https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24058632 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-023 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 12:43:59 ntpdate[1799]: adjust time server 10.211.37.1 offset 0.000003 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058632 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24058632 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058632 Starting target for build PACKAGEBUILD-24058632 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058632 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24058632 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058632 Adding trusted keys to build-PACKAGEBUILD-24058632 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058632 Updating target for build PACKAGEBUILD-24058632 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [13.9 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5730 kB] Fetched 21.8 MB in 3s (6739 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 84 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 5300 kB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:20 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:27 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:29 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:34 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.7.9-4 [12.1 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] Get:68 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http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 2s (32.5 MB/s) 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Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24058632 amd64 kinetic -c chroot:build-PACKAGEBUILD-24058632 --arch=amd64 --dist=kinetic --nolog -A r-bioc-monocle_2.22.0-2.dsc Initiating build PACKAGEBUILD-24058632 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-023.buildd +==============================================================================+ | r-bioc-monocle 2.22.0-2 (amd64) Thu, 23 Jun 2022 12:44:21 +0000 | +==============================================================================+ Package: r-bioc-monocle Version: 2.22.0-2 Source Version: 2.22.0-2 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24058632/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-DKCqVV/resolver-cwSRWp' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-monocle_2.22.0-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-DKCqVV/r-bioc-monocle-2.22.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-monocle-DKCqVV' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-densityclust, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-densityclust, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [556 B] Get:5 copy:/<>/apt_archive ./ Packages [639 B] Fetched 2158 B in 0s (154 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph r-bioc-hsmmsinglecell r-bioc-limma r-bioc-rbgl r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-cli r-cran-cluster r-cran-colorspace r-cran-combinat r-cran-crayon r-cran-ddrtree r-cran-densityclust r-cran-digest r-cran-docopt r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastica r-cran-fnn r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gridextra r-cran-gtable r-cran-igraph r-cran-irlba r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proxy r-cran-purrr r-cran-qlcmatrix r-cran-r6 r-cran-rann r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-rtsne r-cran-runit r-cran-scales r-cran-slam r-cran-sparsesvd r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-11-multilib gfortran-11-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev icu-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-knitr r-cran-commonmark r-cran-sparsem r-cran-biasedurn r-cran-ellipse r-bioc-go.db r-cran-gplots r-cran-locfit r-bioc-org.hs.eg.db r-cran-statmod r-cran-remotes r-cran-rmarkdown r-cran-curl r-cran-callr r-cran-covr r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps r-cran-rstudioapi r-cran-shiny r-cran-whoami r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-unitizer r-cran-devtools r-cran-ggbeeswarm r-cran-readr r-cran-dbi r-cran-forcats r-cran-r.utils r-cran-rsqlite r-cran-waldo r-cran-ape r-cran-rgl r-cran-magick r-cran-sf r-cran-tidyverse r-cran-getopt r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-r.rsp r-cran-bit64 r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr r-cran-testthat r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools r-cran-inline r-cran-fs r-cran-usethis r-cran-dichromat r-cran-bench r-cran-blob r-cran-brio r-cran-evaluate r-cran-hms r-cran-pkgbuild r-cran-pkgload r-cran-tidyr r-cran-zeallot Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-mockery r-cran-bench r-cran-broom r-cran-callr r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-knitr r-cran-lobstr r-cran-rmarkdown r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite r-cran-tidyr