 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.9_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg1-0.9) over (5.3.28+dfsg1-0.8ubuntu3) ... Setting up libdb5.3:amd64 (5.3.28+dfsg1-0.9) ... (Reading database ... 13469 files and directories currently installed.) Preparing to unpack .../libncurses6_6.3+20220423-2_amd64.deb ... Unpacking libncurses6:amd64 (6.3+20220423-2) over (6.3-2) ... Preparing to unpack .../libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) over (6.3-2) ... Preparing to unpack .../libtinfo6_6.3+20220423-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3+20220423-2) over (6.3-2) ... Setting up libtinfo6:amd64 (6.3+20220423-2) ... (Reading database ... 13468 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38-4ubuntu1_amd64.deb ... Unpacking libuuid1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libuuid1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13469 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.46.5-2ubuntu2_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../01-libss2_1.46.5-2ubuntu2_amd64.deb ... Unpacking libss2:amd64 (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../02-mawk_1.3.4.20200120-3.1_amd64.deb ... Unpacking mawk (1.3.4.20200120-3.1) over (1.3.4.20200120-3) ... Preparing to unpack .../03-libkeyutils1_1.6.1-3ubuntu1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.1-3ubuntu1) over (1.6.1-2ubuntu3) ... Preparing to unpack .../04-readline-common_8.1.2-1.2_all.deb ... Unpacking readline-common (8.1.2-1.2) over (8.1.2-1) ... Preparing to unpack .../05-libreadline8_8.1.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.1.2-1.2) over (8.1.2-1) ... Preparing to unpack .../06-libsqlite3-0_3.38.5-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.38.5-1) over (3.37.2-2) ... Preparing to unpack .../07-libssl3_3.0.3-5ubuntu3_amd64.deb ... Unpacking libssl3:amd64 (3.0.3-5ubuntu3) over (3.0.2-0ubuntu1) ... Preparing to unpack .../08-openssl_3.0.3-5ubuntu3_amd64.deb ... Unpacking openssl (3.0.3-5ubuntu3) over (3.0.2-0ubuntu1) ... Preparing to unpack .../09-libpng16-16_1.6.37-5_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-5) over (1.6.37-3build5) ... Preparing to unpack .../10-xz-utils_5.2.5-2.1_amd64.deb ... Unpacking xz-utils (5.2.5-2.1) over (5.2.5-2ubuntu1) ... Preparing to unpack .../11-libctf0_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libctf0:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../12-libctf-nobfd0_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../13-binutils-x86-64-linux-gnu_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../14-libbinutils_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../15-binutils_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking binutils (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../16-binutils-common_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../17-libgprofng0_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libgprofng0:amd64 (2.38.50.20220615-4ubuntu1) ... Preparing to unpack .../18-g++-11_11.3.0-3ubuntu1_amd64.deb ... Unpacking g++-11 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../19-libstdc++-11-dev_11.3.0-3ubuntu1_amd64.deb ... Unpacking libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../20-libasan6_11.3.0-3ubuntu1_amd64.deb ... Unpacking libasan6:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../21-gcc-11_11.3.0-3ubuntu1_amd64.deb ... Unpacking gcc-11 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../22-libgcc-11-dev_11.3.0-3ubuntu1_amd64.deb ... Unpacking libgcc-11-dev:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../23-libtsan0_11.3.0-3ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../24-cpp-11_11.3.0-3ubuntu1_amd64.deb ... Unpacking cpp-11 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../25-gcc-11-base_11.3.0-3ubuntu1_amd64.deb ... Unpacking gcc-11-base:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../26-dpkg-dev_1.21.8ubuntu1_all.deb ... Unpacking dpkg-dev (1.21.8ubuntu1) over (1.21.1ubuntu2) ... Preparing to unpack .../27-libdpkg-perl_1.21.8ubuntu1_all.deb ... Unpacking libdpkg-perl (1.21.8ubuntu1) over (1.21.1ubuntu2) ... Preparing to unpack .../28-lto-disabled-list_27_all.deb ... Unpacking lto-disabled-list (27) over (25) ... Preparing to unpack .../29-libfakeroot_1.29-1ubuntu1_amd64.deb ... Unpacking libfakeroot:amd64 (1.29-1ubuntu1) over (1.28-1ubuntu1) ... Preparing to unpack .../30-fakeroot_1.29-1ubuntu1_amd64.deb ... Unpacking fakeroot (1.29-1ubuntu1) over (1.28-1ubuntu1) ... Preparing to unpack .../31-pinentry-curses_1.2.0-1ubuntu1_amd64.deb ... Unpacking pinentry-curses (1.2.0-1ubuntu1) over (1.1.1-1build2) ... Preparing to unpack .../32-policyrcd-script-zg2_0.1-3.1_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3.1) over (0.1-3) ... Setting up gcc-11-base:amd64 (11.3.0-3ubuntu1) ... Setting up libkeyutils1:amd64 (1.6.1-3ubuntu1) ... Setting up lto-disabled-list (27) ... Setting up init (1.63) ... Setting up libsqlite3-0:amd64 (3.38.5-1) ... Setting up binutils-common:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up libssl3:amd64 (3.0.3-5ubuntu3) ... Setting up libctf-nobfd0:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up