https://launchpad.net/ubuntu/+archive/test-rebuild-20220617-kinetic/+build/24034000 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-016 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 Buildd toolchain package versions: launchpad-buildd_215~563~ubuntu20.04.1 python3-lpbuildd_215~563~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.4 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 23 Jun 03:54:39 ntpdate[1823]: adjust time server 10.211.37.1 offset -0.000562 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24034000 --image-type chroot /home/buildd/filecache-default/4d18961cd05542d5def75b14497015b674c37821 Creating target for build PACKAGEBUILD-24034000 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24034000 Starting target for build PACKAGEBUILD-24034000 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24034000 'deb http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic main' 'deb http://ftpmaster.internal/ubuntu kinetic main universe' Overriding sources.list in build-PACKAGEBUILD-24034000 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24034000 Adding trusted keys to build-PACKAGEBUILD-24034000 pub rsa1024/1E9377A2BA9EF27F 2009-10-22 [SC] Key fingerprint = 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid Launchpad Toolchain builds RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24034000 Updating target for build PACKAGEBUILD-24034000 Get:1 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic InRelease [23.8 kB] Get:2 http://ftpmaster.internal/ubuntu kinetic InRelease [267 kB] Get:3 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 Packages [9632 B] Get:4 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main Translation-en [4132 B] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 Packages [1398 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/universe amd64 Packages [14.3 MB] Get:8 http://ftpmaster.internal/ubuntu kinetic/universe Translation-en [5729 kB] Fetched 22.2 MB in 4s (5351 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: libgprofng0 util-linux-extra The following packages will be upgraded: adduser apt base-files binutils binutils-common binutils-x86-64-linux-gnu bsdutils cpp-11 dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gcc-12-base init init-system-helpers libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdb5.3 libdpkg-perl libext2fs2 libfakeroot libgcc-11-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libkeyutils1 liblsan0 liblzma5 libmount1 libncurses6 libncursesw6 libpng16-16 libquadmath0 libreadline8 libselinux1 libsemanage-common libsemanage2 libsepol2 libsmartcols1 libsqlite3-0 libss2 libssl3 libstdc++-11-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 login logsave lto-disabled-list mawk mount ncurses-base ncurses-bin openssl passwd pinentry-curses policyrcd-script-zg2 readline-common systemd systemd-sysv util-linux xz-utils 83 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 79.7 MB of archives. After this operation, 5304 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu kinetic/main amd64 base-files amd64 12.2ubuntu1 [62.6 kB] Get:2 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf0 amd64 2.38.50.20220615-4ubuntu1 [103 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdutils amd64 1:2.38-4ubuntu1 [80.7 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 libzstd1 amd64 1.5.2+dfsg-1 [270 kB] Get:5 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libctf-nobfd0 amd64 2.38.50.20220615-4ubuntu1 [107 kB] Get:6 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-x86-64-linux-gnu amd64 2.38.50.20220615-4ubuntu1 [2476 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libatomic1 amd64 12.1.0-2ubuntu1 [10.4 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libubsan1 amd64 12.1.0-2ubuntu1 [969 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 libquadmath0 amd64 12.1.0-2ubuntu1 [152 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblsan0 amd64 12.1.0-2ubuntu1 [1060 kB] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 libitm1 amd64 12.1.0-2ubuntu1 [29.5 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgomp1 amd64 12.1.0-2ubuntu1 [125 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-12-base amd64 12.1.0-2ubuntu1 [18.8 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-s1 amd64 12.1.0-2ubuntu1 [54.2 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcc1-0 amd64 12.1.0-2ubuntu1 [46.6 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++6 amd64 12.1.0-2ubuntu1 [679 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgpg-error0 amd64 1.45-2 [69.0 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcrypt20 amd64 1.10.1-2ubuntu1 [524 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblzma5 amd64 5.2.5-2.1 [99.2 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd-sysv amd64 249.11-0ubuntu4 [10.2 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapparmor1 amd64 3.0.4-2ubuntu3 [38.0 kB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgnutls30 amd64 3.7.6-2ubuntu1 [968 kB] Get:23 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libbinutils amd64 2.38.50.20220615-4ubuntu1 [655 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 libip4tc2 amd64 1.8.7-1ubuntu6 [19.7 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libblkid1 amd64 2.38-4ubuntu1 [103 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libselinux1 amd64 3.4-1 [77.6 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmount1 amd64 2.38-4ubuntu1 [121 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsmartcols1 amd64 2.38-4ubuntu1 [50.8 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 login amd64 1:4.11.1+dfsg1-2ubuntu1 [183 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux-extra amd64 2.38-4ubuntu1 [83.8 kB] Get:31 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils amd64 2.38.50.20220615-4ubuntu1 [3292 B] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 util-linux amd64 2.38-4ubuntu1 [1069 kB] Get:33 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 binutils-common amd64 2.38.50.20220615-4ubuntu1 [224 kB] Get:34 http://ppa.launchpadcontent.net/ubuntu-toolchain-r/binutils/ubuntu kinetic/main amd64 libgprofng0 amd64 2.38.50.20220615-4ubuntu1 [963 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 mount amd64 2.38-4ubuntu1 [114 kB] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage-common all 3.4-1 [9828 B] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsepol2 amd64 3.4-2 [294 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsemanage2 amd64 3.4-1 [91.8 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 passwd amd64 1:4.11.1+dfsg1-2ubuntu1 [765 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 adduser all 3.121ubuntu1 [150 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 systemd amd64 249.11-0ubuntu4 [4517 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsystemd0 amd64 249.11-0ubuntu4 [314 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libudev1 amd64 249.11-0ubuntu4 [76.1 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 libapt-pkg6.0 amd64 2.5.0 [896 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg amd64 1.21.8ubuntu1 [1333 kB] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-bin amd64 6.3+20220423-2 [183 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 init-system-helpers all 1.63 [38.7 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 ncurses-base all 6.3+20220423-2 [21.2 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 apt amd64 2.5.0 [1370 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 logsave amd64 1.46.5-2ubuntu2 [9914 B] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 libext2fs2 amd64 1.46.5-2ubuntu2 [205 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 e2fsprogs amd64 1.46.5-2ubuntu2 [585 kB] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 init amd64 1.63 [5674 B] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcap-ng0 amd64 0.7.9-4 [12.1 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.9 [717 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncurses6 amd64 6.3+20220423-2 [110 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libncursesw6 amd64 6.3+20220423-2 [146 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtinfo6 amd64 6.3+20220423-2 [99.6 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuuid1 amd64 2.38-4ubuntu1 [23.2 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcom-err2 amd64 1.46.5-2ubuntu2 [9074 B] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libss2 amd64 1.46.5-2ubuntu2 [12.3 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 mawk amd64 1.3.4.20200120-3.1 [109 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkeyutils1 amd64 1.6.1-3ubuntu1 [10.1 kB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 readline-common all 8.1.2-1.2 [53.6 kB] Get:65 http://ftpmaster.internal/ubuntu kinetic/main amd64 libreadline8 amd64 8.1.2-1.2 [153 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsqlite3-0 amd64 3.38.5-1 [646 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/main amd64 libssl3 amd64 3.0.3-5ubuntu3 [1897 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/main amd64 openssl amd64 3.0.3-5ubuntu3 [1175 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpng16-16 amd64 1.6.37-5 [187 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 xz-utils amd64 5.2.5-2.1 [83.8 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 g++-11 amd64 11.3.0-3ubuntu1 [11.3 MB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 libstdc++-11-dev amd64 11.3.0-3ubuntu1 [2074 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasan6 amd64 11.3.0-3ubuntu1 [2265 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11 amd64 11.3.0-3ubuntu1 [20.0 MB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgcc-11-dev amd64 11.3.0-3ubuntu1 [2484 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtsan0 amd64 11.3.0-3ubuntu1 [2241 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 cpp-11 amd64 11.3.0-3ubuntu1 [9910 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/main amd64 gcc-11-base amd64 11.3.0-3ubuntu1 [20.8 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/main amd64 dpkg-dev all 1.21.8ubuntu1 [1069 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdpkg-perl all 1.21.8ubuntu1 [237 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/main amd64 lto-disabled-list all 27 [12.4 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfakeroot amd64 1.29-1ubuntu1 [31.1 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 fakeroot amd64 1.29-1ubuntu1 [60.0 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 pinentry-curses amd64 1.2.0-1ubuntu1 [34.5 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 policyrcd-script-zg2 all 0.1-3.1 [5730 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 79.7 MB in 2s (43.5 MB/s) (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../base-files_12.2ubuntu1_amd64.deb ... Unpacking base-files (12.2ubuntu1) over (12ubuntu5) ... Setting up base-files (12.2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.38-4ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.38-4ubuntu1) over (1:2.37.2-4ubuntu3) ... Setting up bsdutils (1:2.38-4ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.2+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.2+dfsg-1) over (1.4.8+dfsg-3build1) ... Setting up libzstd1:amd64 (1.5.2+dfsg-1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../0-libatomic1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../1-libubsan1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../2-libquadmath0_12.1.0-2ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../3-liblsan0_12.1.0-2ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../4-libitm1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../5-libgomp1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../6-gcc-12-base_12.1.0-2ubuntu1_amd64.deb ... Unpacking gcc-12-base:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Setting up gcc-12-base:amd64 (12.1.0-2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libgcc-s1_12.1.0-2ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Setting up libgcc-s1:amd64 (12.1.0-2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libcc1-0_12.1.0-2ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Preparing to unpack .../libstdc++6_12.1.0-2ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (12.1.0-2ubuntu1) over (12-20220428-1ubuntu1) ... Setting up libstdc++6:amd64 (12.1.0-2ubuntu1) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.45-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.45-2) over (1.43-3) ... Setting up libgpg-error0:amd64 (1.45-2) ... (Reading database ... 