https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24058347 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-023 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 12:37:57 ntpdate[1811]: adjust time server 10.211.37.1 offset -0.000127 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058347 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24058347 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058347 Starting target for build PACKAGEBUILD-24058347 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058347 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24058347 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058347 Adding trusted keys to build-PACKAGEBUILD-24058347 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058347 Updating target for build PACKAGEBUILD-24058347 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [13.9 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5730 kB] Fetched 21.8 MB in 5s (4210 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dash dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 84 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.8 MB of archives. After this operation, 5300 kB of additional disk space will be used. Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:23 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:30 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:32 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:34 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 dash amd64 0.5.11+git20210903+057cd650a4ed-8ubuntu1 [88.2 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.7.9-4 [12.1 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] 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http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.8 MB in 3s (23.3 MB/s) 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Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for debianutils (5.7-0.2) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24058347 amd64 kinetic -c chroot:build-PACKAGEBUILD-24058347 --arch=amd64 --dist=kinetic --nolog -A r-bioc-bioccheck_1.32.0+dfsg-1.dsc Initiating build PACKAGEBUILD-24058347 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-023.buildd +==============================================================================+ | r-bioc-bioccheck 1.32.0+dfsg-1 (amd64) Thu, 23 Jun 2022 12:38:45 +0000 | +==============================================================================+ Package: r-bioc-bioccheck Version: 1.32.0+dfsg-1 Source Version: 1.32.0+dfsg-1 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24058347/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-bioccheck-jZicOp/resolver-QOkJ33' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-bioccheck_1.32.0+dfsg-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/r-bioc-bioccheck-jZicOp/r-bioc-bioccheck-1.32.0+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-bioccheck-jZicOp' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocviews, r-cran-biocmanager, r-cran-stringdist, r-bioc-graph, r-cran-httr, r-cran-codetools, r-cran-knitr, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocviews, r-cran-biocmanager, r-cran-stringdist, r-bioc-graph, r-cran-httr, r-cran-codetools, r-cran-knitr, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [430 B] Get:5 copy:/<>/apt_archive ./ Packages [510 B] Fetched 1897 B in 0s (71.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db node-normalize.css pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph r-bioc-rbgl r-cran-askpass r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-codetools r-cran-curl r-cran-evaluate r-cran-glue r-cran-highr r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-magrittr r-cran-mime r-cran-openssl r-cran-r6 r-cran-rcurl r-cran-runit r-cran-stringdist r-cran-stringi r-cran-stringr r-cran-sys r-cran-xfun r-cran-xml r-cran-yaml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-11-multilib gfortran-11-doc libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less www-browser libjs-html5shiv libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-commonmark r-cran-sparsem r-cran-cluster r-cran-remotes r-cran-rmarkdown r-cran-withr r-cran-covr r-cran-ggplot2 r-cran-lattice r-cran-crayon r-cran-dbi r-cran-dplyr r-cran-forcats r-cran-r.utils r-cran-rsqlite r-cran-waldo r-cran-markdown r-cran-httpuv r-cran-jpeg r-cran-png r-cran-readr r-cran-xml2 r-cran-vctrs r-cran-r.rsp r-cran-sf r-cran-formatr r-cran-digest r-cran-rgl r-cran-htmlwidgets r-cran-webshot r-cran-reticulate r-cran-magick r-cran-sass r-cran-ragg r-cran-rlang r-cran-tinytest r-cran-rstudioapi r-cran-tinytex r-cran-htmltools Recommended packages: devscripts cme git-buildpackage curl | wget | lynx bzip2-doc libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl javascript-common libldap-common libdevel-partialdump-perl libpng-tools publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-httpuv r-cran-webutils r-cran-vctrs r-cran-testit r-cran-sp r-cran-tikzdevice r-cran-rmarkdown r-cran-tinytex r-cran-tibble node-highlight.js r-cran-crayon r-cran-sodium r-cran-htmltools r-cran-htmlwidgets libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils dctrl-tools debhelper debugedit dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core