libcom-err2:amd64 (1.46.5-2ubuntu2) ... Setting up libgomp1:amd64 (12.1.0-2ubuntu1) ... Setting up libfakeroot:amd64 (1.29-1ubuntu1) ... Setting up libasan6:amd64 (11.3.0-3ubuntu1) ... Setting up fakeroot (1.29-1ubuntu1) ... Setting up policyrcd-script-zg2 (0.1-3.1) ... Setting up libncurses6:amd64 (6.3+20220423-2) ... Setting up xz-utils (5.2.5-2.1) ... Setting up libquadmath0:amd64 (12.1.0-2ubuntu1) ... Setting up libpng16-16:amd64 (1.6.37-5) ... Setting up libatomic1:amd64 (12.1.0-2ubuntu1) ... Setting up libss2:amd64 (1.46.5-2ubuntu2) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libdpkg-perl (1.21.8ubuntu1) ... Setting up logsave (1.46.5-2ubuntu2) ... Setting up libubsan1:amd64 (12.1.0-2ubuntu1) ... Setting up mawk (1.3.4.20200120-3.1) ... Setting up libbinutils:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up openssl (3.0.3-5ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1.2) ... Setting up libcc1-0:amd64 (12.1.0-2ubuntu1) ... Setting up liblsan0:amd64 (12.1.0-2ubuntu1) ... Setting up libitm1:amd64 (12.1.0-2ubuntu1) ... Setting up libtsan0:amd64 (11.3.0-3ubuntu1) ... Setting up libctf0:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up pinentry-curses (1.2.0-1ubuntu1) ... Setting up cpp-11 (11.3.0-3ubuntu1) ... Setting up libreadline8:amd64 (8.1.2-1.2) ... Setting up e2fsprogs (1.46.5-2ubuntu2) ... Setting up libgprofng0:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up libgcc-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.38.50.20220615-4ubuntu1) ... Setting up binutils (2.38.50.20220615-4ubuntu1) ... Setting up dpkg-dev (1.21.8ubuntu1) ... Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24076597 amd64 kinetic -c chroot:build-PACKAGEBUILD-24076597 --arch=amd64 --dist=kinetic --nolog -A soapaligner_2.20-5.dsc Initiating build PACKAGEBUILD-24076597 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-041.buildd +==============================================================================+ | soapaligner 2.20-5 (amd64) Thu, 23 Jun 2022 18:30:20 +0000 | +==============================================================================+ Package: soapaligner Version: 2.20-5 Source Version: 2.20-5 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24076597/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/soapaligner-8uvVMs/resolver-r9FKAw' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- soapaligner_2.20-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/soapaligner-8uvVMs/soapaligner-2.20' with '<>' I: NOTICE: Log filtering will replace 'build/soapaligner-8uvVMs' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [370 B] Get:5 copy:/<>/apt_archive ./ Packages [449 B] Fetched 1776 B in 0s (119 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.5 MB of archives. After this operation, 66.4 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [660 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libelf1 amd64 0.187-1 [51.3 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu71 amd64 71.1-3 [10.6 MB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2 amd64 2.9.14+dfsg-1 [756 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 file amd64 1:5.41-4 [21.5 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext-base amd64 0.21-6 [37.9 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 autopoint all 0.21-6 [421 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdebhelper-perl all 13.7.1ubuntu1 [66.9 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtool all 2.4.7-4 [166 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-override-perl all 0.09-3 [9756 B] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdw1 amd64 0.187-1 [247 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 debugedit amd64 1:5.0-4build1 [47.2 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 dwz amd64 0.14-1build2 [105 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext amd64 0.21-6 [862 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 debhelper all 13.7.1ubuntu1 [940 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.5 MB in 1s (34.4 MB/s) Selecting previously unselected package libelf1:amd64. (Reading database ... 13498 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.187-1_amd64.deb ... Unpacking libelf1:amd64 (0.187-1) ... Selecting previously unselected package libicu71:amd64. Preparing to unpack .../01-libicu71_71.1-3_amd64.deb ... Unpacking libicu71:amd64 (71.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38-4ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../05-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-6_amd64.deb ... Unpacking gettext-base (0.21-6) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.7-1build2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.4-8build1_amd64.deb ... Unpacking groff-base (1.22.4-8build1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.6-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.6-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.10.2-1_amd64.deb ... Unpacking man-db (2.10.2-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../12-libsigsegv2_2.13-1ubuntu3_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1ubuntu3) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-5ubuntu2_amd64.deb ... Unpacking m4 (1.4.18-5ubuntu2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-6_all.deb ... Unpacking autopoint (0.21-6) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.7.