r-cran-pkgload r-cran-ragg r-cran-hexbin r-cran-hmisc r-cran-interp r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-xml2 r-cran-lubridate r-cran-domc r-cran-abind r-cran-cba r-cran-bit64 r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-mockr r-cran-formattable r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph r-bioc-hsmmsinglecell r-bioc-limma r-bioc-rbgl r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-cli r-cran-cluster r-cran-colorspace r-cran-combinat r-cran-crayon r-cran-ddrtree r-cran-densityclust r-cran-digest r-cran-docopt r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastica r-cran-fnn r-cran-generics r-cran-ggplot2 r-cran-ggrepel r-cran-glue r-cran-gridextra r-cran-gtable r-cran-igraph r-cran-irlba r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pheatmap r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-proxy r-cran-purrr r-cran-qlcmatrix r-cran-r6 r-cran-rann r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-reshape2 r-cran-rlang r-cran-rtsne r-cran-runit r-cran-scales r-cran-slam r-cran-sparsesvd r-cran-stringi r-cran-stringr r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridis r-cran-viridislite r-cran-withr r-cran-xml sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 251 newly installed, 0 to remove and 0 not upgraded. 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http://ftpmaster.internal/ubuntu kinetic/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] Get:94 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtk8.6 amd64 8.6.12-1build1 [784 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxt6 amd64 1:1.2.1-1 [177 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-base-core amd64 4.2.0-1ubuntu1 [28.3 MB] Get:99 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgfortran-11-dev amd64 11.3.0-3ubuntu1 [839 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/main amd64 gfortran-11 amd64 11.3.0-3ubuntu1 [11.1 MB] Get:101 http://ftpmaster.internal/ubuntu kinetic/main amd64 gfortran amd64 4:11.2.0-1ubuntu1 [1182 B] Get:102 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblas-dev amd64 3.10.1-2 [163 kB] Get:103 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblapack-dev amd64 3.10.1-2 [4766 kB] Get:104 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses-dev amd64 6.3+20220423-2 [379 kB] Get:105 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses5-dev amd64 6.3+20220423-2 [792 B] Get:106 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline-dev amd64 8.1.2-1.2 [166 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-turbo8-dev amd64 2.1.2-0ubuntu1 [257 kB] Get:108 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg8-dev amd64 8c-2ubuntu10 [1476 B] Get:109 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-dev amd64 8c-2ubuntu10 [1472 B] Get:110 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre2-16-0 amd64 10.40-1 [210 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre2-32-0 amd64 10.40-1 [199 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre2-posix3 amd64 10.40-1 [6146 B] Get:113 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre2-dev amd64 10.40-1 [743 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre16-3 amd64 2:8.39-14 [164 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre32-3 amd64 2:8.39-14 [155 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcrecpp0v5 amd64 2:8.39-14 [16.5 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre3-dev amd64 2:8.39-14 [578 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9 [164 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng-dev amd64 1.6.37-5 [186 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbz2-dev amd64 1.0.8-5build1 [32.5 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma-dev amd64 5.2.5-2.1 [157 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/main amd64 icu-devtools amd64 71.1-3 [201 kB] Get:123 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu-dev amd64 71.1-3 [11.6 MB] Get:124 http://ftpmaster.internal/ubuntu kinetic/main amd64 pkg-config amd64 0.29.2-1ubuntu3 [48.2 kB] Get:125 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-base-dev all 4.2.0-1ubuntu1 [4304 B] Get:126 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfile-which-perl all 1.27-1 [14.3 kB] Get:127 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libswitch-perl all 2.17-3 [18.9 kB] Get:128 http://ftpmaster.internal/ubuntu kinetic/main amd64 libencode-locale-perl all 1.05-2 [12.2 kB] Get:129 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtimedate-perl all 2.3300-2 [34.0 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic/main amd64 libhttp-date-perl all 6.05-1 [9920 B] Get:131 http://ftpmaster.internal/ubuntu kinetic/main amd64 libio-html-perl all 1.004-3 [15.9 kB] Get:132 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu kinetic/main amd64 liburi-perl all 5.10-1 [78.8 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/main