fonts-glyphicons-halflings fonts-mathjax gettext gettext-base gfortran gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl libdevel-overloadinfo-perl libdevel-stacktrace-perl libdist-checkconflicts-perl libdw1 libdynaloader-functions-perl libelf1 libencode-locale-perl libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax liblapack-dev liblapack3 libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libreadline-dev librtmp1 libsasl2-2 libsasl2-modules-db libscalar-list-utils-perl libsigsegv2 libsm6 libssh-4 libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db node-normalize.css pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocviews r-bioc-graph r-bioc-rbgl r-cran-askpass r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-codetools r-cran-curl r-cran-evaluate r-cran-glue r-cran-highr r-cran-httr r-cran-jsonlite r-cran-knitr r-cran-magrittr r-cran-mime r-cran-openssl r-cran-r6 r-cran-rcurl r-cran-runit r-cran-stringdist r-cran-stringi r-cran-stringr r-cran-sys r-cran-xfun r-cran-xml r-cran-yaml sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 211 newly installed, 0 to remove and 0 not upgraded. Need to get 127 MB of archives. After this operation, 503 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [726 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmd0 amd64 1.0.4-1build1 [23.0 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbsd0 amd64 0.11.6-1 [44.5 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libelf1 amd64 0.187-1 [51.3 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 libexpat1 amd64 2.4.8-1 [90.6 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfribidi0 amd64 1.0.8-2ubuntu3.1 [26.1 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libglib2.0-0 amd64 2.72.2-2 [1435 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu71 amd64 71.1-3 [10.6 MB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2 amd64 2.9.14+dfsg-1 [756 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 ucf all 3.0043 [56.1 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 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libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdw1 amd64 0.187-1 [247 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 debugedit amd64 1:5.0-4build1 [47.2 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 dwz amd64 0.14-1build2 [105 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext amd64 0.21-6 [862 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 debhelper all 13.7.1ubuntu1 [940 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 zip amd64 3.0-12build2 [176 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 unzip amd64 6.0-26ubuntu3 [174 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpaper1 amd64 1.1.28build2 [13.8 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpaper-utils amd64 1.1.28build2 [8674 B] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 xdg-utils all 1.1.3-4.1ubuntu2 [62.0 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblas3 amd64 3.10.1-2 [228 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbrotli1 amd64 1.0.9-2build6 [315 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [387 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfontconfig1 amd64 2.13.1-4.4ubuntu1 [129 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpixman-1-0 amd64 0.40.0-1build4 [264 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-render0 amd64 1.14-3ubuntu3 [16.4 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-shm0 amd64 1.14-3ubuntu3 [5780 B] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcairo2 amd64 1.16.0-5ubuntu2 [628 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-6ubuntu1 [20.5 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsasl2-2 amd64 2.1.28+dfsg-6ubuntu1 [55.9 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 libldap-2.5-0 amd64 2.5.12+dfsg-2ubuntu1 [180 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssh-4 amd64 0.9.6-2build1 [184 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcurl4 amd64 7.83.1-2 [285 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-turbo8 amd64 2.1.2-0ubuntu1 [134 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg8 amd64 8c-2ubuntu10 [2264 B] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgfortran5 amd64 12.1.0-2ubuntu1 [875 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblapack3 amd64 3.10.1-2 [2492 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 fontconfig amd64 2.13.1-4.4ubuntu1 [176 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgraphite2-3 amd64 1.3.14-1build2 [71.3 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu4 [352 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 libthai-data all 0.1.29-1build1 [162 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdatrie1 amd64 0.2.13-2 [19.9 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 libthai0 amd64 0.1.29-1build1 [19.2 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpango-1.0-0 amd64 1.50.7+ds-1 [224 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpangoft2-1.0-0 amd64 1.50.7+ds-1 [52.0 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpangocairo-1.0-0 amd64 1.50.7+ds-1 [38.2 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtcl8.6 amd64 8.6.12+dfsg-1build1 [990 kB] Get:87 