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.7.1ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.4.7-4_all.deb ... Unpacking libtool (2.4.7-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../22-libsub-override-perl_0.09-3_all.deb ... Unpacking libsub-override-perl (0.09-3) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.13.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.0-1) ... Selecting previously unselected package libdw1:amd64. Preparing to unpack .../25-libdw1_0.187-1_amd64.deb ... Unpacking libdw1:amd64 (0.187-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../26-debugedit_1%3a5.0-4build1_amd64.deb ... Unpacking debugedit (1:5.0-4build1) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.14-1build2_amd64.deb ... Unpacking dwz (0.14-1build2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-6_amd64.deb ... Unpacking gettext (0.21-6) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.7.1ubuntu1_all.deb ... Unpacking debhelper (13.7.1ubuntu1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../32-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.6-1) ... Setting up libicu71:amd64 (71.1-3) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.7.1ubuntu1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up gettext-base (0.21-6) ... Setting up file (1:5.41-4) ... Setting up autotools-dev (20220109.1) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ... Setting up autopoint (0.21-6) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:amd64 (0.187-1) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any-amd64) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.50.20220615-4ubuntu1 binutils-common_2.38.50.20220615-4ubuntu1 binutils-x86-64-linux-gnu_2.38.50.20220615-4ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-3ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.8ubuntu1 dpkg-dev_1.21.8ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-3ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-3ubuntu1 gcc-11-base_11.3.0-3ubuntu1 gcc-12-base_12.1.0-2ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu2 gpg-agent_2.2.27-3ubuntu2 gpgconf_2.2.27-3ubuntu2 gpgv_2.2.27-3ubuntu2 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 init_1.63 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.4-2ubuntu3 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-3ubuntu1 libassuan0_2.5.5-3 libatomic1_12.1.0-2ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libbinutils_2.38.50.20220615-4ubuntu1 libblkid1_2.38-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcap-ng0_0.8.3-1 libcap2_1:2.44-1build3 libcc1-0_12.1.0-2ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38.50.20220615-4ubuntu1 libctf0_2.38.50.20220615-4ubuntu1 libdb5.3_5.3.28+dfsg1-0.9 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.7.1ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.8ubuntu1 libdw1_0.187-1 libelf1_0.187-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-11-dev_11.3.0-3ubuntu1 libgcc-s1_12.1.0-2ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.6-2ubuntu1 libgomp1_12.1.0-2ubuntu1 libgpg-error0_1.45-2 libgprofng0_2.38.50.20220615-4ubuntu1 libgssapi-krb5-2_1.19.2-2 libhogweed6_3.7.3-1build2 libicu71_71.1-3 libidn2-0_2.3.2-2build1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.24-2build1 libitm1_12.1.0-2ubuntu1 libjson-c5_0.16-1 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.1.0-2ubuntu1 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1build2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-3ubuntu1 libpipeline1_1.5.6-1 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libquadmath0_12.1.0-2ubuntu1 libreadline8_8.1.2-1.2 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.38.5-1 libss2_1.46.5-2ubuntu2 libssl3_3.0.3-5ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 libsub-override-perl_0.09-3 libsystemd0_249.11-0ubuntu4 libtasn1-6_4.18.0-4build1 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2build1 libtirpc-dev_1.3.2-2build1 libtirpc3_1.3.2-2build1 libtool_2.4.7-4 libtsan0_11.3.0-3ubuntu1 libubsan1_12.1.0-2ubuntu1 libuchardet0_0.0.7-1build2 libudev1_249.11-0ubuntu4 libunistring2_1.0-1 libuuid1_2.38-4ubuntu1 libxml2_2.9.14+dfsg-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.15.0-27.28 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_27 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.3-5ubuntu3 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.34_5.34.0-3ubuntu1 pinentry-curses_1.2.0-1ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-6ubuntu2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_249.11-0ubuntu4 systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: soapaligner Binary: soapaligner Architecture: any-amd64 Version: 2.20-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/soapaligner Vcs-Git: https://salsa.debian.org/med-team/soapaligner.git Build-Depends: debhelper-compat (= 13) Package-List: soapaligner deb science optional arch=any-amd64,x32 Checksums-Sha1: b99762edeee90352f191511f0d26db32ab9e43d1 110922 soapaligner_2.20.orig.tar.gz 3a8105fb94fe86e89a53059b09ad5f9ecc119022 6408 soapaligner_2.20-5.debian.tar.xz Checksums-Sha256: c5253dddc35e289723f3daada4a3a083111ff6fb9898bc8241dab6f6f972d456 110922 soapaligner_2.20.orig.tar.gz 16c6459f2b63507fd99dfc1e278f0b5bea7092a9934880b88498b8b015fd0ae3 6408 soapaligner_2.20-5.debian.tar.xz Files: ca75753697b12749c42356f366738fef 110922 soapaligner_2.20.orig.tar.gz 94c9ac888c01e1e6c2d7fd85b3850b02 6408 soapaligner_2.20-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAAOt0UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEVWQ/5ASTl2qFB2ifO3+cEaZaTgyhTU8I3 T1E0DzDC3ix8ZVf2wQcVrHsYzP6A9en4yuWDH4FELvqcjJXRj6IVxbTdF+hG6rH8 rx9K+O5rmmbxkhH4VVElEeSC0Xrzo/vtTajES1NzTr+bqyUxnxIqve8sARQ7cA9J V3mmzqPLreJGrpN2unE4X+dvkt2v7xgMwAPT3otfHYtzngMtE59t+cqeyWic5LAj 2kBhbXTQghfMLvdIeX/MGz36FsKWzGB7bJOVKbTDstgMy5OWRSBfPF4eMOliP8xD nH5xrVfHy9FgEUCBjEkPxcu00GQEUQMtAklI5vzI6xMLRsbg2E+yjwHKQIpuJuMZ rDwe7eMqwiecmvT/lznauKam34meWhrgx3ClKnv9BxOObvlcAWWc5I4qxL8/N09S XuIy7Se2wmiNNxpyTFP6f4NtRrtadZW31Y0bsucZVFkaomN+RaIO8MGldgF2idyp o2QMnI6WAgoUZD90/2zsQj0RrVgBG13FPjRgNGgblzoelCr77gHgcV0i+bdLYm+J zK+UE2Ma76BiFs2idti1zh8hCE5cbr2hYWDSBdaYObN8KZmJE7bBCVH0YxDrASN/ PTANR6FXQ0kqOpWWZ8H45OcEVMu9hhbxUJf2z4xF9LXBEsfvLfv4QXepdL0lnK1b bEp8xTfp9oRghtA= =xZ4B -----END PGP SIGNATURE----- gpgv: Signature made Thu Jan 14 12:36:45 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./soapaligner_2.20-5.dsc dpkg-source: info: extracting soapaligner in /<> dpkg-source: info: unpacking soapaligner_2.20.orig.tar.gz dpkg-source: info: unpacking soapaligner_2.20-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying compiler_options.patch dpkg-source: info: applying linkerror.patch dpkg-source: info: applying UsageDoublette.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc-10.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24076597 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24076597 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24076597 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package soapaligner dpkg-buildpackage: info: source version 2.20-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home make -j4 clean make[1]: Entering directory '/<>' rm -f *.o soap make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/soapaligner.substvars debian/files rm -fr -- debian/soapaligner/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure install -d /<>/debian/.debhelper/generated/_source/home dh_auto_build make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.c -o SeqIO.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MiscUtilities.c -o MiscUtilities.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" MemManager.c -o MemManager.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" TextConverter.c -o TextConverter.o TextConverter.c: In function ‘ReadCharMap’: TextConverter.c:85:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85 | fscanf(inputFile, " %c %u \n", &c, &v); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextConverter.c: In function ‘DNALoadPacked’: TextConverter.c:700:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 700 | fread(&lastByteLength, sizeof(unsigned char), 1, inputFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextConverter.c:710:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 710 | fread(packedText, 1, packedFileLen, inputFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextConverter.c: In function ‘InitialLoadPackedIncFromEnd’: TextConverter.c:831:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 831 | fread(&lastByteLength, sizeof(unsigned char), 1, packedFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextConverter.c:851:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 851 | fread(packedOutput, sizeof(unsigned char), packedFileLenForThisLoad, packedFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextConverter.c: In function ‘LoadPackedIncFromEnd’: TextConverter.c:866:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 866 | fread(packedOutput, sizeof(unsigned char), packedLengthPerLoad, packedFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextConverter.c: In function ‘InitialLoadTextIncFromEnd’: TextConverter.c:895:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 895 | fread(textOutput, sizeof(unsigned char), textLenForThisLoad, textFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextConverter.c: In function ‘LoadTextIncFromEnd’: TextConverter.c:913:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 913 | fread(textOutput, sizeof(unsigned char), textLengthPerLoad, textFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c: In function ‘MMBulkLoad’: MemManager.c:1043:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1043 | fread(&mmBulk->itemSize, sizeof(unsigned int), 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c:1044:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1044 | fread(&mmBulk->itemPerAllocationInPowerOf2, sizeof(unsigned int), 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c:1045:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1045 | fread(&mmBulk->boundaryCushionSize, sizeof(unsigned int), 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c:1046:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1046 | fread(&mmBulk->currentDirectoryEntry, sizeof(unsigned int), 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c:1047:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1047 | fread(&mmBulk->nextUnusedItem, sizeof(unsigned int), 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c:1048:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1048 | fread(&mmBulk->directorySize, sizeof(unsigned int), 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c:1065:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1065 | fread(mmBulk->directory[i], mmBulk->itemSize << mmBulk->itemPerAllocationInPowerOf2, 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MemManager.c:1079:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1079 | fread(mmBulk->directory[i], mmBulk->itemSize * mmBulk->nextUnusedItem, 1, input); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" r250.c -o r250.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" DNACount.c -o DNACount.o r250.c: In function ‘randlcg’: r250.c:33:41: warning: overflow in conversion from ‘long int’ to ‘int’ changes value from ‘548781581296767’ to ‘724984959’ [-Woverflow] 33 | static int quotient1 = LONG_MAX / 16807L; | ^~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" HSP.c -o HSP.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Timing.c -o Timing.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWT.c -o BWT.o HSP.c: In function ‘HSPLoad’: HSP.c:89:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 89 | fscanf(annotationFile, "%u\t%d\t%d\n", &numOfChar, &chrNum, &FASTARandomSeed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ HSP.c:94:25: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 94 | fscanf(annotationFile, "%u\t", &nameLen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ HSP.c:96:25: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fscanf(annotationFile, "%s\n", hsp->chrName[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ HSP.c:98:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 98 | fscanf(annotationFile, "%d\n", &(hsp->numOfBlock)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ HSP.c:104:25: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 104 | fscanf(annotationFile, "%d\t%u\t%u\t%u\n", &(p->chrID), &(p->blockStart), &(p->blockEnd), &(p->ori)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" extratools.c -o extratools.o BWT.c: In function ‘BWTLoad’: BWT.c:155:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fread(&bwt->inverseSa0, sizeof(unsigned int), 1, bwtCodeFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:159:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 159 | fread(bwt->cumulativeFreq + 1, sizeof(unsigned int), ALPHABET_SIZE, bwtCodeFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:162:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fread(&tmp, sizeof(unsigned int), 1, occValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:168:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | fread(&tmp, sizeof(unsigned int), 1, occValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:178:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 178 | fread(bwt->bwtCode, sizeof(unsigned int), bwtCodeLengthInFile, bwtCodeFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soapio.c -o soapio.o BWT.c:185:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 185 | fread(bwt->occValue, sizeof(unsigned int), bwt->occSizeInWord, occValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:187:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 187 | fread(bwt->occValueMajor, sizeof(unsigned int), bwt->occMajorSizeInWord, occValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:205:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 205 | fread(&tmp, sizeof(unsigned int), 1, saValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:211:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | fread(&tmp, sizeof(unsigned int), 1, saValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:217:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 217 | fread(&bwt->saInterval, sizeof(unsigned int), 1, saValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:220:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 220 | fread(bwt->saValue, 1, bwt->saValueSize, saValueFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:232:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fread(&tmp, sizeof(unsigned int), 1, inverseSaFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:238:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fread(&tmp, sizeof(unsigned int), 1, inverseSaFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:244:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 244 | fread(&bwt->inverseSaInterval, sizeof(unsigned int), 1, inverseSaFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:247:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 247 | fread(bwt->inverseSa, 