13449 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.1-2ubuntu1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.10.1-2ubuntu1) over (1.9.4-3ubuntu3) ... Setting up libgcrypt20:amd64 (1.10.1-2ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.5-2.1_amd64.deb ... Unpacking liblzma5:amd64 (5.2.5-2.1) over (5.2.5-2ubuntu1) ... Setting up liblzma5:amd64 (5.2.5-2.1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../systemd-sysv_249.11-0ubuntu4_amd64.deb ... Unpacking systemd-sysv (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Preparing to unpack .../libapparmor1_3.0.4-2ubuntu3_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.4-2ubuntu3) over (3.0.4-2ubuntu2) ... Preparing to unpack .../libgnutls30_3.7.6-2ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.6-2ubuntu1) over (3.7.4-2ubuntu1) ... Setting up libgnutls30:amd64 (3.7.6-2ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libip4tc2_1.8.7-1ubuntu6_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.7-1ubuntu6) over (1.8.7-1ubuntu5) ... Preparing to unpack .../libblkid1_2.38-4ubuntu1_amd64.deb ... Unpacking libblkid1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libblkid1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libselinux1_3.4-1_amd64.deb ... Unpacking libselinux1:amd64 (3.4-1) over (3.3-1build2) ... Setting up libselinux1:amd64 (3.4-1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libmount1_2.38-4ubuntu1_amd64.deb ... Unpacking libmount1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libmount1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.38-4ubuntu1_amd64.deb ... Unpacking libsmartcols1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libsmartcols1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../login_1%3a4.11.1+dfsg1-2ubuntu1_amd64.deb ... Unpacking login (1:4.11.1+dfsg1-2ubuntu1) over (1:4.8.1-2ubuntu2) ... Setting up login (1:4.11.1+dfsg1-2ubuntu1) ... Installing new version of config file /etc/login.defs ... (Reading database ... 13451 files and directories currently installed.) Preparing to unpack .../util-linux_2.38-4ubuntu1_amd64.deb ... Unpacking util-linux (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... dpkg: warning: unable to delete old directory '/usr/lib/udev': Directory not empty Selecting previously unselected package util-linux-extra. Preparing to unpack .../util-linux-extra_2.38-4ubuntu1_amd64.deb ... Unpacking util-linux-extra (2.38-4ubuntu1) ... Setting up util-linux-extra (2.38-4ubuntu1) ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../mount_2.38-4ubuntu1_amd64.deb ... Unpacking mount (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Preparing to unpack .../libsemanage-common_3.4-1_all.deb ... Unpacking libsemanage-common (3.4-1) over (3.3-1build2) ... Setting up libsemanage-common (3.4-1) ... Installing new version of config file /etc/selinux/semanage.conf ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../libsepol2_3.4-2_amd64.deb ... Unpacking libsepol2:amd64 (3.4-2) over (3.3-1build1) ... Setting up libsepol2:amd64 (3.4-2) ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.4-1_amd64.deb ... Unpacking libsemanage2:amd64 (3.4-1) over (3.3-1build2) ... Setting up libsemanage2:amd64 (3.4-1) ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.11.1+dfsg1-2ubuntu1_amd64.deb ... Unpacking passwd (1:4.11.1+dfsg1-2ubuntu1) over (1:4.8.1-2ubuntu2) ... Setting up passwd (1:4.11.1+dfsg1-2ubuntu1) ... Installing new version of config file /etc/default/useradd ... (Reading database ... 13463 files and directories currently installed.) Preparing to unpack .../adduser_3.121ubuntu1_all.deb ... Unpacking adduser (3.121ubuntu1) over (3.118ubuntu5) ... Setting up adduser (3.121ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../systemd_249.11-0ubuntu4_amd64.deb ... Unpacking systemd (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Preparing to unpack .../libsystemd0_249.11-0ubuntu4_amd64.deb ... Unpacking libsystemd0:amd64 (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Setting up libsystemd0:amd64 (249.11-0ubuntu4) ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../libudev1_249.11-0ubuntu4_amd64.deb ... Unpacking libudev1:amd64 (249.11-0ubuntu4) over (249.11-0ubuntu3.1) ... Setting up libudev1:amd64 (249.11-0ubuntu4) ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.5.0_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.5.0) over (2.4.5) ... Setting up libapt-pkg6.0:amd64 (2.5.0) ... (Reading database ... 13460 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.8ubuntu1_amd64.deb ... Unpacking dpkg (1.21.8ubuntu1) over (1.21.1ubuntu2) ... Setting up dpkg (1.21.8ubuntu1) ... (Reading database ... 13464 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.3+20220423-2_amd64.deb ... Unpacking ncurses-bin (6.3+20220423-2) over (6.3-2) ... Setting up ncurses-bin (6.3+20220423-2) ... (Reading database ... 13464 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.63_all.deb ... Unpacking init-system-helpers (1.63) over (1.62) ... Setting up init-system-helpers (1.63) ... (Reading database ... 13464 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.3+20220423-2_all.deb ... Unpacking ncurses-base (6.3+20220423-2) over (6.3-2) ... Setting up ncurses-base (6.3+20220423-2) ... (Reading database ... 13465 files and directories currently installed.) Preparing to unpack .../archives/apt_2.5.0_amd64.deb ... Unpacking apt (2.5.0) over (2.4.5) ... Setting up apt (2.5.0) ... (Reading database ... 13466 files and directories currently installed.) Preparing to unpack .../logsave_1.46.5-2ubuntu2_amd64.deb ... Unpacking logsave (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../libext2fs2_1.46.5-2ubuntu2_amd64.deb ... Unpacking libext2fs2:amd64 (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Setting up libext2fs2:amd64 (1.46.5-2ubuntu2) ... (Reading database ... 13466 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.46.5-2ubuntu2_amd64.deb ... Unpacking e2fsprogs (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Setting up libapparmor1:amd64 (3.0.4-2ubuntu3) ... Setting up libip4tc2:amd64 (1.8.7-1ubuntu6) ... Setting up util-linux (2.38-4ubuntu1) ... Setting up mount (2.38-4ubuntu1) ... Setting up systemd (249.11-0ubuntu4) ... Initializing machine ID from random generator. Setting up systemd-sysv (249.11-0ubuntu4) ... (Reading database ... 13466 files and directories currently installed.) Preparing to unpack .../archives/init_1.63_amd64.deb ... Unpacking init (1.63) over (1.62) ... Preparing to unpack .../libcap-ng0_0.7.9-4_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-4) over (0.7.9-2.2build3) ... Setting up libcap-ng0:amd64 (0.7.9-4) ... (Reading database ... 13466 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.9_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg1-0.9) over (5.3.28+dfsg1-0.8ubuntu3) ... Setting up libdb5.3:amd64 (5.3.28+dfsg1-0.9) ... (Reading database ... 13466 files and directories currently installed.) Preparing to unpack .../libncurses6_6.3+20220423-2_amd64.deb ... Unpacking libncurses6:amd64 (6.3+20220423-2) over (6.3-2) ... Preparing to unpack .../libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) over (6.3-2) ... Preparing to unpack .../libtinfo6_6.3+20220423-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.3+20220423-2) over (6.3-2) ... Setting up libtinfo6:amd64 (6.3+20220423-2) ... (Reading database ... 13465 files and directories currently installed.) Preparing to unpack .../libuuid1_2.38-4ubuntu1_amd64.deb ... Unpacking libuuid1:amd64 (2.38-4ubuntu1) over (2.37.2-4ubuntu3) ... Setting up libuuid1:amd64 (2.38-4ubuntu1) ... (Reading database ... 13466 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.46.5-2ubuntu2_amd64.deb ... Unpacking libcom-err2:amd64 (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../01-libss2_1.46.5-2ubuntu2_amd64.deb ... Unpacking libss2:amd64 (1.46.5-2ubuntu2) over (1.46.5-2ubuntu1) ... Preparing to unpack .../02-mawk_1.3.4.20200120-3.1_amd64.deb ... Unpacking mawk (1.3.4.20200120-3.1) over (1.3.4.20200120-3) ... Preparing to unpack .../03-libkeyutils1_1.6.1-3ubuntu1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.1-3ubuntu1) over (1.6.1-2ubuntu3) ... Preparing to unpack .../04-readline-common_8.1.2-1.2_all.deb ... Unpacking readline-common (8.1.2-1.2) over (8.1.2-1) ... Preparing to unpack .../05-libreadline8_8.1.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.1.2-1.2) over (8.1.2-1) ... Preparing to unpack .../06-libsqlite3-0_3.38.5-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.38.5-1) over (3.37.2-2) ... Preparing to unpack .../07-libssl3_3.0.3-5ubuntu3_amd64.deb ... Unpacking libssl3:amd64 (3.0.3-5ubuntu3) over (3.0.2-0ubuntu1) ... Preparing to unpack .../08-openssl_3.0.3-5ubuntu3_amd64.deb ... Unpacking openssl (3.0.3-5ubuntu3) over (3.0.2-0ubuntu1) ... Preparing to unpack .../09-libpng16-16_1.6.37-5_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-5) over (1.6.37-3build5) ... Preparing to unpack .../10-xz-utils_5.2.5-2.1_amd64.deb ... Unpacking xz-utils (5.2.5-2.1) over (5.2.5-2ubuntu1) ... Preparing to unpack .../11-libctf0_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libctf0:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../12-libctf-nobfd0_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../13-binutils-x86-64-linux-gnu_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../14-libbinutils_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../15-binutils_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking binutils (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Preparing to unpack .../16-binutils-common_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.38.50.20220615-4ubuntu1) over (2.38-3ubuntu1) ... Selecting previously unselected package libgprofng0:amd64. Preparing to unpack .../17-libgprofng0_2.38.50.20220615-4ubuntu1_amd64.deb ... Unpacking libgprofng0:amd64 (2.38.50.20220615-4ubuntu1) ... Preparing to unpack .../18-g++-11_11.3.0-3ubuntu1_amd64.deb ... Unpacking g++-11 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../19-libstdc++-11-dev_11.3.0-3ubuntu1_amd64.deb ... Unpacking libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../20-libasan6_11.3.0-3ubuntu1_amd64.deb ... Unpacking libasan6:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../21-gcc-11_11.3.0-3ubuntu1_amd64.deb ... Unpacking gcc-11 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../22-libgcc-11-dev_11.3.0-3ubuntu1_amd64.deb ... Unpacking libgcc-11-dev:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../23-libtsan0_11.3.0-3ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../24-cpp-11_11.3.0-3ubuntu1_amd64.deb ... Unpacking cpp-11 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../25-gcc-11-base_11.3.0-3ubuntu1_amd64.deb ... Unpacking gcc-11-base:amd64 (11.3.0-3ubuntu1) over (11.3.0-1ubuntu1) ... Preparing to unpack .../26-dpkg-dev_1.21.8ubuntu1_all.deb ... Unpacking dpkg-dev (1.21.8ubuntu1) over (1.21.1ubuntu2) ... Preparing to unpack .../27-libdpkg-perl_1.21.8ubuntu1_all.deb ... Unpacking libdpkg-perl (1.21.8ubuntu1) over (1.21.1ubuntu2) ... Preparing to unpack .../28-lto-disabled-list_27_all.deb ... Unpacking lto-disabled-list (27) over (25) ... Preparing to unpack .../29-libfakeroot_1.29-1ubuntu1_amd64.deb ... Unpacking libfakeroot:amd64 (1.29-1ubuntu1) over (1.28-1ubuntu1) ... Preparing to unpack .../30-fakeroot_1.29-1ubuntu1_amd64.deb ... Unpacking fakeroot (1.29-1ubuntu1) over (1.28-1ubuntu1) ... Preparing to unpack .../31-pinentry-curses_1.2.0-1ubuntu1_amd64.deb ... Unpacking pinentry-curses (1.2.0-1ubuntu1) over (1.1.1-1build2) ... Preparing to unpack .../32-policyrcd-script-zg2_0.1-3.1_all.deb ... Unpacking policyrcd-script-zg2 (0.1-3.1) over (0.1-3) ... Setting up gcc-11-base:amd64 (11.3.0-3ubuntu1) ... Setting up libkeyutils1:amd64 (1.6.1-3ubuntu1) ... Setting up lto-disabled-list (27) ... Setting up init (1.63) ... Setting up libsqlite3-0:amd64 (3.38.5-1) ... Setting up binutils-common:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up libssl3:amd64 (3.0.3-5ubuntu3) ... Setting up libctf-nobfd0:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up libcom-err2:amd64 (1.46.5-2ubuntu2) ... Setting up libgomp1:amd64 (12.1.0-2ubuntu1) ... Setting up libfakeroot:amd64 (1.29-1ubuntu1) ... Setting up libasan6:amd64 (11.3.0-3ubuntu1) ... Setting up fakeroot (1.29-1ubuntu1) ... Setting up policyrcd-script-zg2 (0.1-3.1) ... Setting up libncurses6:amd64 (6.3+20220423-2) ... Setting up xz-utils (5.2.5-2.1) ... Setting up libquadmath0:amd64 (12.1.0-2ubuntu1) ... Setting up libpng16-16:amd64 (1.6.37-5) ... Setting up libatomic1:amd64 (12.1.0-2ubuntu1) ... Setting up libss2:amd64 (1.46.5-2ubuntu2) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libdpkg-perl (1.21.8ubuntu1) ... Setting up logsave (1.46.5-2ubuntu2) ... Setting up libubsan1:amd64 (12.1.0-2ubuntu1) ... Setting up mawk (1.3.4.20200120-3.1) ... Setting up libbinutils:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up openssl (3.0.3-5ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1.2) ... Setting up libcc1-0:amd64 (12.1.0-2ubuntu1) ... Setting up liblsan0:amd64 (12.1.0-2ubuntu1) ... Setting up libitm1:amd64 (12.1.0-2ubuntu1) ... Setting up libtsan0:amd64 (11.3.0-3ubuntu1) ... Setting up libctf0:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up pinentry-curses (1.2.0-1ubuntu1) ... Setting up cpp-11 (11.3.0-3ubuntu1) ... Setting up libreadline8:amd64 (8.1.2-1.2) ... Setting up e2fsprogs (1.46.5-2ubuntu2) ... Setting up libgprofng0:amd64 (2.38.50.20220615-4ubuntu1) ... Setting up libgcc-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.38.50.20220615-4ubuntu1) ... Setting up binutils (2.38.50.20220615-4ubuntu1) ... Setting up dpkg-dev (1.21.8ubuntu1) ... Setting up libstdc++-11-dev:amd64 (11.3.0-3ubuntu1) ... Setting up gcc-11 (11.3.0-3ubuntu1) ... Setting up g++-11 (11.3.0-3ubuntu1) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24034000 amd64 kinetic -c chroot:build-PACKAGEBUILD-24034000 --arch=amd64 --dist=kinetic --nolog -A logol_1.7.9+dfsg-5.dsc Initiating build PACKAGEBUILD-24034000 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lgw01-amd64-016.buildd +==============================================================================+ | logol 1.7.9+dfsg-5 (amd64) Thu, 23 Jun 2022 03:55:00 +0000 | +==============================================================================+ Package: logol Version: 1.7.9+dfsg-5 Source Version: 1.7.9+dfsg-5 Distribution: kinetic Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24034000/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/logol-hmzBxf/resolver-mGJXpa' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- logol_1.7.9+dfsg-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/logol-hmzBxf/logol-1.7.9+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/logol-hmzBxf' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog (>= 8.4.2), swi-prolog-abi-binary-68, libbiojava-java (>= 1:1.9.5+dfsg), antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog (>= 8.4.2), swi-prolog-abi-binary-68, libbiojava-java (>= 1:1.9.5+dfsg), antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [557 B] Get:5 copy:/<>/apt_archive ./ Packages [642 B] Fetched 2162 B in 0s (182 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ant ant-optional antlr3 autoconf automake autopoint autotools-dev bsdextrautils ca-certificates-java cassiopee chrpath debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base groff-base intltool-debian java-common junit4 libactivation-java libantlr3-runtime-java libapache-pom-java libarchive-zip-perl libarchive13 libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.9-java libboost-serialization1.74.0 libbrotli1 libbsd0 libcairo2 libcassie1v5 libcommons-cli-java libcommons-collections3-java libcommons-configuration-java libcommons-dbcp-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcommons-pool-java libcups2 libdbus-1-3 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgflags2.2 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-glog0v6 libgraphite2-3 libguava-java libhamcrest-java libharfbuzz0b libice6 libicu71 libjgraph-java libjgrapht0.8-java libjpeg-turbo8 libjpeg8 libjsr305-java libkpathsea6 liblcms2-2 libllvm14 liblog4j1.2-java libmagic-mgc libmagic1 libmail-java libmd0 libmpdec3 libnspr4 libnss3 libossp-uuid16 libpaper-utils libpaper1 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libruby3.0 libsensors-config libsensors5 libsigsegv2 libsm6 libstringtemplate4-java libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtexluajit2 libtool libuchardet0 libunwind8 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyaml-0-2 libzzip-0-13 m4 man-db media-types openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless po-debconf preview-latex-style python3 python3-minimal python3.10 python3.10-minimal rake ruby ruby-cassiopee ruby-net-telnet ruby-rubygems ruby-text ruby-webrick ruby-xmlrpc ruby3.0 rubygems-integration swi-prolog swi-prolog-core swi-prolog-core-packages swi-prolog-doc swi-prolog-nox swi-prolog-x t1utils tex-common texlive texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils Suggested packages: ant-doc antlr javacc junit jython libbcel-java libbsf-java libcommons-net-java libjaxp1.3-java libjdepend-java libjsch-java liboro-java libregexp-java libxz-java autoconf-archive gnu-standards autoconf-doc dh-make gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libbiojava-java-doc libcommons-collections3-java-doc libcommons-beanutils-java libcommons-codec-java libcommons-digester-java libcommons-jexl2-java libcommons-jxpath-java libcommons-vfs-java libcommons-dbcp-java-doc libgeronimo-jta-1.2-spec-java libcommons-lang-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libjsr305-java-doc liblcms2-utils liblog4j1.2-java-doc libmail-java-doc uuid pcscd lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libxalan2-java-doc libxsltc-java libxerces2-java-doc libxml-commons-resolver1.1-java-doc m4-doc apparmor less www-browser openjdk-11-demo openjdk-11-source visualvm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support ri ruby-dev bundler elpa-ediprolog swi-prolog-java swi-prolog-odbc swi-prolog-bdb ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: libstringtemplate-java curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus libarchive-cpio-perl libgl1-amber-dri libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev mesa-vulkan-drivers | vulkan-icd libxt-dev libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl zip fonts-lato libjs-jquery lmodern dvisvgm tex-gyre tipa libspreadsheet-parseexcel-perl tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: ant ant-optional antlr3 autoconf automake autopoint autotools-dev bsdextrautils ca-certificates-java cassiopee chrpath debhelper debugedit default-jdk default-jdk-headless default-jre default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base groff-base intltool-debian java-common junit4 libactivation-java libantlr3-runtime-java libapache-pom-java libarchive-zip-perl libarchive13 libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbiojava-java libbiojava1.9-java libboost-serialization1.74.0 libbrotli1 libbsd0 libcairo2 libcassie1v5 libcommons-cli-java libcommons-collections3-java libcommons-configuration-java libcommons-dbcp-java libcommons-lang-java libcommons-logging-java libcommons-parent-java libcommons-pool-java libcups2 libdbus-1-3 libdebhelper-perl libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libgflags2.2 libgif7 libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-glog0v6 libgraphite2-3 libguava-java libhamcrest-java libharfbuzz0b libice6 libicu71 libjgraph-java libjgrapht0.8-java libjpeg-turbo8 libjpeg8 libjsr305-java libkpathsea6 liblcms2-2 libllvm14 liblog4j1.2-java libmagic-mgc libmagic1 libmail-java libmd0 libmpdec3 libnspr4 libnss3 libossp-uuid16 libpaper-utils libpaper1 libpcsclite1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libruby3.0 libsensors-config libsensors5 libsigsegv2 libsm6 libstringtemplate4-java libsub-override-perl libsynctex2 libteckit0 libtexlua53-5 libtexluajit2 libtool libuchardet0 libunwind8 libvulkan1 libx11-6 libx11-data libx11-xcb1 libxalan2-java libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxft2 libxi6 libxml-commons-external-java libxml-commons-resolver1.1-java libxml2 libxmu6 libxpm4 libxrender1 libxshmfence1 libxt6 libxtst6 libxxf86vm1 libyaml-0-2 libzzip-0-13 m4 man-db media-types openjdk-11-jdk openjdk-11-jdk-headless openjdk-11-jre openjdk-11-jre-headless po-debconf preview-latex-style python3 python3-minimal python3.10 python3.10-minimal rake ruby ruby-cassiopee ruby-net-telnet ruby-rubygems ruby-text ruby-webrick ruby-xmlrpc ruby3.0 rubygems-integration sbuild-build-depends-main-dummy swi-prolog swi-prolog-core swi-prolog-core-packages swi-prolog-doc swi-prolog-nox swi-prolog-x t1utils tex-common texlive texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures texlive-plain-generic ucf x11-common xdg-utils 0 upgraded, 208 newly installed, 0 to remove and 0 not upgraded. Need to get 470 MB of archives. After this operation, 1115 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [860 B] Get:2 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpython3.10-minimal amd64 3.10.5-1 [804 kB] Get:3 http://ftpmaster.internal/ubuntu kinetic/main amd64 libexpat1 amd64 2.4.8-1 [90.6 kB] Get:4 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3.10-minimal amd64 3.10.5-1 [2228 kB] Get:5 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3-minimal amd64 3.10.4-0ubuntu2 [24.4 kB] Get:6 http://ftpmaster.internal/ubuntu kinetic/main amd64 media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmpdec3 amd64 2.5.1-2build2 [86.8 kB] Get:8 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpython3.10-stdlib amd64 3.10.5-1 [1805 kB] Get:9 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3.10 amd64 3.10.5-1 [491 kB] Get:10 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpython3-stdlib amd64 3.10.4-0ubuntu2 [6990 B] Get:11 http://ftpmaster.internal/ubuntu kinetic/main amd64 python3 amd64 3.10.4-0ubuntu2 [22.8 kB] Get:12 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsigsegv2 amd64 2.13-1ubuntu3 [14.6 kB] Get:13 http://ftpmaster.internal/ubuntu kinetic/main amd64 gawk amd64 1:5.1.0-1build3 [447 kB] Get:14 http://ftpmaster.internal/ubuntu kinetic/main amd64 ucf all 3.0043 [56.1 kB] Get:15 http://ftpmaster.internal/ubuntu kinetic/universe amd64 tex-common all 6.17 [33.7 kB] Get:16 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmd0 amd64 1.0.4-1build1 [23.0 kB] Get:17 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbsd0 amd64 0.11.6-1 [44.5 kB] Get:18 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdbus-1-3 amd64 1.12.20-2ubuntu4 [188 kB] Get:19 http://ftpmaster.internal/ubuntu kinetic/main amd64 libelf1 amd64 0.187-1 [51.3 kB] Get:20 http://ftpmaster.internal/ubuntu kinetic/main amd64 libglib2.0-0 amd64 2.72.2-2 [1435 kB] Get:21 http://ftpmaster.internal/ubuntu kinetic/main amd64 libicu71 amd64 71.1-3 [10.6 MB] Get:22 