amd64 libhttp-message-perl all 6.37-1 [76.3 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/main amd64 libparams-util-perl amd64 1.102-1build3 [22.7 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-install-perl all 0.928-2 [10.2 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu kinetic/main amd64 libb-hooks-op-check-perl amd64 0.22-2 [10.5 kB] Get:139 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdynaloader-functions-perl all 0.003-2 [12.5 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu4 [14.9 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/main amd64 libparams-classify-perl amd64 0.015-2 [21.9 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtry-tiny-perl all 0.31-1 [21.8 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:145 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libscalar-list-utils-perl amd64 1:1.62-1 [57.3 kB] Get:146 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:147 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclass-load-perl all 0.25-1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclass-load-xs-perl amd64 0.10-2 [14.3 kB] Get:149 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-exporter-progressive-perl all 0.001013-2 [7248 B] Get:150 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdevel-globaldestruction-perl all 0.14-2 [6780 B] Get:151 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:152 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclass-c3-perl all 0.35-1 [19.0 kB] Get:153 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmro-compat-perl all 0.15-1 [11.7 kB] Get:154 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:155 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:156 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-exporter-perl all 0.988-1 [50.6 kB] Get:157 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libeval-closure-perl all 0.14-2 [10.8 kB] Get:158 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:159 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:160 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-name-perl amd64 0.26-1build3 [11.4 kB] Get:161 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libpackage-deprecationmanager-perl all 0.17-2 [15.8 kB] Get:162 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpackage-stash-xs-perl amd64 0.29-1build5 [19.4 kB] Get:163 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmoose-perl amd64 2.2200-1build1 [748 kB] Get:164 http://ftpmaster.internal/ubuntu kinetic/main amd64 libvariable-magic-perl amd64 0.62-1build5 [35.9 kB] Get:165 http://ftpmaster.internal/ubuntu kinetic/main amd64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:166 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-identify-perl amd64 0.14-2 [10.9 kB] Get:167 http://ftpmaster.internal/ubuntu kinetic/main amd64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcurl3-gnutls amd64 7.83.1-2 [280 kB] Get:169 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libwww-curl-perl amd64 4.17-7build2 [58.9 kB] Get:170 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:171 http://ftpmaster.internal/ubuntu kinetic/universe amd64 dh-r all 20210218ubuntu1 [36.4 kB] Get:172 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost1.74-dev amd64 1.74.0-14ubuntu4 [9616 kB] Get:173 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-dev amd64 1.74.0.3ubuntu7 [3490 B] Get:174 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-littler amd64 0.3.15-1 [90.5 kB] Get:175 http://ftpmaster.internal/ubuntu kinetic/universe amd64 littler all 0.3.15-1 [2264 B] Get:176 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-biocgenerics all 0.42.0-1 [586 kB] Get:177 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-biobase amd64 2.56.0-1 [2095 kB] Get:178 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-graph amd64 1.74.0-1 [1239 kB] Get:179 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-bh all 1.74.0-2 [5564 B] Get:180 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-rbgl amd64 1.72.0+dfsg-1 [771 kB] Get:181 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-xml amd64 3.99-0.10-1 [1700 kB] Get:182 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] Get:183 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rcurl amd64 1.98-1.6-1 [809 kB] Get:184 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-runit all 0.4.32-3 [283 kB] Get:185 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-biocmanager all 1.30.18+dfsg-1 [124 kB] Get:186 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-biocviews all 1.64.0-1 [582 kB] Get:187 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-hsmmsinglecell all 1.16.0-1 [16.7 MB] Get:188 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-limma amd64 3.52.1+dfsg-1 [1693 kB] Get:189 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-glue amd64 1.6.2-1 [148 kB] Get:190 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-cli