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdeflate0 amd64 1.10-2 [70.9 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjbig0 amd64 2.1-3.1build3 [28.9 kB] Get:89 http://ftpmaster.internal/ubuntu kinetic/main amd64 libwebp7 amd64 1.2.2-2 [206 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtiff5 amd64 4.4.0~rc1-1 [183 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxft2 amd64 2.3.4-1 [41.8 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] Get:94 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtk8.6 amd64 8.6.12-1build1 [784 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxt6 amd64 1:1.2.1-1 [177 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-base-core amd64 4.2.0-1ubuntu1 [28.3 MB] Get:99 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgfortran-11-dev amd64 11.3.0-3ubuntu1 [839 kB] Get:100 http://ftpmaster.internal/ubuntu kinetic/main amd64 gfortran-11 amd64 11.3.0-3ubuntu1 [11.1 MB] Get:101 http://ftpmaster.internal/ubuntu kinetic/main amd64 gfortran amd64 4:11.2.0-1ubuntu1 [1182 B] 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[199 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre2-posix3 amd64 10.40-1 [6146 B] Get:113 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre2-dev amd64 10.40-1 [743 kB] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre16-3 amd64 2:8.39-14 [164 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre32-3 amd64 2:8.39-14 [155 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcrecpp0v5 amd64 2:8.39-14 [16.5 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcre3-dev amd64 2:8.39-14 [578 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu9 [164 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng-dev amd64 1.6.37-5 [186 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbz2-dev amd64 1.0.8-5build1 [32.5 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma-dev amd64 5.2.5-2.1 [157 kB] 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Get:132 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.5 kB] Get:133 http://ftpmaster.internal/ubuntu kinetic/main amd64 liburi-perl all 5.10-1 [78.8 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/main amd64 libhttp-message-perl all 6.37-1 [76.3 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/main amd64 libparams-util-perl amd64 1.102-1build3 [22.7 kB] Get:136 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-install-perl all 0.928-2 [10.2 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdata-optlist-perl all 0.112-1 [11.0 kB] Get:138 http://ftpmaster.internal/ubuntu kinetic/main amd64 libb-hooks-op-check-perl amd64 0.22-2 [10.5 kB] Get:139 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdynaloader-functions-perl all 0.003-2 [12.5 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu4 [14.9 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/main amd64 libparams-classify-perl amd64 0.015-2 [21.9 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmodule-runtime-perl all 0.016-2 [16.4 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtry-tiny-perl all 0.31-1 [21.8 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmodule-implementation-perl all 0.09-2 [12.0 kB] Get:145 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libscalar-list-utils-perl amd64 1:1.62-1 [57.3 kB] Get:146 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpackage-stash-perl all 0.40-1 [19.5 kB] Get:147 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclass-load-perl all 0.25-1 [13.5 kB] Get:148 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclass-load-xs-perl amd64 0.10-2 [14.3 kB] Get:149 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-exporter-progressive-perl all 0.001013-2 [7248 B] Get:150 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdevel-globaldestruction-perl all 0.14-2 [6780 B] Get:151 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libalgorithm-c3-perl all 0.11-1 [11.0 kB] Get:152 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libclass-c3-perl all 0.35-1 [19.0 kB] Get:153 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmro-compat-perl all 0.15-1 [11.7 kB] Get:154 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdevel-overloadinfo-perl all 0.007-1 [7422 B] Get:155 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdevel-stacktrace-perl all 2.0400-1 [22.7 kB] Get:156 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-exporter-perl all 0.988-1 [50.6 kB] Get:157 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libeval-closure-perl all 0.14-2 [10.8 kB] Get:158 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libdist-checkconflicts-perl all 0.11-2 [9942 B] Get:159 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmodule-runtime-conflicts-perl all 0.003-2 [6956 B] Get:160 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-name-perl amd64 0.26-1build3 [11.4 kB] Get:161 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libpackage-deprecationmanager-perl all 0.17-2 [15.8 kB] Get:162 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpackage-stash-xs-perl amd64 0.29-1build5 [19.4 kB] Get:163 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmoose-perl amd64 2.2200-1build1 [748 kB] Get:164 http://ftpmaster.internal/ubuntu kinetic/main amd64 libvariable-magic-perl amd64 0.62-1build5 [35.9 