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxml2 amd64 2.9.14+dfsg-1 [756 kB] Get:23 http://ftpmaster.internal/ubuntu kinetic/main amd64 libyaml-0-2 amd64 0.2.2-1build2 [51.6 kB] Get:24 http://ftpmaster.internal/ubuntu kinetic/main amd64 bsdextrautils amd64 2.38-4ubuntu1 [71.1 kB] Get:25 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic-mgc amd64 1:5.41-4 [257 kB] Get:26 http://ftpmaster.internal/ubuntu kinetic/main amd64 libmagic1 amd64 1:5.41-4 [87.3 kB] Get:27 http://ftpmaster.internal/ubuntu kinetic/main amd64 file amd64 1:5.41-4 [21.5 kB] Get:28 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext-base amd64 0.21-6 [37.9 kB] Get:29 http://ftpmaster.internal/ubuntu kinetic/main amd64 libuchardet0 amd64 0.0.7-1build2 [76.9 kB] Get:30 http://ftpmaster.internal/ubuntu kinetic/main amd64 groff-base amd64 1.22.4-8build1 [955 kB] Get:31 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdrm-common all 2.4.110-1ubuntu1 [5360 B] Get:32 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdrm2 amd64 2.4.110-1ubuntu1 [37.7 kB] Get:33 http://ftpmaster.internal/ubuntu kinetic/main amd64 libedit2 amd64 3.1-20210910-1build1 [96.8 kB] Get:34 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpipeline1 amd64 1.5.6-1 [23.1 kB] Get:35 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxau6 amd64 1:1.0.9-1build5 [7634 B] Get:36 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu5 [10.9 kB] Get:37 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb1 amd64 1.14-3ubuntu3 [49.0 kB] Get:38 http://ftpmaster.internal/ubuntu kinetic/main amd64 libx11-data all 2:1.7.5-1 [119 kB] Get:39 http://ftpmaster.internal/ubuntu kinetic/main amd64 libx11-6 amd64 2:1.7.5-1 [666 kB] Get:40 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxext6 amd64 2:1.3.4-1build1 [31.8 kB] Get:41 http://ftpmaster.internal/ubuntu kinetic/main amd64 man-db amd64 2.10.2-1 [1187 kB] Get:42 http://ftpmaster.internal/ubuntu kinetic/main amd64 libnspr4 amd64 2:4.34-1 [116 kB] Get:43 http://ftpmaster.internal/ubuntu kinetic/main amd64 libnss3 amd64 2:3.79-1 [1378 kB] Get:44 http://ftpmaster.internal/ubuntu kinetic/main amd64 ca-certificates-java all 20190909 [12.1 kB] Get:45 http://ftpmaster.internal/ubuntu kinetic/main amd64 java-common all 0.72build2 [6782 B] Get:46 http://ftpmaster.internal/ubuntu kinetic/main amd64 libavahi-common-data amd64 0.8-5ubuntu5 [23.9 kB] Get:47 http://ftpmaster.internal/ubuntu kinetic/main amd64 libavahi-common3 amd64 0.8-5ubuntu5 [23.7 kB] Get:48 http://ftpmaster.internal/ubuntu kinetic/main amd64 libavahi-client3 amd64 0.8-5ubuntu5 [28.1 kB] Get:49 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcups2 amd64 2.4.2-1ubuntu1 [260 kB] Get:50 http://ftpmaster.internal/ubuntu kinetic/main amd64 liblcms2-2 amd64 2.12~rc1-2build2 [159 kB] Get:51 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg-turbo8 amd64 2.1.2-0ubuntu1 [134 kB] Get:52 http://ftpmaster.internal/ubuntu kinetic/main amd64 libjpeg8 amd64 8c-2ubuntu10 [2264 B] Get:53 http://ftpmaster.internal/ubuntu kinetic/main amd64 libbrotli1 amd64 1.0.9-2build6 [315 kB] Get:54 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfreetype6 amd64 2.12.1+dfsg-3 [387 kB] Get:55 http://ftpmaster.internal/ubuntu kinetic/main amd64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:56 http://ftpmaster.internal/ubuntu kinetic/main amd64 fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:57 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfontconfig1 amd64 2.13.1-4.4ubuntu1 [129 kB] Get:58 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasound2-data all 1.2.6.1-2 [19.1 kB] Get:59 http://ftpmaster.internal/ubuntu kinetic/main amd64 libasound2 amd64 1.2.6.1-2 [384 kB] Get:60 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgraphite2-3 amd64 1.3.14-1build2 [71.3 kB] Get:61 http://ftpmaster.internal/ubuntu kinetic/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu4 [352 kB] Get:62 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpcsclite1 amd64 1.9.8-1 [19.5 kB] Get:63 http://ftpmaster.internal/ubuntu kinetic/main amd64 openjdk-11-jre-headless amd64 11.0.15+10-0ubuntu0.22.04.1 [41.5 MB] Get:64 http://ftpmaster.internal/ubuntu kinetic/main amd64 default-jre-headless amd64 2:1.11-72build2 [3042 B] Get:65 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ant all 1.10.12-1 [2100 kB] Get:66 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ant-optional all 1.10.12-1 [368 kB] Get:67 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libantlr3-runtime-java all 3.5.2-9 [164 kB] Get:68 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libstringtemplate4-java all 4.0.8-2.1 [234 kB] Get:69 http://ftpmaster.internal/ubuntu kinetic/universe amd64 antlr3 all 3.5.2-9 [1138 kB] Get:70 http://ftpmaster.internal/ubuntu kinetic/main amd64 m4 amd64 1.4.18-5ubuntu2 [199 kB] Get:71 http://ftpmaster.internal/ubuntu kinetic/main amd64 autoconf all 2.71-2 [338 kB] Get:72 http://ftpmaster.internal/ubuntu kinetic/main amd64 autotools-dev all 20220109.1 [44.9 kB] Get:73 http://ftpmaster.internal/ubuntu kinetic/main amd64 automake all 1:1.16.5-1.3 [558 kB] Get:74 http://ftpmaster.internal/ubuntu kinetic/main amd64 autopoint all 0.21-6 [421 kB] Get:75 http://ftpmaster.internal/ubuntu kinetic/main amd64 libboost-serialization1.74.0 amd64 1.74.0-14ubuntu4 [327 kB] Get:76 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgflags2.2 amd64 2.2.2-2 [78.1 kB] Get:77 http://ftpmaster.internal/ubuntu kinetic/main amd64 libunwind8 amd64 1.3.2-2build3 [54.5 kB] Get:78 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libgoogle-glog0v6 amd64 0.6.0-1 [63.9 kB] Get:79 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcassie1v5 amd64 1.0.9-3build2 [39.1 kB] Get:80 http://ftpmaster.internal/ubuntu kinetic/universe amd64 cassiopee amd64 1.0.9-3build2 [16.1 kB] Get:81 http://ftpmaster.internal/ubuntu kinetic/universe amd64 chrpath amd64 0.16-2 [13.2 kB] Get:82 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdebhelper-perl all 13.7.1ubuntu1 [66.9 kB] Get:83 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtool all 2.4.7-4 [166 kB] Get:84 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-autoreconf all 20 [16.1 kB] Get:85 http://ftpmaster.internal/ubuntu kinetic/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:86 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsub-override-perl all 0.09-3 [9756 B] Get:87 http://ftpmaster.internal/ubuntu kinetic/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:88 http://ftpmaster.internal/ubuntu kinetic/main amd64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:89 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdw1 amd64 0.187-1 [247 kB] Get:90 http://ftpmaster.internal/ubuntu kinetic/main amd64 debugedit amd64 1:5.0-4build1 [47.2 kB] Get:91 http://ftpmaster.internal/ubuntu kinetic/main amd64 dwz amd64 0.14-1build2 [105 kB] Get:92 http://ftpmaster.internal/ubuntu kinetic/main amd64 gettext amd64 0.21-6 [862 kB] Get:93 http://ftpmaster.internal/ubuntu kinetic/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:94 http://ftpmaster.internal/ubuntu kinetic/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:95 http://ftpmaster.internal/ubuntu kinetic/main amd64 debhelper all 13.7.1ubuntu1 [940 kB] Get:96 http://ftpmaster.internal/ubuntu kinetic/main amd64 libglvnd0 amd64 1.4.0-1 [73.6 kB] Get:97 http://ftpmaster.internal/ubuntu kinetic/main amd64 libglapi-mesa amd64 22.0.5-1ubuntu1 [32.0 kB] Get:98 http://ftpmaster.internal/ubuntu kinetic/main amd64 libx11-xcb1 amd64 2:1.7.5-1 [7790 B] Get:99 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-dri2-0 amd64 1.14-3ubuntu3 [7206 B] Get:100 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-dri3-0 amd64 1.14-3ubuntu3 [6968 B] Get:101 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-glx0 amd64 1.14-3ubuntu3 [25.9 kB] Get:102 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-present0 amd64 1.14-3ubuntu3 [5734 B] Get:103 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-shm0 amd64 1.14-3ubuntu3 [5780 B] Get:104 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-sync1 amd64 1.14-3ubuntu3 [9416 B] Get:105 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-xfixes0 amd64 1.14-3ubuntu3 [9996 B] Get:106 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxfixes3 amd64 1:6.0.0-1 [11.7 kB] Get:107 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxshmfence1 amd64 1.3-1build4 [5394 B] Get:108 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxxf86vm1 amd64 1:1.1.4-1build3 [10.4 kB] Get:109 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdrm-amdgpu1 amd64 2.4.110-1ubuntu1 [20.0 kB] Get:110 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdrm-nouveau2 amd64 2.4.110-1ubuntu1 [17.4 kB] Get:111 http://ftpmaster.internal/ubuntu kinetic/main amd64 libdrm-radeon1 amd64 2.4.110-1ubuntu1 [21.5 kB] Get:112 http://ftpmaster.internal/ubuntu kinetic/main amd64 libllvm14 amd64 1:14.0.5-1 [23.8 MB] Get:113 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsensors-config all 1:3.6.0-7ubuntu1 [5274 B] Get:114 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsensors5 amd64 1:3.6.0-7ubuntu1 [26.3 kB] Get:115 http://ftpmaster.internal/ubuntu kinetic/main amd64 libvulkan1 amd64 1.3.216.0-1 [130 kB] Get:116 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgl1-mesa-dri amd64 22.0.5-1ubuntu1 [7434 kB] Get:117 http://ftpmaster.internal/ubuntu kinetic/main amd64 libglx-mesa0 amd64 22.0.5-1ubuntu1 [150 kB] Get:118 http://ftpmaster.internal/ubuntu kinetic/main amd64 libglx0 amd64 1.4.0-1 [41.0 kB] Get:119 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgl1 amd64 1.4.0-1 [110 kB] Get:120 http://ftpmaster.internal/ubuntu kinetic/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] Get:121 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxi6 amd64 2:1.8-1build1 [32.6 kB] Get:122 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] Get:123 http://ftpmaster.internal/ubuntu kinetic/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:124 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxtst6 amd64 2:1.2.3-1.1 [13.8 kB] Get:125 http://ftpmaster.internal/ubuntu kinetic/main amd64 openjdk-11-jre amd64 11.0.15+10-0ubuntu0.22.04.1 [194 kB] Get:126 http://ftpmaster.internal/ubuntu kinetic/main amd64 default-jre amd64 2:1.11-72build2 [896 B] Get:127 http://ftpmaster.internal/ubuntu kinetic/main amd64 openjdk-11-jdk-headless amd64 11.0.15+10-0ubuntu0.22.04.1 [214 MB] Get:128 http://ftpmaster.internal/ubuntu kinetic/main amd64 default-jdk-headless amd64 2:1.11-72build2 [942 B] Get:129 http://ftpmaster.internal/ubuntu kinetic/main amd64 openjdk-11-jdk amd64 11.0.15+10-0ubuntu0.22.04.1 [2569 kB] Get:130 http://ftpmaster.internal/ubuntu kinetic/main amd64 default-jdk amd64 2:1.11-72build2 [908 B] Get:131 http://ftpmaster.internal/ubuntu kinetic/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] Get:132 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libhamcrest-java all 1.3-9 [386 kB] Get:133 http://ftpmaster.internal/ubuntu kinetic/universe amd64 junit4 all 4.13.2-1 [344 kB] Get:134 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:135 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libapache-pom-java all 18-1 [4720 B] Get:136 http://ftpmaster.internal/ubuntu kinetic/main amd64 libarchive13 amd64 3.6.0-1ubuntu1 [368 kB] Get:137 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] Get:138 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-pool-java all 1.6-4 [108 kB] Get:139 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-dbcp-java all 1.4-7 [156 kB] Get:140 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] Get:141 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libguava-java all 29.0-6 [2418 kB] Get:142 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjgraph-java all 5.12.4.2+dfsg-5.1 [188 kB] Get:143 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libjgrapht0.8-java all 0.8.3-5 [214 kB] Get:144 