amd64 3.3.0-1 [1122 kB] Get:191 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-cluster amd64 2.1.3-1 [543 kB] Get:192 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-colorspace amd64 2.0-3+dfsg-1 [1546 kB] Get:193 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-combinat all 0.0-8-7build1 [43.1 kB] Get:194 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-crayon all 1.5.1-1 [162 kB] Get:195 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-lattice amd64 0.20-45-3 [1130 kB] Get:196 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-matrix amd64 1.4-1-1 [4329 kB] Get:197 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-irlba amd64 2.3.5-1 [295 kB] Get:198 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-pkgkitten all 0.2.2-2 [25.3 kB] Get:199 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rcpp amd64 1.0.8.3-1 [2026 kB] Get:200 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rcppeigen amd64 0.3.3.9.2-1 [1207 kB] Get:201 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-ddrtree amd64 0.1.5-2 [154 kB] Get:202 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-fnn amd64 1.1.3.1-1 [122 kB] Get:203 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rtsne amd64 0.16-1 [106 kB] Get:204 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-digest amd64 0.6.29-1 [186 kB] Get:205 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-gtable all 0.3.0+dfsg-2build1 [138 kB] Get:206 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-isoband amd64 0.2.5-1 [1685 kB] Get:207 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-mass amd64 7.3-57-1 [1115 kB] Get:208 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-nlme amd64 3.1.158-1 [2210 kB] Get:209 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-mgcv amd64 1.8-40-1 [2979 kB] Get:210 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rlang amd64 1.0.2-1 [1579 kB] Get:211 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-farver amd64 2.1.0-1 [1329 kB] Get:212 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-labeling all 0.4.2-1 [62.6 kB] Get:213 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-lifecycle all 1.0.1-1 [105 kB] Get:214 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] Get:215 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:216 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] Get:217 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-viridislite all 0.4.0-2 [1087 kB] Get:218 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-scales all 1.2.0-2 [544 kB] Get:219 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] Get:220 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-fansi amd64 1.0.3-1 [617 kB] Get:221 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] Get:222 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-utf8 amd64 1.2.2-1 [142 kB] Get:223 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-vctrs amd64 0.4.1-2 [1222 kB] Get:224 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-pillar all 1.7.0+dfsg-1 [439 kB] Get:225 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:226 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-tibble amd64 3.1.7+dfsg-2 [505 kB] Get:227 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] Get:228 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-ggplot2 all 3.3.6+dfsg-1 [3226 kB] Get:229 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-ggrepel amd64 0.9.1-1 [375 kB] Get:230 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] Get:231 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-densityclust amd64 0.3.2-1 [99.4 kB] Get:232 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-docopt all 0.7.1-2 [249 kB] Get:233 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-generics all 0.1.2-1 [80.4 kB] Get:234 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-purrr amd64 0.3.4-1build1 [397 kB] Get:235 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-tidyselect amd64 1.1.2+dfsg-1 [194 kB] Get:236 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-dplyr amd64 1.0.9-1 [1213 kB] Get:237 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-fastica amd64 1.2-3-1 [42.5 kB] Get:238 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-igraph amd64 1.3.2-1 [3534 kB] Get:239 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-matrixstats amd64 0.62.0-1 [469 kB] Get:240 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] Get:241 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-plyr amd64 1.8.7-1 [833 kB] Get:242 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-proxy amd64 0.4-26-1 [226 kB] Get:243 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-slam amd64 0.1-50-1 [185 kB] Get:244 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-sparsesvd amd64 0.2-2 [41.3 kB] Get:245 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-qlcmatrix all 0.9.7-2 [3297 kB] Get:246 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rann amd64 2.6.1-1build2 [41.9 kB] Get:247 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-stringi amd64 1.7.6-1build2 [826 kB] Get:248 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-stringr all 1.4.0-2build1 [192 kB] Get:249 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] Get:250 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-vgam amd64 1.1-6-1 [7167 kB] Get:251 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-viridis all 0.6.2-1 [2759 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 188 MB in 7s (27.5 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... 