kB] Get:165 http://ftpmaster.internal/ubuntu kinetic/main amd64 libb-hooks-endofscope-perl all 0.26-1 [17.8 kB] Get:166 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-identify-perl amd64 0.14-2 [10.9 kB] Get:167 http://ftpmaster.internal/ubuntu kinetic/main amd64 libnamespace-clean-perl all 0.27-2 [14.0 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcurl3-gnutls amd64 7.83.1-2 [280 kB] Get:169 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libwww-curl-perl amd64 4.17-7build2 [58.9 kB] Get:170 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libwww-curl-simple-perl all 0.100191-2 [10.9 kB] Get:171 http://ftpmaster.internal/ubuntu kinetic/universe amd64 dh-r all 20210218ubuntu1 [36.4 kB] Get:172 http://ftpmaster.internal/ubuntu kinetic/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [117 kB] Get:173 http://ftpmaster.internal/ubuntu kinetic/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:174 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost1.74-dev amd64 1.74.0-14ubuntu4 [9616 kB] Get:175 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-dev amd64 1.74.0.3ubuntu7 [3490 B] Get:176 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-bootstrap all 3.4.1+dfsg-2 [124 kB] Get:177 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] Get:178 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [321 kB] Get:179 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] Get:180 http://ftpmaster.internal/ubuntu kinetic/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] Get:181 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-biocgenerics all 0.42.0-1 [586 kB] Get:182 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-biobase amd64 2.56.0-1 [2095 kB] Get:183 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-graph amd64 1.74.0-1 [1239 kB] Get:184 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-bh all 1.74.0-2 [5564 B] Get:185 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-rbgl amd64 1.72.0+dfsg-1 [771 kB] Get:186 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-xml amd64 3.99-0.10-1 [1700 kB] Get:187 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] Get:188 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-rcurl amd64 1.98-1.6-1 [809 kB] Get:189 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-runit all 0.4.32-3 [283 kB] Get:190 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-biocmanager all 1.30.18+dfsg-1 [124 kB] Get:191 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-bioc-biocviews all 1.64.0-1 [582 kB] Get:192 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-sys amd64 3.4-1 [43.0 kB] Get:193 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-askpass amd64 1.1-2 [22.4 kB] Get:194 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-codetools all 0.2-18-1 [90.8 kB] Get:195 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-curl amd64 4.3.2+dfsg-1 [155 kB] Get:196 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-evaluate all 0.15-1 [85.1 kB] Get:197 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-glue amd64 1.6.2-1 [148 kB] Get:198 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-xfun amd64 0.31-1 [373 kB] Get:199 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-highr all 0.9+dfsg-1 [38.8 kB] Get:200 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-jsonlite amd64 1.8.0+dfsg-1 [436 kB] Get:201 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] Get:202 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-openssl amd64 2.0.2+dfsg-1 [391 kB] Get:203 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] Get:204 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-httr all 1.4.3-1 [479 kB] Get:205 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] Get:206 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-stringi amd64 1.7.6-1build2 [826 kB] Get:207 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-stringr all 1.4.0-2build1 [192 kB] Get:208 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-yaml amd64 2.3.5-1 [108 kB] Get:209 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Get:210 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-knitr all 1.39+dfsg-1 [874 kB] Get:211 http://ftpmaster.internal/ubuntu kinetic/universe amd64 r-cran-stringdist amd64 0.9.8-1 [556 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 127 MB in 6s (21.3 MB/s) Selecting previously unselected package libmd0:amd64. (Reading database ... 13496 files and directories currently installed.) Preparing to unpack .../000-libmd0_1.0.4-1build1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1build1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../001-libbsd0_0.11.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.6-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../002-libelf1_0.187-1_amd64.deb ... Unpacking libelf1:amd64 (0.187-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../003-libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../004-libfribidi0_1.0.8-2ubuntu3.1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2ubuntu3.1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../005-libglib2.0-0_2.72.2-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.72.2-2) ... 