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libbiojava1.9-java all 1:1.9.5+dfsg-2 [3099 kB] Get:145 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libbiojava-java all 1:1.9.5+dfsg-2 [4128 B] Get:146 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpixman-1-0 amd64 0.40.0-1build4 [264 kB] Get:147 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxcb-render0 amd64 1.14-3ubuntu3 [16.4 kB] Get:148 http://ftpmaster.internal/ubuntu kinetic/main amd64 libcairo2 amd64 1.16.0-5ubuntu2 [628 kB] Get:149 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-cli-java all 1.4-2 [55.8 kB] Get:150 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-collections3-java all 3.2.2-2 [525 kB] Get:151 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:152 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-lang-java all 2.6-10 [270 kB] Get:153 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-logging-java all 1.2-3 [59.9 kB] Get:154 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libcommons-configuration-java all 1.10-5 [328 kB] Get:155 http://ftpmaster.internal/ubuntu kinetic/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] Get:156 http://ftpmaster.internal/ubuntu kinetic/main amd64 libkpathsea6 amd64 2022.20220321.62855-4 [59.4 kB] Get:157 http://ftpmaster.internal/ubuntu kinetic/universe amd64 liblog4j1.2-java all 1.2.17-11 [439 kB] Get:158 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libmail-java all 1.6.5-1 [678 kB] Get:159 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libossp-uuid16 amd64 1.6.2-1.5build9 [31.4 kB] Get:160 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpaper1 amd64 1.1.28build2 [13.8 kB] Get:161 http://ftpmaster.internal/ubuntu kinetic/main amd64 libpaper-utils amd64 1.1.28build2 [8674 B] Get:162 http://ftpmaster.internal/ubuntu kinetic/main amd64 libptexenc1 amd64 2022.20220321.62855-4 [38.4 kB] Get:163 http://ftpmaster.internal/ubuntu kinetic/main amd64 rubygems-integration all 1.18 [5336 B] Get:164 http://ftpmaster.internal/ubuntu kinetic/main amd64 ruby3.0 amd64 3.0.2-7ubuntu2 [50.1 kB] Get:165 http://ftpmaster.internal/ubuntu kinetic/main amd64 ruby-rubygems all 3.3.15-1 [231 kB] Get:166 http://ftpmaster.internal/ubuntu kinetic/main amd64 ruby amd64 1:3.0~exp1 [5100 B] Get:167 http://ftpmaster.internal/ubuntu kinetic/main amd64 rake all 13.0.6-3 [61.6 kB] Get:168 http://ftpmaster.internal/ubuntu kinetic/main amd64 ruby-net-telnet all 0.1.1-2.1 [13.1 kB] Get:169 http://ftpmaster.internal/ubuntu kinetic/main amd64 ruby-webrick all 1.7.0-3 [51.8 kB] Get:170 http://ftpmaster.internal/ubuntu kinetic/main amd64 ruby-xmlrpc all 0.3.2-2 [24.8 kB] Get:171 http://ftpmaster.internal/ubuntu kinetic/main amd64 libruby3.0 amd64 3.0.2-7ubuntu2 [5115 kB] Get:172 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] Get:173 http://ftpmaster.internal/ubuntu kinetic/main amd64 libsynctex2 amd64 2022.20220321.62855-4 [54.8 kB] Get:174 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libteckit0 amd64 2.5.11+ds1-1 [421 kB] Get:175 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtexlua53-5 amd64 2022.20220321.62855-4 [118 kB] Get:176 http://ftpmaster.internal/ubuntu kinetic/main amd64 libtexluajit2 amd64 2022.20220321.62855-4 [264 kB] Get:177 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libxml-commons-external-java all 1.4.01-5 [240 kB] Get:178 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] Get:179 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libxerces2-java all 2.12.2-1 [1430 kB] Get:180 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libxalan2-java all 2.7.2-4 [3416 kB] Get:181 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxt6 amd64 1:1.2.1-1 [177 kB] Get:182 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxmu6 amd64 2:1.1.3-3 [49.6 kB] Get:183 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxpm4 amd64 1:3.5.12-1build2 [36.2 kB] Get:184 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxaw7 amd64 2:1.0.14-1 [191 kB] Get:185 http://ftpmaster.internal/ubuntu kinetic/main amd64 libxft2 amd64 2.3.4-1 [41.8 kB] Get:186 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] Get:187 http://ftpmaster.internal/ubuntu kinetic/universe amd64 preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:188 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ruby-text all 1.3.1-1 [13.8 kB] Get:189 http://ftpmaster.internal/ubuntu kinetic/universe amd64 ruby-cassiopee all 0.1.13-1.1 [11.3 kB] Get:190 http://ftpmaster.internal/ubuntu kinetic/universe amd64 swi-prolog-core amd64 8.4.2+dfsg-2ubuntu1 [1493 kB] Get:191 http://ftpmaster.internal/ubuntu kinetic/universe amd64 swi-prolog-doc all 8.4.2+dfsg-2ubuntu1 [1504 kB] Get:192 http://ftpmaster.internal/ubuntu kinetic/universe amd64 swi-prolog-core-packages amd64 8.4.2+dfsg-2ubuntu1 [1335 kB] Get:193 http://ftpmaster.internal/ubuntu kinetic/universe amd64 swi-prolog-nox amd64 8.4.2+dfsg-2ubuntu1 [165 kB] Get:194 http://ftpmaster.internal/ubuntu kinetic/universe amd64 swi-prolog-x amd64 8.4.2+dfsg-2ubuntu1 [2314 kB] Get:195 http://ftpmaster.internal/ubuntu kinetic/universe amd64 swi-prolog amd64 8.4.2+dfsg-2ubuntu1 [9122 B] Get:196 http://ftpmaster.internal/ubuntu kinetic/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] Get:197 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-binaries amd64 2022.20220321.62855-4 [9996 kB] Get:198 http://ftpmaster.internal/ubuntu kinetic/main amd64 xdg-utils all 1.1.3-4.1ubuntu2 [62.0 kB] Get:199 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-base all 2022.20220405-2 [21.3 MB] Get:200 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-fonts-recommended all 2022.20220405-2 [4973 kB] Get:201 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-latex-base all 2022.20220405-2 [1129 kB] Get:202 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-latex-recommended all 2022.20220405-2 [14.4 MB] Get:203 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive all 2022.20220405-2 [14.3 kB] Get:204 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:205 http://ftpmaster.internal/ubuntu kinetic/universe amd64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:206 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-pictures all 2022.20220405-2 [8726 kB] Get:207 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-latex-extra all 2022.20220405-3 [14.2 MB] Get:208 http://ftpmaster.internal/ubuntu kinetic/universe amd64 texlive-plain-generic all 2022.20220405-3 [27.6 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 470 MB in 16s (29.8 MB/s) Selecting previously unselected package libpython3.10-minimal:amd64. (Reading database ... 13495 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.5-1_amd64.deb ... Unpacking libpython3.10-minimal:amd64 (3.10.5-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.4.8-1_amd64.deb ... Unpacking libexpat1:amd64 (2.4.8-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.5-1_amd64.deb ... Unpacking python3.10-minimal (3.10.5-1) ... Setting up libpython3.10-minimal:amd64 (3.10.5-1) ... Setting up libexpat1:amd64 (2.4.8-1) ... Setting up python3.10-minimal (3.10.5-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13797 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.4-0ubuntu2_amd64.deb ... Unpacking python3-minimal (3.10.4-0ubuntu2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2build2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2build2) ... Selecting previously unselected package libpython3.10-stdlib:amd64. Preparing to unpack .../3-libpython3.10-stdlib_3.10.5-1_amd64.deb ... Unpacking libpython3.10-stdlib:amd64 (3.10.5-1) ... Selecting previously unselected package python3.10. Preparing to unpack .../4-python3.10_3.10.5-1_amd64.deb ... Unpacking python3.10 (3.10.5-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../5-libpython3-stdlib_3.10.4-0ubuntu2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.10.4-0ubuntu2) ... Setting up python3-minimal (3.10.4-0ubuntu2) ... Selecting previously unselected package python3. (Reading database ... 14198 files and directories currently installed.) Preparing to unpack .../python3_3.10.4-0ubuntu2_amd64.deb ... Unpacking python3 (3.10.4-0ubuntu2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.13-1ubuntu3_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1ubuntu3) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu3) ... Selecting previously unselected package gawk. (Reading database ... 14225 files and directories currently installed.) Preparing to unpack .../000-gawk_1%3a5.1.0-1build3_amd64.deb ... Unpacking gawk (1:5.1.0-1build3) ... Selecting previously unselected package ucf. Preparing to unpack .../001-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package tex-common. Preparing to unpack .../002-tex-common_6.17_all.deb ... Unpacking tex-common (6.17) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../003-libmd0_1.0.4-1build1_amd64.deb ... Unpacking libmd0:amd64 (1.0.4-1build1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../004-libbsd0_0.11.6-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.6-1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../005-libdbus-1-3_1.12.20-2ubuntu4_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-2ubuntu4) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../006-libelf1_0.187-1_amd64.deb ... Unpacking libelf1:amd64 (0.187-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../007-libglib2.0-0_2.72.2-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.72.2-2) ... Selecting previously unselected package libicu71:amd64. Preparing to unpack .../008-libicu71_71.1-3_amd64.deb ... Unpacking libicu71:amd64 (71.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../009-libxml2_2.9.14+dfsg-1_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../010-libyaml-0-2_0.2.2-1build2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.2-1build2) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.38-4ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.38-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.21-6_amd64.deb ... Unpacking gettext-base (0.21-6) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../016-libuchardet0_0.0.7-1build2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../017-groff-base_1.22.4-8build1_amd64.deb ... Unpacking groff-base (1.22.4-8build1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../018-libdrm-common_2.4.110-1ubuntu1_all.deb ... Unpacking libdrm-common (2.4.110-1ubuntu1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../019-libdrm2_2.4.110-1ubuntu1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.110-1ubuntu1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../020-libedit2_3.1-20210910-1build1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20210910-1build1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../021-libpipeline1_1.5.6-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.6-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../022-libxau6_1%3a1.0.9-1build5_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1build5) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../023-libxdmcp6_1%3a1.1.3-0ubuntu5_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../024-libxcb1_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../025-libx11-data_2%3a1.7.5-1_all.deb ... Unpacking libx11-data (2:1.7.5-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../026-libx11-6_2%3a1.7.5-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.5-1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../027-libxext6_2%3a1.3.4-1build1_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../028-man-db_2.10.2-1_amd64.deb ... Unpacking man-db (2.10.2-1) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../029-libnspr4_2%3a4.34-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.34-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../030-libnss3_2%3a3.79-1_amd64.deb ... Unpacking libnss3:amd64 (2:3.79-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../031-ca-certificates-java_20190909_all.deb ... Unpacking ca-certificates-java (20190909) ... Selecting previously unselected package java-common. Preparing to unpack .../032-java-common_0.72build2_all.deb ... Unpacking java-common (0.72build2) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../033-libavahi-common-data_0.8-5ubuntu5_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5ubuntu5) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../034-libavahi-common3_0.8-5ubuntu5_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5ubuntu5) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../035-libavahi-client3_0.8-5ubuntu5_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-5ubuntu5) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../036-libcups2_2.4.2-1ubuntu1_amd64.deb ... Unpacking libcups2:amd64 (2.4.2-1ubuntu1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../037-liblcms2-2_2.12~rc1-2build2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2build2) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../038-libjpeg-turbo8_2.1.2-0ubuntu1_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.1.2-0ubuntu1) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../039-libjpeg8_8c-2ubuntu10_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu10) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../040-libbrotli1_1.0.9-2build6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2build6) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../041-libfreetype6_2.12.1+dfsg-3_amd64.deb ... Unpacking libfreetype6:amd64 (2.12.1+dfsg-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../042-fonts-dejavu-core_2.37-2build1_all.deb ... Unpacking fonts-dejavu-core (2.37-2build1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../043-fontconfig-config_2.13.1-4.4ubuntu1_all.deb ... Unpacking fontconfig-config (2.13.1-4.4ubuntu1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../044-libfontconfig1_2.13.1-4.4ubuntu1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.4ubuntu1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../045-libasound2-data_1.2.6.1-2_all.deb ... Unpacking libasound2-data (1.2.6.1-2) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../046-libasound2_1.2.6.1-2_amd64.deb ... Unpacking libasound2:amd64 (1.2.6.1-2) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../047-libgraphite2-3_1.3.14-1build2_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1build2) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../048-libharfbuzz0b_2.7.4-1ubuntu4_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.7.4-1ubuntu4) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../049-libpcsclite1_1.9.8-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.9.8-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../050-openjdk-11-jre-headless_11.0.15+10-0ubuntu0.22.04.1_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../051-default-jre-headless_2%3a1.11-72build2_amd64.deb ... Unpacking default-jre-headless (2:1.11-72build2) ... Selecting previously unselected package ant. Preparing to unpack .../052-ant_1.10.12-1_all.deb ... Unpacking ant (1.10.12-1) ... Selecting previously unselected package ant-optional. Preparing to unpack .../053-ant-optional_1.10.12-1_all.deb ... Unpacking ant-optional (1.10.12-1) ... Selecting previously unselected package libantlr3-runtime-java. Preparing to unpack .../054-libantlr3-runtime-java_3.5.2-9_all.deb ... Unpacking libantlr3-runtime-java (3.5.2-9) ... Selecting previously unselected package libstringtemplate4-java. Preparing to unpack .../055-libstringtemplate4-java_4.0.8-2.1_all.deb ... Unpacking libstringtemplate4-java (4.0.8-2.1) ... Selecting previously unselected package antlr3. Preparing to unpack .../056-antlr3_3.5.2-9_all.deb ... Unpacking antlr3 (3.5.2-9) ... Selecting previously unselected package m4. Preparing to unpack .../057-m4_1.4.18-5ubuntu2_amd64.deb ... Unpacking m4 (1.4.18-5ubuntu2) ... Selecting previously unselected package autoconf. Preparing to unpack .../058-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../059-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../060-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../061-autopoint_0.21-6_all.deb ... Unpacking autopoint (0.21-6) ... Selecting previously unselected package libboost-serialization1.74.0:amd64. Preparing to unpack .../062-libboost-serialization1.74.0_1.74.0-14ubuntu4_amd64.deb ... Unpacking libboost-serialization1.74.0:amd64 (1.74.0-14ubuntu4) ... Selecting previously unselected package libgflags2.2. Preparing to unpack .../063-libgflags2.2_2.2.2-2_amd64.deb ... Unpacking libgflags2.2 (2.2.2-2) ... Selecting previously unselected package libunwind8:amd64. Preparing to unpack .../064-libunwind8_1.3.2-2build3_amd64.deb ... Unpacking libunwind8:amd64 (1.3.2-2build3) ... Selecting previously unselected package libgoogle-glog0v6. Preparing to unpack .../065-libgoogle-glog0v6_0.6.0-1_amd64.deb ... Unpacking libgoogle-glog0v6 (0.6.0-1) ... Selecting previously unselected package libcassie1v5. Preparing to unpack .../066-libcassie1v5_1.0.9-3build2_amd64.deb ... Unpacking libcassie1v5 (1.0.9-3build2) ... Selecting previously unselected package cassiopee. Preparing to unpack .../067-cassiopee_1.0.9-3build2_amd64.deb ... Unpacking cassiopee (1.0.9-3build2) ... Selecting previously unselected package chrpath. Preparing to unpack .../068-chrpath_0.16-2_amd64.deb ... Unpacking chrpath (0.16-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../069-libdebhelper-perl_13.7.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.7.1ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../070-libtool_2.4.7-4_all.deb ... Unpacking libtool (2.4.7-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../071-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../072-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../073-libsub-override-perl_0.09-3_all.deb ... Unpacking libsub-override-perl (0.09-3) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../074-libfile-stripnondeterminism-perl_1.13.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../075-dh-strip-nondeterminism_1.13.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.0-1) ... Selecting previously unselected package libdw1:amd64. Preparing to unpack .../076-libdw1_0.187-1_amd64.deb ... Unpacking libdw1:amd64 (0.187-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../077-debugedit_1%3a5.0-4build1_amd64.deb ... Unpacking debugedit (1:5.0-4build1) ... Selecting previously unselected package dwz. Preparing to unpack .../078-dwz_0.14-1build2_amd64.deb ... Unpacking dwz (0.14-1build2) ... Selecting previously unselected package gettext. Preparing to unpack .../079-gettext_0.21-6_amd64.deb ... Unpacking gettext (0.21-6) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../080-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../081-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../082-debhelper_13.7.1ubuntu1_all.deb ... Unpacking debhelper (13.7.1ubuntu1) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../083-libglvnd0_1.4.0-1_amd64.deb ... Unpacking libglvnd0:amd64 (1.4.0-1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../084-libglapi-mesa_22.0.5-1ubuntu1_amd64.deb ... Unpacking libglapi-mesa:amd64 (22.0.5-1ubuntu1) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../085-libx11-xcb1_2%3a1.7.5-1_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.7.5-1) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../086-libxcb-dri2-0_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../087-libxcb-dri3-0_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../088-libxcb-glx0_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../089-libxcb-present0_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-present0:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../090-libxcb-shm0_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../091-libxcb-sync1_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../092-libxcb-xfixes0_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../093-libxfixes3_1%3a6.0.0-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:6.0.0-1) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../094-libxshmfence1_1.3-1build4_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3-1build4) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../095-libxxf86vm1_1%3a1.1.4-1build3_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1build3) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../096-libdrm-amdgpu1_2.4.110-1ubuntu1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.110-1ubuntu1) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../097-libdrm-nouveau2_2.4.110-1ubuntu1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.110-1ubuntu1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../098-libdrm-radeon1_2.4.110-1ubuntu1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.110-1ubuntu1) ... Selecting previously unselected package libllvm14:amd64. Preparing to unpack .../099-libllvm14_1%3a14.0.5-1_amd64.deb ... Unpacking libllvm14:amd64 (1:14.0.5-1) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../100-libsensors-config_1%3a3.6.0-7ubuntu1_all.deb ... Unpacking libsensors-config (1:3.6.0-7ubuntu1) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../101-libsensors5_1%3a3.6.0-7ubuntu1_amd64.deb ... Unpacking libsensors5:amd64 (1:3.6.0-7ubuntu1) ... Selecting previously unselected package libvulkan1:amd64. Preparing to unpack .../102-libvulkan1_1.3.216.0-1_amd64.deb ... Unpacking libvulkan1:amd64 (1.3.216.0-1) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../103-libgl1-mesa-dri_22.0.5-1ubuntu1_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (22.0.5-1ubuntu1) ... Selecting previously unselected package libglx-mesa0:amd64. Preparing to unpack .../104-libglx-mesa0_22.0.5-1ubuntu1_amd64.deb ... Unpacking libglx-mesa0:amd64 (22.0.5-1ubuntu1) ... Selecting previously unselected package libglx0:amd64. Preparing to unpack .../105-libglx0_1.4.0-1_amd64.deb ... Unpacking libglx0:amd64 (1.4.0-1) ... Selecting previously unselected package libgl1:amd64. Preparing to unpack .../106-libgl1_1.4.0-1_amd64.deb ... Unpacking libgl1:amd64 (1.4.0-1) ... Selecting previously unselected package libgif7:amd64. Preparing to unpack .../107-libgif7_5.2.1-2.5_amd64.deb ... Unpacking libgif7:amd64 (5.2.1-2.5) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../108-libxi6_2%3a1.8-1build1_amd64.deb ... Unpacking libxi6:amd64 (2:1.8-1build1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../109-libxrender1_1%3a0.9.10-1.1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... Selecting previously unselected package x11-common. Preparing to unpack .../110-x11-common_1%3a7.7+23ubuntu2_all.deb ... Unpacking x11-common (1:7.7+23ubuntu2) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../111-libxtst6_2%3a1.2.3-1.1_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.3-1.1) ... Selecting previously unselected package openjdk-11-jre:amd64. Preparing to unpack .../112-openjdk-11-jre_11.0.15+10-0ubuntu0.22.04.1_amd64.deb ... Unpacking openjdk-11-jre:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... Selecting previously unselected package default-jre. Preparing to unpack .../113-default-jre_2%3a1.11-72build2_amd64.deb ... Unpacking default-jre (2:1.11-72build2) ... Selecting previously unselected package openjdk-11-jdk-headless:amd64. Preparing to unpack .../114-openjdk-11-jdk-headless_11.0.15+10-0ubuntu0.22.04.1_amd64.deb ... Unpacking openjdk-11-jdk-headless:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... Selecting previously unselected package default-jdk-headless. Preparing to unpack .../115-default-jdk-headless_2%3a1.11-72build2_amd64.deb ... Unpacking default-jdk-headless (2:1.11-72build2) ... Selecting previously unselected package openjdk-11-jdk:amd64. Preparing to