13496 files and directories currently installed.) Preparing to unpack .../000-libmd0_1.0.4-1build1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1build1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../001-libbsd0_0.11.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.6-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../002-libelf1_0.187-1_amd64.deb ... Unpacking libelf1:amd64 (0.187-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../003-libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../004-libfribidi0_1.0.8-2ubuntu3.1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2ubuntu3.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../005-libglib2.0-0_2.72.2-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.72.2-2) ... 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Setting up gettext-base (0.21-6) ... Setting up libencode-locale-perl (1.05-2) ... Setting up file (1:5.41-4) ... Setting up libreadline-dev:amd64 (8.1.2-1.2) ... Setting up libjbig0:amd64 (2.1-3.1build3) ... Setting up libpcre2-16-0:amd64 (10.40-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-6ubuntu1) ... Setting up zip (3.0-12build2) ... Setting up libpackage-stash-xs-perl (0.29-1build5) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.40-1) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.7.5-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... 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Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu3) ... Setting up gettext (0.21-6) ... Setting up libpcre2-dev:amd64 (10.40-1) ... Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu3) ... Setting up libpcre3-dev:amd64 (2:8.39-14) ... Setting up libgfortran-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libpng-dev:amd64 (1.6.37-5) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu3) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu4) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:amd64 (0.1.29-1build1) ... Setting up liblapack-dev:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.3.0-3ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:amd64 (7.83.1-2) ... Setting up libx11-6:amd64 (2:1.7.5-1) ... Setting up libtiff5:amd64 (4.4.0~rc1-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.4ubuntu1) ... Setting up libmro-compat-perl (0.15-1) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu10) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libeval-closure-perl (0.14-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:amd64 (0.015-2) ... Setting up libpango-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu10) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up libcurl3-gnutls:amd64 (7.83.1-2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up xauth (1:1.1.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libxft2:amd64 (2.3.4-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:amd64 (8.6.12-1build1) ... Setting up libwww-curl-perl (4.17-7build2) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-1) ... Setting up r-base-core (4.2.0-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.1-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2build1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.158-1) ... Setting up r-cran-farver (2.1.0-1) ... Setting up r-cran-xml (3.99-0.10-1) ... Setting up libpackage-deprecationmanager-perl (0.17-2) ... Setting up r-cran-viridislite (0.4.0-2) ... Setting up r-cran-cluster (2.1.3-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2) ... Setting up r-cran-proxy (0.4-26-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-littler (0.3.15-1) ... Setting up r-cran-rcpp (1.0.8.3-1) ... 