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Setting up unzip (6.0-26ubuntu3) ... Setting up libdebhelper-perl (13.7.1ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build6) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libtry-tiny-perl (0.31-1) ... Setting up libnghttp2-14:amd64 (1.47.0-1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up libdeflate0:amd64 (1.10-2) ... Setting up gettext-base (0.21-6) ... Setting up libencode-locale-perl (1.05-2) ... Setting up file (1:5.41-4) ... Setting up libreadline-dev:amd64 (8.1.2-1.2) ... Setting up libjbig0:amd64 (2.1-3.1build3) ... Setting up libpcre2-16-0:amd64 (10.40-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-6ubuntu1) ... Setting up zip (3.0-12build2) ... Setting up libpackage-stash-xs-perl (0.29-1build5) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.40-1) ... Setting up libblas3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libswitch-perl (2.17-3) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.7.5-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build4) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ... Setting up libfribidi0:amd64 (1.0.8-2ubuntu3.1) ... Setting up libpcre32-3:amd64 (2:8.39-14) ... Setting up libvariable-magic-perl (0.62-1build5) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:amd64 (8.6.12+dfsg-1build1) ... Setting up autopoint (0.21-6) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2) ... Setting up icu-devtools (71.1-3) ... Setting up pkg-config (0.29.2-1ubuntu3) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:amd64 (2.1.2-0ubuntu1) ... Setting up libparams-util-perl (1.102-1build3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-6ubuntu1) ... Setting up libssh-4:amd64 (0.9.6-2build1) ... Setting up libgfortran5:amd64 (12.1.0-2ubuntu1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libwebp7:amd64 (1.2.2-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:amd64 (5.2.5-2.1) ... Setting up libsub-name-perl (0.26-1build3) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu9) ... Setting up libpcre2-posix3:amd64 (10.40-1) ... Setting up libmd0:amd64 (1.0.4-1build1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up libncurses5-dev:amd64 (6.3+20220423-2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu4) ... Setting up libthai-data (0.1.29-1build1) ... Setting up libdevel-globaldestruction-perl (0.14-2) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libboost-dev:amd64 (1.74.0.3ubuntu7) ... Setting up libjs-jquery (3.6.0+dfsg+~3.5.13-1) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up libelf1:amd64 (0.187-1) ... Setting up libicu-dev:amd64 (71.1-3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up xdg-utils (1.1.3-4.1ubuntu2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.10-1) ... Setting up libblas-dev:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3build2) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libbz2-dev:amd64 (1.0.8-5build1) ... Setting up libjpeg8:amd64 (8c-2ubuntu10) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libpaper1:amd64 (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1build2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libdw1:amd64 (0.187-1) ... Setting up libjpeg-turbo8-dev:amd64 (2.1.2-0ubuntu1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Setting up liblapack3:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu3) ... Setting up gettext (0.21-6) ... Setting up libpcre2-dev:amd64 (10.40-1) ... Setting up libtool (2.4.7-4) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu3) ... Setting up libpcre3-dev:amd64 (2:8.39-14) ... Setting up libgfortran-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libpng-dev:amd64 (1.6.37-5) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu3) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libclass-c3-perl (0.35-1) ... Setting up libdevel-callchecker-perl (0.008-1ubuntu4) ... Setting up libldap-2.5-0:amd64 (2.5.12+dfsg-2ubuntu1) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:amd64 (0.1.29-1build1) ... Setting up liblapack-dev:amd64 (3.10.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libdata-optlist-perl (0.112-1) ... Setting up gfortran-11 (11.3.0-3ubuntu1) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up libcurl4:amd64 (7.83.1-2) ... Setting up libx11-6:amd64 (2:1.7.5-1) ... Setting up libtiff5:amd64 (4.4.0~rc1-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.4ubuntu1) ... Setting up libmro-compat-perl (0.15-1) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu10) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libxmuu1:amd64 (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libeval-closure-perl (0.14-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-4.4ubuntu1) ... Regenerating fonts cache... done. Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:amd64 (0.015-2) ... Setting up libpango-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu10) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up libcurl3-gnutls:amd64 (7.83.1-2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up gfortran (4:11.