1, bwt->inverseSaSize, inverseSaFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:257:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 257 | fread(&tmp, sizeof(unsigned int), 1, saIndexRangeFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:263:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 263 | fread(&tmp, sizeof(unsigned int), 1, saIndexRangeFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:269:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 269 | fread(&bwt->saIndexRangeNumOfChar, sizeof(unsigned int), 1, saIndexRangeFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BWT.c:272:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 272 | fread(bwt->saIndexRange, sizeof(SaIndexRange), numOfSaIndexRange, saIndexRangeFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" BWTAln.c -o BWTAln.o In file included from extratools.c:1: extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ extratools.c: In function ‘LoadLookupTable’: extratools.c:23:17: warning: ignoring return value of ‘read’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 23 | read(fin, (*lookupTable).table + i, step * sizeof(*(*lookupTable).table)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c: In function ‘LoadHashTable’: extratools.c:60:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 60 | fread((unsigned int *)&((*hashTable).tableSize),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:61:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 61 | fread((unsigned int *)&((*hashTable).a),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:62:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 62 | fread((unsigned int *)&((*hashTable).b),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:63:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 63 | fread((unsigned int *)&((*hashTable).prime),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:64:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 64 | fread((unsigned int *)&ttlItem,sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:65:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 65 | fread((unsigned int *)&ttlOccurrence,sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:75:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 75 | fread((char *) &mk,1,1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:81:13: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 81 | fread((unsigned int *)&((*hashTable).table[i].index),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:82:13: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 82 | fread((unsigned int *)&((*hashTable).table[i].count),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:86:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | fread((unsigned int *)&((*hashTable).itemList[i].l),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:87:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 87 | fread((unsigned int *)&((*hashTable).itemList[i].r),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:88:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 88 | fread((unsigned int *)&((*hashTable).itemList[i].occIndex),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ extratools.c:91:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fread((unsigned int *)&((*hashTable).occList[i]),sizeof(unsigned int),1,inFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from soapio.h:21, from soapio.c:17: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" Match.c -o Match.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" PairMatch.c -o PairMatch.o In file included from BWTAln.h:23, from BWTAln.c:1: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" stdaln.c -o stdaln.o In file included from Match.c:17: Match.h:130:12: warning: inline function ‘CheckIns’ declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from Match.c:17: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ In file included from PairMatch.c:19: Match.h:132:13: warning: inline function ‘PickupHit’ declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from PairMatch.c:19: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" kstring.c -o kstring.o cc -c -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" soap.c -o soap.o In file included from soap.c:24: Match.h:132:13: warning: inline function ‘PickupHit’ declared but never defined 132 | inline void PickupHit(ALNSEQ *, const int ,int *, HITTABLE *,const unsigned int *, const unsigned int, unsigned short * ); | ^~~~~~~~~ Match.h:130:12: warning: inline function ‘CheckIns’ declared but never defined 130 | inline int CheckIns(HITITEM *, HITITEM *, PEAUX *); | ^~~~~~~~ In file included from BWTAln.h:23, from Match.h:23, from soap.c:24: extratools.h:84:12: warning: inline function ‘CalMismatch’ declared but never defined 84 | inline int CalMismatch(const char *,const unsigned int *,const unsigned int , const unsigned int, const unsigned int); | ^~~~~~~~~~~ extratools.h:83:12: warning: inline function ‘altCalMM’ declared but never defined 83 | inline int altCalMM(unsigned int x); | ^~~~~~~~ cc -flto -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -maccumulate-outgoing-args -fomit-frame-pointer -DPTHREADS -DMAKE_TIME=\""SOURCE_DATE_EPOCH"\" SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o soap.o -o soap -Wl,-flto -Wl,-Bsymbolic-functions -Wl,-z,relro -lm -lpthread In function ‘aln_local_core’, inlined from ‘SWRescue’ at PairMatch.c:167:3: stdaln.c:740:17: warning: ‘free’ called on pointer ‘MEM[(int * *)_1909]’ with nonzero offset 4 [-Wfree-nonheap-object] 740 | MYFREE(s_array[i]); | ^ make[1]: Leaving directory '/<>' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-wfdGKikh create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/soapaligner.substvars rm -fr -- debian/.debhelper/generated/soapaligner/ debian/soapaligner/ debian/tmp/ dh_auto_install --destdir=debian/soapaligner/ install -d /<>/debian/soapaligner dh_install install -d debian/soapaligner/usr/bin cp --reflink=auto -a ./soap debian/soapaligner/usr/bin/ install -d debian/.debhelper/generated/soapaligner dh_installdocs install -d debian/soapaligner/usr/share/doc/soapaligner cp --reflink=auto -a ./NEWS debian/soapaligner/usr/share/doc/soapaligner chmod -R u\+rw,go=rX debian/soapaligner/usr/share/doc install -p -m0644 debian/README.Debian debian/soapaligner/usr/share/doc/soapaligner/README.Debian install -p -m0644 debian/copyright debian/soapaligner/usr/share/doc/soapaligner/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/soapaligner/usr/share/doc/soapaligner/changelog.Debian dh_installman install -d debian/soapaligner/usr/share/man/man1/ install -p -m0644 ./soap.1 debian/soapaligner/usr/share/man/man1/soap.1 man-recode --to-code UTF-8 --suffix .dh-new debian/soapaligner/usr/share/man/man1/soap.1 mv debian/soapaligner/usr/share/man/man1/soap.1.dh-new debian/soapaligner/usr/share/man/man1/soap.1 chmod 0644 -- debian/soapaligner/usr/share/man/man1/soap.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/soapaligner chmod a-x usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 gzip -9nf usr/share/doc/soapaligner/NEWS usr/share/doc/soapaligner/changelog.Debian usr/share/man/man1/soap.1 cd '/<>' dh_fixperms find debian/soapaligner ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/soapaligner/usr/share/doc -type f -a -true -a ! -regex 'debian/soapaligner/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/soapaligner/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/soapaligner/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/soapaligner/usr/bin/soap dh_strip -a debugedit --build-id --build-id-seed=soapaligner/2.20-5 debian/soapaligner/usr/bin/soap f6fb9c5b2772d313b5e1ee3302243be2989d7a0f install -d debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/soapaligner/usr/bin/soap debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/f6/fb9c5b2772d313b5e1ee3302243be2989d7a0f.debug chmod 0644 -- debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/f6/fb9c5b2772d313b5e1ee3302243be2989d7a0f.debug strip --remove-section=.comment --remove-section=.note -o /tmp/_B0pco0vAJ/stripORCTxi debian/soapaligner/usr/bin/soap chmod --reference debian/soapaligner/usr/bin/soap /tmp/_B0pco0vAJ/stripORCTxi cat '/tmp/_B0pco0vAJ/stripORCTxi' > 'debian/soapaligner/usr/bin/soap' chmod --reference /tmp/_B0pco0vAJ/stripORCTxi debian/soapaligner/usr/bin/soap objcopy --add-gnu-debuglink debian/.debhelper/soapaligner/dbgsym-root/usr/lib/debug/.build-id/f6/fb9c5b2772d313b5e1ee3302243be2989d7a0f.debug debian/soapaligner/usr/bin/soap /tmp/_B0pco0vAJ/objcopy99YMgB chmod --reference debian/soapaligner/usr/bin/soap /tmp/_B0pco0vAJ/objcopy99YMgB cat '/tmp/_B0pco0vAJ/objcopy99YMgB' > 'debian/soapaligner/usr/bin/soap' chmod --reference /tmp/_B0pco0vAJ/objcopy99YMgB debian/soapaligner/usr/bin/soap rm -fr debian/.debhelper/soapaligner/dbgsym-root dh_makeshlibs -a rm -f debian/soapaligner/DEBIAN/shlibs dh_shlibdeps -a install -d debian/soapaligner/DEBIAN dpkg-shlibdeps -Tdebian/soapaligner.substvars debian/soapaligner/usr/bin/soap dh_installdeb dh_gencontrol echo misc:Depends= >> debian/soapaligner.substvars echo misc:Pre-Depends= >> debian/soapaligner.substvars dpkg-gencontrol -psoapaligner -ldebian/changelog -Tdebian/soapaligner.substvars -Pdebian/soapaligner chmod 0644 -- debian/soapaligner/DEBIAN/control dh_md5sums cd debian/soapaligner >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/soapaligner/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/soapaligner .. INFO: pkgstriptranslations version 149 pkgstriptranslations: processing soapaligner (in debian/soapaligner); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/soapaligner/DEBIAN/control, package soapaligner, directory debian/soapaligner pkgstripfiles: Running PNG optimization (using 4 cpus) for package soapaligner ... pkgstripfiles: No PNG files. dpkg-deb: building package 'soapaligner' in '../soapaligner_2.20-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../soapaligner_2.20-5_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../soapaligner_2.20-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T18:30:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ soapaligner_2.20-5_amd64.changes: --------------------------------- Format: 1.8 Date: Thu, 14 Jan 2021 17:05:45 +0530 Source: soapaligner Binary: soapaligner Built-For-Profiles: noudeb Architecture: amd64 Version: 