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Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.50.20220615-4ubuntu1 binutils-common_2.38.50.20220615-4ubuntu1 binutils-x86-64-linux-gnu_2.38.50.20220615-4ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-3ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-8ubuntu1 dctrl-tools_2.24-3build2 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 dh-autoreconf_20 dh-r_20210218ubuntu1 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.8ubuntu1 dpkg-dev_1.21.8ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 fontconfig_2.13.1-4.4ubuntu1 fontconfig-config_2.13.1-4.4ubuntu1 fonts-dejavu-core_2.37-2build1 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-3ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-3ubuntu1 gcc-11-base_11.3.0-3ubuntu1 gcc-12-base_12.1.0-2ubuntu1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-monocle Binary: r-bioc-monocle Architecture: any Version: 2.22.0-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/monocle/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-monocle Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-monocle.git Testsuite: autopkgtest, autopkgtest-pkg-r Testsuite-Triggers: r-cran-testthat Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-matrix, r-bioc-biobase, r-cran-ggplot2, r-cran-vgam, r-cran-ddrtree, r-cran-igraph, r-bioc-biocgenerics, r-bioc-hsmmsinglecell, r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba, r-cran-matrixstats, r-cran-densityclust, r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann, r-cran-rcpp Package-List: r-bioc-monocle deb gnu-r optional arch=any Checksums-Sha1: 8a459d577f457cdbe7876de3ad52c10162667f66 9497005 r-bioc-monocle_2.22.0.orig.tar.gz aaa3d1726dca3b3f1c38e5cba0934ab7a9932271 6244 r-bioc-monocle_2.22.0-2.debian.tar.xz Checksums-Sha256: 05bdd620d9c284a5b44ce9eabb3bcf54c1ed1258558136bacb5480e264606271 9497005 r-bioc-monocle_2.22.0.orig.tar.gz 4ba020a57f034c0175bead57696af3bf4638fffe094bbd34e46128411abcd748 6244 r-bioc-monocle_2.22.0-2.debian.tar.xz Files: aaf72312ada737f5ad5dad52c6aa5da9 9497005 r-bioc-monocle_2.22.0.orig.tar.gz 65a87495540d8a75093e2b699c3a59c4 6244 r-bioc-monocle_2.22.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmKGWnoSHG5pbGVzaEBk 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./r-bioc-monocle_2.22.0-2.dsc dpkg-source: info: extracting r-bioc-monocle in /<> dpkg-source: info: unpacking r-bioc-monocle_2.22.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-monocle_2.22.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying bioc-3.15.patch dpkg-source: info: applying drop-bioc-destiny-from-suggests.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24058632 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24058632 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24058632 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package r-bioc-monocle dpkg-buildpackage: info: source version 2.22.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-monocle/ -O--buildsystem=R I: R packages needed for DEP8: testthat I: R Package: monocle Version: 2.22.0 I: Building using R version 4.2.0-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Thu, 19 May 2022 20:21:42 +0530 mkdir -p /<>/debian/r-bioc-monocle/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-monocle/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 19 May 2022 20:21:42 +0530'" * installing *source* package ‘monocle’ ... ** using staged installation ** libs make[1]: Entering directory '/<>/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-DNFheM/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-DNFheM/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c clustering.cpp -o clustering.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -o monocle.so RcppExports.o clustering.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-monocle/usr/lib/R/site-library/00LOCK-r-bioc-monocle-2.22.0/00new/monocle/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (monocle) W: Ignoring specified R dependency: R (>= 2.10.0) I: Using r-cran-matrix for Depends:Matrix (>= 1.2-6) I: Using r-bioc-biobase for Depends:Biobase I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 1.0.0) I: Using r-cran-vgam for Depends:VGAM (>= 1.0-6) I: Using r-cran-ddrtree for Depends:DDRTree (>= 0.1.4) I: Using r-cran-testthat for Recommends:testthat I: Using r-cran-hmisc for Suggests:Hmisc I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-seurat for Suggests:Seurat I: Using r-bioc-scater for Suggests:scater I: Using r-cran-igraph for Imports:igraph (>= 1.0.1) I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-hsmmsinglecell for Imports:HSMMSingleCell (>= 0.101.5) I: Using r-cran-plyr for Imports:plyr I: Using r-cran-cluster for Imports:cluster I: Using r-cran-combinat for Imports:combinat I: Using r-cran-fastica for Imports:fastICA I: Using r-cran-irlba for Imports:irlba (>= 2.0.0) I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-densityclust for Imports:densityClust (>= 0.3) I: Using r-cran-rtsne for Imports:Rtsne I: Using r-cran-mass for Imports:MASS I: Using r-cran-reshape2 for Imports:reshape2 I: Using r-bioc-limma for Imports:limma I: Using r-cran-tibble for Imports:tibble I: Using r-cran-dplyr for Imports:dplyr I: Using r-cran-qlcmatrix for Imports:qlcMatrix I: Using r-cran-pheatmap for Imports:pheatmap I: Using r-cran-stringr for Imports:stringr I: Using r-cran-proxy for Imports:proxy I: Using r-cran-slam for Imports:slam I: Using r-cran-viridis for Imports:viridis I: Using r-bioc-biocviews for Imports:biocViews I: Using r-cran-rann for Imports:RANN (>= 2.5) I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0) I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.15 I: Use r-bioc-monocle as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R 1eb9872e4a8775ac127e44e49c46e7a7fe1350aa dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-monocle (in debian/r-bioc-monocle); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-monocle/DEBIAN/control, package r-bioc-monocle, directory debian/r-bioc-monocle pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-monocle ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-monocle' in '../r-bioc-monocle_2.22.0-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-monocle_2.22.0-2_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../r-bioc-monocle_2.22.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T12:45:24Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-monocle_2.22.0-2_amd64.changes: -------------------------------------- Format: 1.8 Date: Thu, 19 May 2022 20:21:42 +0530 Source: r-bioc-monocle Binary: r-bioc-monocle Built-For-Profiles: noudeb Architecture: amd64 Version: 2.22.0-2 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Nilesh Patra Description: r-bioc-monocle - clustering, differential expression, and trajectory analysis for Changes: r-bioc-monocle (2.22.0-2) unstable; urgency=medium . * Team upload. * Re-build for bioc-3.15 transition Checksums-Sha1: b02e518acfeeff7c7b2047bdb148c0ed50912e9f 13045 r-bioc-monocle_2.22.0-2_amd64.buildinfo f2390245f8c7c1722f85ba1cabb6744b1ade94a3 1482408 r-bioc-monocle_2.22.0-2_amd64.deb Checksums-Sha256: 3f054ea5a00ddfe4c60b28e3760b0d3807a131636a33fdef7ab7ef511f419b27 13045 r-bioc-monocle_2.22.0-2_amd64.buildinfo 925a51529f1f48d70834cbdbd7238ef0cb267ba1aa313901280268e1fd6e228c 1482408 r-bioc-monocle_2.22.0-2_amd64.deb Files: 99bc6c05b8f7c9f2ad93e39c75e8a0c9 13045 gnu-r optional r-bioc-monocle_2.22.0-2_amd64.buildinfo 08ae64658e7cd0dedc2f0064fec886ce 1482408 gnu-r optional r-bioc-monocle_2.22.0-2_amd64.deb /<>/r-bioc-monocle_2.22.0-2_amd64.changes.new could not be renamed to /<>/r-bioc-monocle_2.22.0-2_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-monocle Binary: r-bioc-monocle Architecture: amd64 Version: 2.22.0-2 Checksums-Md5: 08ae64658e7cd0dedc2f0064fec886ce 1482408 r-bioc-monocle_2.22.0-2_amd64.deb Checksums-Sha1: f2390245f8c7c1722f85ba1cabb6744b1ade94a3 1482408 r-bioc-monocle_2.22.0-2_amd64.deb Checksums-Sha256: 925a51529f1f48d70834cbdbd7238ef0cb267ba1aa313901280268e1fd6e228c 1482408 r-bioc-monocle_2.22.0-2_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 12:45:23 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.3.0-3ubuntu1), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2), libbinutils (= 2.38.50.20220615-4ubuntu1), libblas-dev (= 3.10.1-2), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0-14ubuntu4), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-4), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-2), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libcurl3-gnutls (= 7.83.1-2), libcurl4 (= 7.83.1-2), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdeflate0 (= 1.10-2), libdevel-callchecker-perl (= 0.008-1ubuntu4), libdevel-globaldestruction-perl (= 0.14-2), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libdynaloader-functions-perl (= 0.003-2), libelf1 (= 0.187-1), libencode-locale-perl (= 1.05-2), libeval-closure-perl (= 0.14-2), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfile-which-perl (= 1.27-1), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2ubuntu3.1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran-11-dev (= 11.3.0-3ubuntu1), libgfortran5 (= 12.1.0-2ubuntu1), libglib2.0-0 (= 2.72.2-2), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.19.2-2), libharfbuzz0b (= 2.7.4-1ubuntu4), libhogweed6 (= 3.7.3-1build2), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.37-1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 71.1-3), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libio-html-perl (= 1.004-3), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libjbig0 (= 2.1-3.1build3), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack-dev (= 3.10.1-2), liblapack3 (= 3.10.1-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblsan0 (= 12.1.0-2ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-1build1), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2200-1build1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libmro-compat-perl (= 0.15-1), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.3+20220423-2), libncurses5-dev (= 6.3+20220423-2), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpackage-deprecationmanager-perl (= 0.17-2), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.29-1build5), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpango-1.0-0 (= 1.50.7+ds-1), libpangocairo-1.0-0 (= 1.50.7+ds-1), libpangoft2-1.0-0 (= 1.50.7+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libparams-classify-perl (= 0.015-2), libparams-util-perl (= 1.102-1build3), libpcre16-3 (= 2:8.39-14), libpcre2-16-0 (= 10.40-1), libpcre2-32-0 (= 10.40-1), libpcre2-8-0 (= 10.40-1), libpcre2-dev (= 10.40-1), libpcre2-posix3 (= 10.40-1), libpcre3 (= 2:8.39-14), libpcre3-dev (= 2:8.39-14), libpcre32-3 (= 2:8.39-14), libpcrecpp0v5 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpixman-1-0 (= 0.40.0-1build4), libpng-dev (= 1.6.37-5), libpng16-16 (= 1.6.37-5), libpsl5 (= 0.21.0-1.2build2), libquadmath0 (= 12.1.0-2ubuntu1), libreadline-dev (= 8.1.2-1.2), libreadline8 (= 8.1.