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up xauth (1:1.1.1-1) ... Setting up libxss1:amd64 (1:1.2.3-1build2) ... Setting up libpangoft2-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.7+ds-1) ... Setting up libxft2:amd64 (2.3.4-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:amd64 (8.6.12-1build1) ... Setting up libwww-curl-perl (4.17-7build2) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-1) ... Setting up r-base-core (4.2.0-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-xml (3.99-0.10-1) ... Setting up libpackage-deprecationmanager-perl (0.17-2) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-curl (4.3.2+dfsg-1) ... Setting up r-cran-codetools (0.2-18-1) ... Setting up r-bioc-biocgenerics (0.42.0-1) ... Setting up r-base-dev (4.2.0-1ubuntu1) ... Setting up r-cran-xfun (0.31-1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-mime (0.12-1) ... Setting up libmoose-perl:amd64 (2.2200-1build1) ... Setting up r-cran-yaml (2.3.5-1) ... Setting up r-cran-evaluate (0.15-1) ... Setting up r-cran-highr (0.9+dfsg-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-biocmanager (1.30.18+dfsg-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-bioc-biobase (2.56.0-1) ... Setting up r-cran-jsonlite (1.8.0+dfsg-1) ... Setting up r-cran-stringi (1.7.6-1build2) ... Setting up r-cran-stringdist (0.9.8-1) ... Setting up r-cran-runit (0.4.32-3) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-rcurl (1.98-1.6-1) ... Setting up r-bioc-graph (1.74.0-1) ... Setting up r-bioc-rbgl (1.72.0+dfsg-1) ... Setting up r-cran-openssl (2.0.2+dfsg-1) ... Setting up r-bioc-biocviews (1.64.0-1) ... Setting up r-cran-stringr (1.4.0-2build1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-cran-httr (1.4.3-1) ... Setting up r-cran-knitr (1.39+dfsg-1) ... Setting up dh-r (20210218ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-bioccheck Binary: r-bioc-bioccheck Architecture: all Version: 1.32.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Dylan Aïssi Homepage: https://bioconductor.org/packages/BiocCheck/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-bioccheck Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-bioccheck.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocviews, r-cran-biocmanager, r-cran-stringdist, r-bioc-graph, r-cran-httr, r-cran-codetools, r-cran-knitr Package-List: r-bioc-bioccheck deb gnu-r optional arch=all Checksums-Sha1: 6c26c12cbd717d1f1c5577571e1c02f800597507 3983536 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Fix_dep8.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24058347 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24058347 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24058347 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package r-bioc-bioccheck dpkg-buildpackage: info: source version 1.32.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-bioccheck/ -O--buildsystem=R I: R Package: BiocCheck Version: 1.32.0 I: Building using R version 4.2.0-1ubuntu1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sat, 14 May 2022 08:39:44 +0200 mkdir -p /<>/r-bioc-bioccheck-1.32.0\+dfsg/debian/r-bioc-bioccheck/usr/lib/R/site-library R CMD INSTALL -l /<>/r-bioc-bioccheck-1.32.0\+dfsg/debian/r-bioc-bioccheck/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 14 May 2022 08:39:44 +0200'" * installing *source* package ‘BiocCheck’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocCheck) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304. W: Ignoring specified R dependency: R (>= 4.2.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-bioc-biobase for Suggests:Biobase I: Using r-cran-jsonlite for Suggests:jsonlite I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-downloader for Suggests:downloader I: Using r-cran-devtools for Suggests:devtools (>= 1.4.1) I: Using r-cran-usethis for Suggests:usethis I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-biocviews for Imports:biocViews (>= 1.33.7) I: Using r-cran-biocmanager for Imports:BiocManager I: Using r-cran-stringdist for Imports:stringdist I: Using r-bioc-graph for Imports:graph I: Using r-cran-httr for Imports:httr I: Using r-cran-codetools for Imports:codetools I: Using r-cran-knitr for Imports:knitr I: BioConductor API version: r-api-bioc-3.15 I: Use r-bioc-bioccheck as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R INFO: pkgstriptranslations version 149 pkgstriptranslations: processing r-bioc-bioccheck (in debian/r-bioc-bioccheck); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-bioccheck/DEBIAN/control, package r-bioc-bioccheck, directory debian/r-bioc-bioccheck pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-bioccheck ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-bioccheck' in '../r-bioc-bioccheck_1.32.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-bioccheck_1.32.0+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../r-bioc-bioccheck_1.32.