2.20-5 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: soapaligner - aligner of short reads of next generation sequencers Closes: 979681 Changes: soapaligner (2.20-5) unstable; urgency=medium . * Team Upload. * d/p/gcc-10.patch: Fix compilation with GCC 10. - Thank you, Logan Rosen (Closes: #979681) * Declare compliance with policy 4.5.1 * Bump debhelper-compat version to 13 Checksums-Sha1: b3cdd72d3e73ef48a0063015777b8d146a3d9f69 5565 soapaligner_2.20-5_amd64.buildinfo c5929bc3ecb90e41388b594cd75e032b59069121 56726 soapaligner_2.20-5_amd64.deb Checksums-Sha256: f591a01ef5880306d13b80122c2aa4d8478876543e1fbb09b64d9862e92b94c8 5565 soapaligner_2.20-5_amd64.buildinfo bb3a2fa2b519a8c1a3d31e140aae0123181830709309bb237425671ec655774d 56726 soapaligner_2.20-5_amd64.deb Files: 3a3e312cb253dbab73e94de57f23b5bc 5565 science optional soapaligner_2.20-5_amd64.buildinfo 31d7a4c3e48bdfabfd3881057f60e101 56726 science optional soapaligner_2.20-5_amd64.deb /<>/soapaligner_2.20-5_amd64.changes.new could not be renamed to /<>/soapaligner_2.20-5_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: soapaligner Binary: soapaligner Architecture: amd64 Version: 2.20-5 Checksums-Md5: 31d7a4c3e48bdfabfd3881057f60e101 56726 soapaligner_2.20-5_amd64.deb Checksums-Sha1: c5929bc3ecb90e41388b594cd75e032b59069121 56726 soapaligner_2.20-5_amd64.deb Checksums-Sha256: bb3a2fa2b519a8c1a3d31e140aae0123181830709309bb237425671ec655774d 56726 soapaligner_2.20-5_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 18:30:43 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libbinutils (= 2.38.50.20220615-4ubuntu1), libblkid1 (= 2.38-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libelf1 (= 0.187-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgssapi-krb5-2 (= 1.19.2-2), libicu71 (= 71.1-3), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblsan0 (= 12.1.0-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libquadmath0 (= 12.1.0-2ubuntu1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsmartcols1 (= 2.38-4ubuntu1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-override-perl (= 0.09-3), libsystemd0 (= 249.11-0ubuntu4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4ubuntu1), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1610624145" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ soapaligner_2.20-5_amd64.deb ---------------------------- new Debian package, version 2.0. size 56726 bytes: control archive=1285 bytes. 1647 bytes, 31 lines control 402 bytes, 6 lines md5sums Package: soapaligner Version: 2.20-5 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 124 Depends: libc6 (>= 2.34) Section: science Priority: optional Homepage: https://web.archive.org/web/20190127081222/http://soap.genomics.org.cn/soapaligner.html Description: aligner of short reads of next generation sequencers This package addresses a common problem in bioinformatics that has become routine now also in clinical research: the assembly and comparison of the very long genomic DNA sequences from many short reads that the machines provide. . SOAPaligner/soap2 is a member of the Short Oligonucleotide Analysis Package (SOAP) and an updated version of SOAP software for short oligonucleotide alignment (soap v1). The new program features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes aligning one million single-end reads onto the human reference genome. Another remarkable improvement of SOAPaligner is that it now supports a wide range of the read length. . SOAPaligner/soap2 benefitted in time and space efficiency by a revolution in the basic data structures and algorithms used. The core algorithms and the indexing data structures (2way-BWT) are developed by the algorithms research group of the Department of Computer Science, the University of Hong Kong (T.W. Lam, Alan Tam, Simon Wong, Edward Wu and S.M. Yiu). drwxr-xr-x root/root 0 2021-01-14 11:35 ./ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/bin/ -rwxr-xr-x root/root 107560 2021-01-14 11:35 ./usr/bin/soap drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/doc/soapaligner/ -rw-r--r-- root/root 95 2010-05-05 04:26 ./usr/share/doc/soapaligner/NEWS.gz -rw-r--r-- root/root 357 2021-01-14 11:27 ./usr/share/doc/soapaligner/README.Debian -rw-r--r-- root/root 918 2021-01-14 11:35 ./usr/share/doc/soapaligner/changelog.Debian.gz -rw-r--r-- root/root 2330 2021-01-14 11:27 ./usr/share/doc/soapaligner/copyright drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/man/ drwxr-xr-x root/root 0 2021-01-14 11:35 ./usr/share/man/man1/ -rw-r--r-- root/root 2170 2021-01-14 11:35 ./usr/share/man/man1/soap.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 2448 Build-Time: 10 Distribution: kinetic Host Architecture: amd64 Install-Time: 12 Job: soapaligner_2.20-5.dsc Machine Architecture: amd64 Package: soapaligner Package-Time: 23 Source-Version: 2.20-5 Space: 2448 Status: successful Version: 2.20-5 -------------------------------------------------------------------------------- Finished at 2022-06-23T18:30:43Z Build needed 00:00:23, 2448k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24076597 Scanning for processes to kill in build PACKAGEBUILD-24076597