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libscalar-list-utils-perl (= 1:1.62-1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-2), libsub-identify-perl (= 0.14-2), libsub-install-perl (= 0.928-2), libsub-name-perl (= 0.26-1build3), libsub-override-perl (= 0.09-3), libswitch-perl (= 2.17-3), libsystemd0 (= 249.11-0ubuntu4), libtasn1-6 (= 4.18.0-4build1), libtcl8.6 (= 8.6.12+dfsg-1build1), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0~rc1-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtk8.6 (= 8.6.12-1build1), libtool (= 2.4.7-4), libtry-tiny-perl (= 0.31-1), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), liburi-perl (= 5.10-1), libuuid1 (= 2.38-4ubuntu1), libvariable-magic-perl (= 0.62-1build5), libwebp7 (= 1.2.2-2), libwww-curl-perl (= 4.17-7build2), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.14-3ubuntu3), libxcb-shm0 (= 1.14-3ubuntu3), libxcb1 (= 1.14-3ubuntu3), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.4-1), libxml2 (= 2.9.14+dfsg-1), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), littler (= 0.3.15-1), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), openssl (= 3.0.3-5ubuntu3), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.2.0-1ubuntu1), r-base-dev (= 4.2.0-1ubuntu1), r-bioc-biobase (= 2.56.0-1), r-bioc-biocgenerics (= 0.42.0-1), r-bioc-biocviews (= 1.64.0-1), r-bioc-graph (= 1.74.0-1), r-bioc-hsmmsinglecell (= 1.16.0-1), r-bioc-limma (= 3.52.1+dfsg-1), r-bioc-rbgl (= 1.72.0+dfsg-1), r-cran-bh (= 1.74.0-2), r-cran-biocmanager (= 1.30.18+dfsg-1), r-cran-bitops (= 1.0-7-1), r-cran-cli (= 3.3.0-1), r-cran-cluster (= 2.1.3-1), r-cran-colorspace (= 2.0-3+dfsg-1), r-cran-combinat (= 0.0-8-7build1), r-cran-crayon (= 1.5.1-1), 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r-cran-plyr (= 1.8.7-1), r-cran-proxy (= 0.4-26-1), r-cran-purrr (= 0.3.4-1build1), r-cran-qlcmatrix (= 0.9.7-2), r-cran-r6 (= 2.5.1-1), r-cran-rann (= 2.6.1-1build2), r-cran-rcolorbrewer (= 1.1-3-1build1), r-cran-rcpp (= 1.0.8.3-1), r-cran-rcppeigen (= 0.3.3.9.2-1), r-cran-rcurl (= 1.98-1.6-1), r-cran-reshape2 (= 1.4.4-2build1), r-cran-rlang (= 1.0.2-1), r-cran-rtsne (= 0.16-1), r-cran-runit (= 0.4.32-3), r-cran-scales (= 1.2.0-2), r-cran-slam (= 0.1-50-1), r-cran-sparsesvd (= 0.2-2), r-cran-stringi (= 1.7.6-1build2), r-cran-stringr (= 1.4.0-2build1), r-cran-tibble (= 3.1.7+dfsg-2), r-cran-tidyselect (= 1.1.2+dfsg-1), r-cran-utf8 (= 1.2.2-1), r-cran-vctrs (= 0.4.1-2), r-cran-vgam (= 1.1-6-1), r-cran-viridis (= 0.6.2-1), r-cran-viridislite (= 0.4.0-2), r-cran-withr (= 2.5.0-1), r-cran-xml (= 3.99-0.10-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), tzdata (= 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Maintainers Installed-Size: 1754 Depends: r-base-core (>= 4.2.0-1ubuntu1), r-api-4.0, r-api-bioc-3.15, r-cran-matrix (>= 1.2-6), r-bioc-biobase, r-cran-ggplot2 (>= 1.0.0), r-cran-vgam (>= 1.0-6), r-cran-ddrtree (>= 0.1.4), r-cran-igraph (>= 1.0.1), r-bioc-biocgenerics, r-bioc-hsmmsinglecell (>= 0.101.5), r-cran-plyr, r-cran-cluster, r-cran-combinat, r-cran-fastica, r-cran-irlba (>= 2.0.0), r-cran-matrixstats, r-cran-densityclust (>= 0.3), r-cran-rtsne, r-cran-mass, r-cran-reshape2, r-bioc-limma, r-cran-tibble, r-cran-dplyr, r-cran-qlcmatrix, r-cran-pheatmap, r-cran-stringr, r-cran-proxy, r-cran-slam, r-cran-viridis, r-bioc-biocviews, r-cran-rann (>= 2.5), r-cran-rcpp (>= 0.12.0), libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Recommends: r-cran-testthat Suggests: r-cran-hmisc, r-cran-knitr, r-cran-seurat, r-bioc-scater Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/monocle/ Description: clustering, differential expression, and trajectory analysis for RNA-Seq Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 14868 Build-Time: 36 Distribution: kinetic Host Architecture: amd64 Install-Time: 26 Job: r-bioc-monocle_2.22.0-2.dsc Machine Architecture: amd64 Package: r-bioc-monocle Package-Time: 63 Source-Version: 2.22.0-2 Space: 14868 Status: successful Version: 2.22.0-2 -------------------------------------------------------------------------------- Finished at 2022-06-23T12:45:24Z Build needed 00:01:03, 14868k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058632 Scanning for processes to kill in build 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