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T12:39:43Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-bioccheck_1.32.0+dfsg-1_amd64.changes: --------------------------------------------- Format: 1.8 Date: Sat, 14 May 2022 08:39:44 +0200 Source: r-bioc-bioccheck Binary: r-bioc-bioccheck Built-For-Profiles: noudeb Architecture: all Version: 1.32.0+dfsg-1 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-bioccheck - Bioconductor-specific package checks Changes: r-bioc-bioccheck (1.32.0+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 1c7025bbbd52f98b452d5b5dea37e8f36961c886 4406108 r-bioc-bioccheck_1.32.0+dfsg-1_all.deb bbb0f2a20dcf5761a05e348cf89dbd49a89eae61 11902 r-bioc-bioccheck_1.32.0+dfsg-1_amd64.buildinfo Checksums-Sha256: 1060c25a431d1e60672e1ab9ccd696a8f81ff3707a3d7d5189cfe25c614320ad 4406108 r-bioc-bioccheck_1.32.0+dfsg-1_all.deb 4a3814363d4bdc7c66edacbd75d4b74049e270c177ca53343d66665b947770ce 11902 r-bioc-bioccheck_1.32.0+dfsg-1_amd64.buildinfo Files: 2fd03f52a8d1b64635c1ce09a4d463cf 4406108 gnu-r optional r-bioc-bioccheck_1.32.0+dfsg-1_all.deb 6bc45375aa4d2fd103ee147861d4dbd0 11902 gnu-r optional r-bioc-bioccheck_1.32.0+dfsg-1_amd64.buildinfo /<>/r-bioc-bioccheck_1.32.0+dfsg-1_amd64.changes.new could not be renamed to /<>/r-bioc-bioccheck_1.32.0+dfsg-1_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: r-bioc-bioccheck Binary: r-bioc-bioccheck Architecture: all Version: 1.32.0+dfsg-1 Checksums-Md5: 2fd03f52a8d1b64635c1ce09a4d463cf 4406108 r-bioc-bioccheck_1.32.0+dfsg-1_all.deb Checksums-Sha1: 1c7025bbbd52f98b452d5b5dea37e8f36961c886 4406108 r-bioc-bioccheck_1.32.0+dfsg-1_all.deb Checksums-Sha256: 1060c25a431d1e60672e1ab9ccd696a8f81ff3707a3d7d5189cfe25c614320ad 4406108 r-bioc-bioccheck_1.32.0+dfsg-1_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 12:39:42 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-8ubuntu1), dctrl-tools (= 2.24-3build2), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), dh-autoreconf (= 20), dh-r (= 20210218ubuntu1), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), fontconfig (= 2.13.1-4.4ubuntu1), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2), fonts-mathjax (= 2.7.9+dfsg-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), gfortran (= 4:11.2.0-1ubuntu1), gfortran-11 (= 11.3.0-3ubuntu1), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), icu-devtools (= 71.1-3), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libalgorithm-c3-perl (= 0.11-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3ubuntu1), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libb-hooks-endofscope-perl (= 0.26-1), libb-hooks-op-check-perl (= 0.22-2), libbinutils (= 2.38.50.20220615-4ubuntu1), libblas-dev (= 3.10.1-2), libblas3 (= 3.10.1-2), libblkid1 (= 2.38-4ubuntu1), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0-14ubuntu4), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libbz2-dev (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-4), libcap2 (= 1:2.44-1build3), libcc1-0 (= 12.1.0-2ubuntu1), libclass-c3-perl (= 0.35-1), libclass-load-perl (= 0.25-1), libclass-load-xs-perl (= 0.10-2), libcom-err2 (= 1.46.5-2ubuntu2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libcurl3-gnutls (= 7.83.1-2), libcurl4 (= 7.83.1-2), libdata-optlist-perl (= 0.112-1), libdatrie1 (= 0.2.13-2), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdeflate0 (= 1.10-2), libdevel-callchecker-perl (= 0.008-1ubuntu4), libdevel-globaldestruction-perl (= 0.14-2), libdevel-overloadinfo-perl (= 0.007-1), libdevel-stacktrace-perl (= 2.0400-1), libdist-checkconflicts-perl (= 0.11-2), libdpkg-perl (= 1.21.8ubuntu1), libdw1 (= 0.187-1), libdynaloader-functions-perl (= 0.003-2), libelf1 (= 0.187-1), libencode-locale-perl (= 1.05-2), libeval-closure-perl (= 0.14-2), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfile-which-perl (= 1.27-1), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libfribidi0 (= 1.0.8-2ubuntu3.1), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran-11-dev (= 11.3.0-3ubuntu1), libgfortran5 (= 12.1.0-2ubuntu1), libglib2.0-0 (= 2.72.2-2), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.19.2-2), libharfbuzz0b (= 2.7.4-1ubuntu4), libhogweed6 (= 3.7.3-1build2), libhttp-date-perl (= 6.05-1), libhttp-message-perl (= 6.37-1), libice6 (= 2:1.0.10-1build2), libicu-dev (= 71.1-3), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libio-html-perl (= 1.004-3), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libjbig0 (= 2.1-3.1build3), libjpeg-dev (= 8c-2ubuntu10), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg-turbo8-dev (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjpeg8-dev (= 8c-2ubuntu10), libjs-bootstrap (= 3.4.1+dfsg-2), libjs-highlight.js (= 9.18.5+dfsg1-2), libjs-jquery (= 3.6.0+dfsg+~3.5.13-1), libjs-jquery-datatables (= 1.11.5+dfsg-2), libjs-mathjax (= 2.7.9+dfsg-1), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblapack-dev (= 3.10.1-2), liblapack3 (= 3.10.1-2), libldap-2.5-0 (= 2.5.12+dfsg-2ubuntu1), liblsan0 (= 12.1.0-2ubuntu1), liblwp-mediatypes-perl (= 6.04-1), liblz4-1 (= 1.9.3-2build2), liblzma-dev (= 5.2.5-2.1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-1build1), libmodule-implementation-perl (= 0.09-2), libmodule-runtime-conflicts-perl (= 0.003-2), libmodule-runtime-perl (= 0.016-2), libmoose-perl (= 2.2200-1build1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libmro-compat-perl (= 0.15-1), libnamespace-clean-perl (= 0.27-2), libncurses-dev (= 6.3+20220423-2), libncurses5-dev (= 6.3+20220423-2), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnghttp2-14 (= 1.47.0-1), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libp11-kit0 (= 0.24.1-1), libpackage-deprecationmanager-perl (= 0.17-2), libpackage-stash-perl (= 0.40-1), libpackage-stash-xs-perl (= 0.29-1build5), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpango-1.0-0 (= 1.50.7+ds-1), libpangocairo-1.0-0 (= 1.50.7+ds-1), libpangoft2-1.0-0 (= 1.50.7+ds-1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libparams-classify-perl (= 0.015-2), libparams-util-perl (= 1.102-1build3), libpcre16-3 (= 2:8.39-14), libpcre2-16-0 (= 10.40-1), libpcre2-32-0 (= 10.40-1), libpcre2-8-0 (= 10.40-1), libpcre2-dev (= 10.40-1), libpcre2-posix3 (= 10.40-1), libpcre3 (= 2:8.39-14), libpcre3-dev (= 2:8.39-14), libpcre32-3 (= 2:8.39-14), libpcrecpp0v5 (= 2:8.39-14), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpixman-1-0 (= 0.40.0-1build4), libpng-dev (= 1.6.37-5), libpng16-16 (= 1.6.37-5), libpsl5 (= 0.21.0-1.2build2), libquadmath0 (= 12.1.0-2ubuntu1), libreadline-dev (= 8.1.2-1.2), libreadline8 (= 8.1.2-1.2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg-6ubuntu1), libsasl2-modules-db (= 2.1.28+dfsg-6ubuntu1), libscalar-list-utils-perl (= 1:1.62-1), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.13-1ubuntu3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libssh-4 (= 0.9.6-2build1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libsub-exporter-perl (= 0.988-1), libsub-exporter-progressive-perl (= 0.001013-2), libsub-identify-perl (= 0.14-2), libsub-install-perl (= 0.928-2), libsub-name-perl (= 0.26-1build3), libsub-override-perl (= 0.09-3), libswitch-perl (= 2.17-3), libsystemd0 (= 249.11-0ubuntu4), libtasn1-6 (= 4.18.0-4build1), libtcl8.6 (= 8.6.12+dfsg-1build1), libthai-data (= 0.1.29-1build1), libthai0 (= 0.1.29-1build1), libtiff5 (= 4.4.0~rc1-1), libtimedate-perl (= 2.3300-2), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtk8.6 (= 8.6.12-1build1), libtool (= 2.4.7-4), libtry-tiny-perl (= 0.31-1), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), liburi-perl (= 5.10-1), libuuid1 (= 2.38-4ubuntu1), libvariable-magic-perl (= 0.62-1build5), libwebp7 (= 1.2.2-2), libwww-curl-perl (= 4.17-7build2), libwww-curl-simple-perl (= 0.100191-2), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.14-3ubuntu3), libxcb-shm0 (= 1.14-3ubuntu3), libxcb1 (= 1.14-3ubuntu3), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxft2 (= 2.3.4-1), libxml2 (= 2.9.14+dfsg-1), libxmuu1 (= 2:1.1.3-3), libxrender1 (= 1:0.9.10-1.1), libxss1 (= 1:1.2.3-1build2), libxt6 (= 1:1.2.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.15.0-27.28), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), node-normalize.css (= 8.0.1-5), openssl (= 3.0.3-5ubuntu3), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu3), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.2.0-1ubuntu1), r-base-dev (= 4.2.0-1ubuntu1), r-bioc-biobase (= 2.56.0-1), r-bioc-biocgenerics (= 0.42.0-1), r-bioc-biocviews (= 1.64.0-1), r-bioc-graph (= 1.74.0-1), r-bioc-rbgl (= 1.72.0+dfsg-1), r-cran-askpass (= 1.1-2), r-cran-bh (= 1.74.0-2), r-cran-biocmanager (= 1.30.18+dfsg-1), r-cran-bitops (= 1.0-7-1), r-cran-codetools (= 0.2-18-1), r-cran-curl (= 4.3.2+dfsg-1), r-cran-evaluate (= 0.15-1), r-cran-glue (= 1.6.2-1), r-cran-highr (= 0.9+dfsg-1), r-cran-httr (= 1.4.3-1), r-cran-jsonlite (= 1.8.0+dfsg-1), r-cran-knitr (= 1.39+dfsg-1), r-cran-magrittr (= 2.0.3-1), r-cran-mime (= 0.12-1), r-cran-openssl (= 2.0.2+dfsg-1), r-cran-r6 (= 2.5.1-1), r-cran-rcurl (= 1.98-1.6-1), r-cran-runit (= 0.4.32-3), r-cran-stringdist (= 0.9.8-1), r-cran-stringi (= 1.7.6-1build2), r-cran-stringr (= 1.4.0-2build1), r-cran-sys (= 3.4-1), r-cran-xfun (= 0.31-1), r-cran-xml (= 3.99-0.10-1), r-cran-yaml (= 2.3.5-1), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build3), tzdata (= 2022a-0ubuntu1), ucf (= 3.0043), unzip (= 6.0-26ubuntu3), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xauth (= 1:1.1.1-1), xdg-utils (= 1.1.3-4.1ubuntu2), xz-utils (= 5.2.5-2.1), zip (= 3.0-12build2), zlib1g (= 1:1.2.11.dfsg-2ubuntu9), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1652510384" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-bioccheck_1.32.0+dfsg-1_all.deb -------------------------------------- new Debian package, version 2.0. size 4406108 bytes: control archive=2199 bytes. 806 bytes, 13 lines control 5210 bytes, 56 lines md5sums Package: r-bioc-bioccheck Version: 1.32.0+dfsg-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian R Packages Maintainers Installed-Size: 4723 Depends: r-base-core (>= 4.2.0-1ubuntu1), r-api-4.0, r-api-bioc-3.15, r-bioc-biocviews (>= 1.33.7), r-cran-biocmanager, r-cran-stringdist, r-bioc-graph, r-cran-httr, r-cran-codetools, r-cran-knitr Suggests: r-cran-runit, r-bioc-biocgenerics, r-bioc-biobase, r-cran-jsonlite, r-cran-rmarkdown, r-cran-downloader, r-cran-devtools (>= 1.4.1), r-cran-usethis, r-bioc-biocstyle Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/BiocCheck/ Description: Bioconductor-specific package checks Executes Bioconductor-specific package checks. drwxr-xr-x root/root 0 2022-05-14 06:39 ./ drwxr-xr-x 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amd64 Install-Time: 37 Job: r-bioc-bioccheck_1.32.0+dfsg-1.dsc Machine Architecture: amd64 Package: r-bioc-bioccheck Package-Time: 58 Source-Version: 1.32.0+dfsg-1 Space: 14180 Status: successful Version: 1.32.0+dfsg-1 -------------------------------------------------------------------------------- Finished at 2022-06-23T12:39:43Z Build needed 00:00:58, 14180k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24058347 Scanning for processes to kill in build PACKAGEBUILD-24058347