unpack .../116-openjdk-11-jdk_11.0.15+10-0ubuntu0.22.04.1_amd64.deb ... Unpacking openjdk-11-jdk:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... Selecting previously unselected package default-jdk. Preparing to unpack .../117-default-jdk_2%3a1.11-72build2_amd64.deb ... Unpacking default-jdk (2:1.11-72build2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../118-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package libhamcrest-java. Preparing to unpack .../119-libhamcrest-java_1.3-9_all.deb ... Unpacking libhamcrest-java (1.3-9) ... Selecting previously unselected package junit4. Preparing to unpack .../120-junit4_4.13.2-1_all.deb ... Unpacking junit4 (4.13.2-1) ... Selecting previously unselected package libactivation-java. Preparing to unpack .../121-libactivation-java_1.2.0-2_all.deb ... Unpacking libactivation-java (1.2.0-2) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../122-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../123-libarchive13_3.6.0-1ubuntu1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.0-1ubuntu1) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../124-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libcommons-pool-java. Preparing to unpack .../125-libcommons-pool-java_1.6-4_all.deb ... Unpacking libcommons-pool-java (1.6-4) ... Selecting previously unselected package libcommons-dbcp-java. Preparing to unpack .../126-libcommons-dbcp-java_1.4-7_all.deb ... Unpacking libcommons-dbcp-java (1.4-7) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../127-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../128-libguava-java_29.0-6_all.deb ... Unpacking libguava-java (29.0-6) ... Selecting previously unselected package libjgraph-java. Preparing to unpack .../129-libjgraph-java_5.12.4.2+dfsg-5.1_all.deb ... Unpacking libjgraph-java (5.12.4.2+dfsg-5.1) ... Selecting previously unselected package libjgrapht0.8-java. Preparing to unpack .../130-libjgrapht0.8-java_0.8.3-5_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-5) ... Selecting previously unselected package libbiojava1.9-java. Preparing to unpack .../131-libbiojava1.9-java_1%3a1.9.5+dfsg-2_all.deb ... Unpacking libbiojava1.9-java (1:1.9.5+dfsg-2) ... Selecting previously unselected package libbiojava-java. Preparing to unpack .../132-libbiojava-java_1%3a1.9.5+dfsg-2_all.deb ... Unpacking libbiojava-java (1:1.9.5+dfsg-2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../133-libpixman-1-0_0.40.0-1build4_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.40.0-1build4) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../134-libxcb-render0_1.14-3ubuntu3_amd64.deb ... Unpacking libxcb-render0:amd64 (1.14-3ubuntu3) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../135-libcairo2_1.16.0-5ubuntu2_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-5ubuntu2) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../136-libcommons-cli-java_1.4-2_all.deb ... Unpacking libcommons-cli-java (1.4-2) ... Selecting previously unselected package libcommons-collections3-java. Preparing to unpack .../137-libcommons-collections3-java_3.2.2-2_all.deb ... Unpacking libcommons-collections3-java (3.2.2-2) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../138-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-lang-java. Preparing to unpack .../139-libcommons-lang-java_2.6-10_all.deb ... Unpacking libcommons-lang-java (2.6-10) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../140-libcommons-logging-java_1.2-3_all.deb ... Unpacking libcommons-logging-java (1.2-3) ... Selecting previously unselected package libcommons-configuration-java. Preparing to unpack .../141-libcommons-configuration-java_1.10-5_all.deb ... Unpacking libcommons-configuration-java (1.10-5) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../142-libice6_2%3a1.0.10-1build2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.10-1build2) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../143-libkpathsea6_2022.20220321.62855-4_amd64.deb ... Unpacking libkpathsea6:amd64 (2022.20220321.62855-4) ... Selecting previously unselected package liblog4j1.2-java. Preparing to unpack .../144-liblog4j1.2-java_1.2.17-11_all.deb ... Unpacking liblog4j1.2-java (1.2.17-11) ... Selecting previously unselected package libmail-java. Preparing to unpack .../145-libmail-java_1.6.5-1_all.deb ... Unpacking libmail-java (1.6.5-1) ... Selecting previously unselected package libossp-uuid16:amd64. Preparing to unpack .../146-libossp-uuid16_1.6.2-1.5build9_amd64.deb ... Unpacking libossp-uuid16:amd64 (1.6.2-1.5build9) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../147-libpaper1_1.1.28build2_amd64.deb ... Unpacking libpaper1:amd64 (1.1.28build2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../148-libpaper-utils_1.1.28build2_amd64.deb ... Unpacking libpaper-utils (1.1.28build2) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../149-libptexenc1_2022.20220321.62855-4_amd64.deb ... Unpacking libptexenc1:amd64 (2022.20220321.62855-4) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../150-rubygems-integration_1.18_all.deb ... Unpacking rubygems-integration (1.18) ... Selecting previously unselected package ruby3.0. Preparing to unpack .../151-ruby3.0_3.0.2-7ubuntu2_amd64.deb ... Unpacking ruby3.0 (3.0.2-7ubuntu2) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../152-ruby-rubygems_3.3.15-1_all.deb ... Unpacking ruby-rubygems (3.3.15-1) ... Selecting previously unselected package ruby. Preparing to unpack .../153-ruby_1%3a3.0~exp1_amd64.deb ... Unpacking ruby (1:3.0~exp1) ... Selecting previously unselected package rake. Preparing to unpack .../154-rake_13.0.6-3_all.deb ... Unpacking rake (13.0.6-3) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../155-ruby-net-telnet_0.1.1-2.1_all.deb ... Unpacking ruby-net-telnet (0.1.1-2.1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../156-ruby-webrick_1.7.0-3_all.deb ... Unpacking ruby-webrick (1.7.0-3) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../157-ruby-xmlrpc_0.3.2-2_all.deb ... Unpacking ruby-xmlrpc (0.3.2-2) ... Selecting previously unselected package libruby3.0:amd64. Preparing to unpack .../158-libruby3.0_3.0.2-7ubuntu2_amd64.deb ... Unpacking libruby3.0:amd64 (3.0.2-7ubuntu2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../159-libsm6_2%3a1.2.3-1build2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1build2) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../160-libsynctex2_2022.20220321.62855-4_amd64.deb ... Unpacking libsynctex2:amd64 (2022.20220321.62855-4) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../161-libteckit0_2.5.11+ds1-1_amd64.deb ... Unpacking libteckit0:amd64 (2.5.11+ds1-1) ... Selecting previously unselected package libtexlua53-5:amd64. Preparing to unpack .../162-libtexlua53-5_2022.20220321.62855-4_amd64.deb ... Unpacking libtexlua53-5:amd64 (2022.20220321.62855-4) ... Selecting previously unselected package libtexluajit2:amd64. Preparing to unpack .../163-libtexluajit2_2022.20220321.62855-4_amd64.deb ... Unpacking libtexluajit2:amd64 (2022.20220321.62855-4) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../164-libxml-commons-external-java_1.4.01-5_all.deb ... Unpacking libxml-commons-external-java (1.4.01-5) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../165-libxml-commons-resolver1.1-java_1.2-11_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-11) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../166-libxerces2-java_2.12.2-1_all.deb ... Unpacking libxerces2-java (2.12.2-1) ... Selecting previously unselected package libxalan2-java. Preparing to unpack .../167-libxalan2-java_2.7.2-4_all.deb ... Unpacking libxalan2-java (2.7.2-4) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../168-libxt6_1%3a1.2.1-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.2.1-1) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../169-libxmu6_2%3a1.1.3-3_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.3-3) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../170-libxpm4_1%3a3.5.12-1build2_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1build2) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../171-libxaw7_2%3a1.0.14-1_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.14-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../172-libxft2_2.3.4-1_amd64.deb ... Unpacking libxft2:amd64 (2.3.4-1) ... Selecting previously unselected package libzzip-0-13:amd64. Preparing to unpack .../173-libzzip-0-13_0.13.72+dfsg.1-1.1_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../174-preview-latex-style_12.2-1ubuntu1_all.deb ... Unpacking preview-latex-style (12.2-1ubuntu1) ... Selecting previously unselected package ruby-text. Preparing to unpack .../175-ruby-text_1.3.1-1_all.deb ... Unpacking ruby-text (1.3.1-1) ... Selecting previously unselected package ruby-cassiopee. Preparing to unpack .../176-ruby-cassiopee_0.1.13-1.1_all.deb ... Unpacking ruby-cassiopee (0.1.13-1.1) ... Selecting previously unselected package swi-prolog-core. Preparing to unpack .../177-swi-prolog-core_8.4.2+dfsg-2ubuntu1_amd64.deb ... Unpacking swi-prolog-core (8.4.2+dfsg-2ubuntu1) ... Selecting previously unselected package swi-prolog-doc. Preparing to unpack .../178-swi-prolog-doc_8.4.2+dfsg-2ubuntu1_all.deb ... Unpacking swi-prolog-doc (8.4.2+dfsg-2ubuntu1) ... Selecting previously unselected package swi-prolog-core-packages. Preparing to unpack .../179-swi-prolog-core-packages_8.4.2+dfsg-2ubuntu1_amd64.deb ... Unpacking swi-prolog-core-packages (8.4.2+dfsg-2ubuntu1) ... Selecting previously unselected package swi-prolog-nox. Preparing to unpack .../180-swi-prolog-nox_8.4.2+dfsg-2ubuntu1_amd64.deb ... Unpacking swi-prolog-nox (8.4.2+dfsg-2ubuntu1) ... Selecting previously unselected package swi-prolog-x. Preparing to unpack .../181-swi-prolog-x_8.4.2+dfsg-2ubuntu1_amd64.deb ... Unpacking swi-prolog-x (8.4.2+dfsg-2ubuntu1) ... Selecting previously unselected package swi-prolog. Preparing to unpack .../182-swi-prolog_8.4.2+dfsg-2ubuntu1_amd64.deb ... Unpacking swi-prolog (8.4.2+dfsg-2ubuntu1) ... Selecting previously unselected package t1utils. Preparing to unpack .../183-t1utils_1.41-4build2_amd64.deb ... Unpacking t1utils (1.41-4build2) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../184-texlive-binaries_2022.20220321.62855-4_amd64.deb ... Unpacking texlive-binaries (2022.20220321.62855-4) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../185-xdg-utils_1.1.3-4.1ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-4.1ubuntu2) ... Selecting previously unselected package texlive-base. Preparing to unpack .../186-texlive-base_2022.20220405-2_all.deb ... Unpacking texlive-base (2022.20220405-2) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../187-texlive-fonts-recommended_2022.20220405-2_all.deb ... Unpacking texlive-fonts-recommended (2022.20220405-2) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../188-texlive-latex-base_2022.20220405-2_all.deb ... Unpacking texlive-latex-base (2022.20220405-2) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../189-texlive-latex-recommended_2022.20220405-2_all.deb ... Unpacking texlive-latex-recommended (2022.20220405-2) ... Selecting previously unselected package texlive. Preparing to unpack .../190-texlive_2022.20220405-2_all.deb ... Unpacking texlive (2022.20220405-2) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../191-libfontbox-java_1%3a1.8.16-2_all.deb ... Unpacking libfontbox-java (1:1.8.16-2) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../192-libpdfbox-java_1%3a1.8.16-2_all.deb ... Unpacking libpdfbox-java (1:1.8.16-2) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../193-texlive-pictures_2022.20220405-2_all.deb ... Unpacking texlive-pictures (2022.20220405-2) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../194-texlive-latex-extra_2022.20220405-3_all.deb ... Unpacking texlive-latex-extra (2022.20220405-3) ... Selecting previously unselected package texlive-plain-generic. Preparing to unpack .../195-texlive-plain-generic_2022.20220405-3_all.deb ... Unpacking texlive-plain-generic (2022.20220405-3) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../196-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up media-types (8.0.0) ... Setting up libpipeline1:amd64 (1.5.6-1) ... Setting up libgraphite2-3:amd64 (1.3.14-1build2) ... Setting up liblcms2-2:amd64 (2.12~rc1-2build2) ... Setting up libpixman-1-0:amd64 (0.40.0-1build4) ... Setting up libicu71:amd64 (71.1-3) ... Setting up libxau6:amd64 (1:1.0.9-1build5) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up bsdextrautils (2.38-4ubuntu1) ... Setting up java-common (0.72build2) ... Setting up libcommons-cli-java (1.4-2) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up gawk (1:5.1.0-1build3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1build2) ... Setting up libglib2.0-0:amd64 (2.72.2-2) ... No schema files found: doing nothing. Setting up libglvnd0:amd64 (1.4.0-1) ... Setting up libtexluajit2:amd64 (2022.20220321.62855-4) ... Setting up libdebhelper-perl (13.7.1ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build6) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+23ubuntu2) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7ubuntu1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up liblog4j1.2-java (1.2.17-11) ... Setting up gettext-base (0.21-6) ... Setting up m4 (1.4.18-5ubuntu2) ... Setting up rubygems-integration (1.18) ... Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.41-4) ... Setting up libossp-uuid16:amd64 (1.6.2-1.5build9) ... Setting up libunwind8:amd64 (1.3.2-2build3) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.2.6.1-2) ... Setting up autotools-dev (20220109.1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-3) ... Setting up libx11-data (2:1.7.5-1) ... Setting up libnspr4:amd64 (2:4.34-1) ... Setting up libteckit0:amd64 (2.5.11+ds1-1) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5ubuntu5) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.12.20-2ubuntu4) ... Setting up ruby-net-telnet (0.1.1-2.1) ... Setting up t1utils (1.41-4build2) ... Setting up libtexlua53-5:amd64 (2022.20220321.62855-4) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up swi-prolog-core (8.4.2+dfsg-2ubuntu1) ... update-alternatives: using /usr/bin/swipl to provide /usr/bin/prolog (prolog) in auto mode Setting up libcommons-pool-java (1.6-4) ... Setting up autopoint (0.21-6) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up libpcsclite1:amd64 (1.9.8-1) ... Setting up ucf (3.0043) ... Setting up libsensors5:amd64 (1:3.6.0-7ubuntu1) ... Setting up libjpeg-turbo8:amd64 (2.1.2-0ubuntu1) ... Setting up libjgraph-java (5.12.4.2+dfsg-5.1) ... Setting up libactivation-java (1.2.0-2) ... Setting up libhamcrest-java (1.3-9) ... Setting up libglapi-mesa:amd64 (22.0.5-1ubuntu1) ... Setting up libkpathsea6:amd64 (2022.20220321.62855-4) ... Setting up libvulkan1:amd64 (1.3.216.0-1) ... Setting up autoconf (2.71-2) ... Setting up ruby-webrick (1.7.0-3) ... Setting up libboost-serialization1.74.0:amd64 (1.74.0-14ubuntu4) ... Setting up libgif7:amd64 (5.2.1-2.5) ... Setting up libantlr3-runtime-java (3.5.2-9) ... Setting up libmd0:amd64 (1.0.4-1build1) ... Setting up libxshmfence1:amd64 (1.3-1build4) ... Setting up libmail-java (1.6.5-1) ... Setting up swi-prolog-core-packages (8.4.2+dfsg-2ubuntu1) ... Setting up libuchardet0:amd64 (0.0.7-1build2) ... Setting up libxml-commons-external-java (1.4.01-5) ... Setting up libasound2:amd64 (1.2.6.1-2) ... Setting up libmpdec3:amd64 (2.5.1-2build2) ... Setting up fonts-lmodern (2.005-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu4) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libbsd0:amd64 (0.11.6-1) ... Setting up libdrm-common (2.4.110-1ubuntu1) ... Setting up libelf1:amd64 (0.187-1) ... Setting up ruby-text (1.3.1-1) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1) ... Setting up xdg-utils (1.1.3-4.1ubuntu2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up chrpath (0.16-2) ... Setting up libsynctex2:amd64 (2022.20220321.62855-4) ... Setting up libgflags2.2 (2.2.2-2) ... Setting up libjpeg8:amd64 (8c-2ubuntu10) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libcommons-dbcp-java (1.4-7) ... Setting up libpaper1:amd64 (1.1.28build2) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1build2) ... Setting up libdw1:amd64 (0.187-1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu5) ... Setting up libxcb1:amd64 (1.14-3ubuntu3) ... Setting up gettext (0.21-6) ... Setting up libxcb-xfixes0:amd64 (1.14-3ubuntu3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libgoogle-glog0v6 (0.6.0-1) ... Setting up libstringtemplate4-java (4.0.8-2.1) ... Setting up libjgrapht0.8-java (0.8.3-5) ... Setting up libcassie1v5 (1.0.9-3build2) ... Setting up libtool (2.4.7-4) ... Setting up libarchive13:amd64 (3.6.0-1ubuntu1) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu3) ... Setting up fontconfig-config (2.13.1-4.4ubuntu1) ... Setting up libxcb-glx0:amd64 (1.14-3ubuntu3) ... Setting up libedit2:amd64 (3.1-20210910-1build1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:amd64 (0.8-5ubuntu5) ... Setting up cassiopee (1.0.9-3build2) ... Setting up swi-prolog-doc (8.4.2+dfsg-2ubuntu1) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libnss3:amd64 (2:3.79-1) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu3) ... Setting up libpaper-utils (1.1.28build2) ... Setting up libcommons-lang-java (2.6-10) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:amd64 (1.14-3ubuntu3) ... Setting up libpython3.10-stdlib:amd64 (3.10.5-1) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.17) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libptexenc1:amd64 (2022.20220321.62855-4) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3ubuntu3) ... Setting up libxalan2-java (2.7.2-4) ... Setting up libbiojava1.9-java (1:1.9.5+dfsg-2) ... Setting up libxcb-dri2-0:amd64 (1.14-3ubuntu3) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up libllvm14:amd64 (1:14.0.5-1) ... Setting up libdrm2:amd64 (2.4.110-1ubuntu1) ... Setting up dwz (0.14-1build2) ... Setting up groff-base (1.22.4-8build1) ... Setting up debugedit (1:5.0-4build1) ... Setting up swi-prolog-nox (8.4.2+dfsg-2ubuntu1) ... Setting up libx11-6:amd64 (2:1.7.5-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.4ubuntu1) ... Setting up libcommons-configuration-java (1.10-5) ... Setting up libsm6:amd64 (2:1.2.3-1build2) ... Setting up libavahi-client3:amd64 (0.8-5ubuntu5) ... Setting up libpython3-stdlib:amd64 (3.10.4-0ubuntu2) ... Setting up libdrm-amdgpu1:amd64 (2.4.110-1ubuntu1) ... Setting up libxcb-dri3-0:amd64 (1.14-3ubuntu3) ... Setting up libx11-xcb1:amd64 (2:1.7.5-1) ... Setting up libbiojava-java (1:1.9.5+dfsg-2) ... Setting up libdrm-nouveau2:amd64 (2.4.110-1ubuntu1) ... Setting up python3.10 (3.10.5-1) ... Setting up libxpm4:amd64 (1:3.5.12-1build2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libdrm-radeon1:amd64 (2.4.110-1ubuntu1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libgl1-mesa-dri:amd64 (22.0.5-1ubuntu1) ... Setting up libxext6:amd64 (2:1.3.4-1build1) ... Setting up python3 (3.10.4-0ubuntu2) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:amd64 (1.16.0-5ubuntu2) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1build3) ... Setting up libxfixes3:amd64 (1:6.0.0-1) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up libcups2:amd64 (2.4.2-1ubuntu1) ... Setting up libxft2:amd64 (2.3.4-1) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libglx-mesa0:amd64 (22.0.5-1ubuntu1) ... Setting up libxi6:amd64 (2:1.8-1build1) ... Setting up libglx0:amd64 (1.4.0-1) ... Setting up libxtst6:amd64 (2:1.2.3-1.1) ... Setting up debhelper (13.7.1ubuntu1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up libgl1:amd64 (1.4.0-1) ... Setting up texlive-binaries (2022.20220321.62855-4) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20220405-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up swi-prolog-x (8.4.2+dfsg-2ubuntu1) ... Setting up texlive-plain-generic (2022.20220405-3) ... Setting up texlive-latex-base (2022.20220405-2) ... Setting up texlive-latex-recommended (2022.20220405-2) ... Setting up texlive-pictures (2022.20220405-2) ... Setting up texlive-fonts-recommended (2022.20220405-2) ... Setting up swi-prolog (8.4.2+dfsg-2ubuntu1) ... Setting up texlive (2022.20220405-2) ... Setting up texlive-latex-extra (2022.20220405-3) ... Setting up rake (13.0.6-3) ... Setting up libruby3.0:amd64 (3.0.2-7ubuntu2) ... Setting up default-jre-headless (2:1.11-72build2) ... Setting up openjdk-11-jre-headless:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... Setting up ruby-rubygems (3.3.15-1) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-72build2) ... Setting up default-jdk-headless (2:1.11-72build2) ... Setting up antlr3 (3.5.2-9) ... Setting up ruby3.0 (3.0.2-7ubuntu2) ... Setting up ant (1.10.12-1) ... Setting up openjdk-11-jdk:amd64 (11.0.15+10-0ubuntu0.22.04.1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:GTS_Root_R4.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:SecureTrust_CA.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:ACCVRAIZ1.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:ISRG_Root_X1.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Izenpe.com.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:GTS_Root_R2.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:GTS_Root_R1.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:SecureSign_RootCA11.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Certigna.pem Adding debian:Secure_Global_CA.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Certigna_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:AffirmTrust_Premium.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GTS_Root_R3.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:EC-ACC.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:AffirmTrust_Networking.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:Cybertrust_Global_Root.pem done. Setting up junit4 (4.13.2-1) ... Setting up default-jdk (2:1.11-72build2) ... Setting up ant-optional (1.10.12-1) ... Setting up ruby (1:3.0~exp1) ... Setting up ruby-cassiopee (0.1.13-1.1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.17) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-120-generic #136-Ubuntu SMP Fri Jun 10 13:40:48 UTC 2022 amd64 (x86_64) Toolchain package versions: binutils_2.38.50.20220615-4ubuntu1 dpkg-dev_1.21.8ubuntu1 g++-11_11.3.0-3ubuntu1 gcc-11_11.3.0-3ubuntu1 libc6-dev_2.35-0ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 linux-libc-dev_5.15.0-27.28 Package versions: adduser_3.121ubuntu1 advancecomp_2.1-2.1ubuntu2 ant_1.10.12-1 ant-optional_1.10.12-1 antlr3_3.5.2-9 apt_2.5.0 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2ubuntu1 base-passwd_3.5.52build1 bash_5.1-6ubuntu1 binutils_2.38.50.20220615-4ubuntu1 binutils-common_2.38.50.20220615-4ubuntu1 binutils-x86-64-linux-gnu_2.38.50.20220615-4ubuntu1 bsdextrautils_2.38-4ubuntu1 bsdutils_1:2.38-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016 ca-certificates-java_20190909 cassiopee_1.0.9-3build2 chrpath_0.16-2 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.3.0-3ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3build1 debconf_1.5.79ubuntu1 debhelper_13.7.1ubuntu1 debianutils_5.7-0.2 debugedit_1:5.0-4build1 default-jdk_2:1.11-72build2 default-jdk-headless_2:1.11-72build2 default-jre_2:1.11-72build2 default-jre-headless_2:1.11-72build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu2 dpkg_1.21.8ubuntu1 dpkg-dev_1.21.8ubuntu1 dwz_0.14-1build2 e2fsprogs_1.46.5-2ubuntu2 fakeroot_1.29-1ubuntu1 file_1:5.41-4 findutils_4.8.0-1ubuntu3 fontconfig-config_2.13.1-4.4ubuntu1 fonts-dejavu-core_2.37-2build1 fonts-lmodern_2.005-1 g++_4:11.2.0-1ubuntu1 g++-11_11.3.0-3ubuntu1 gawk_1:5.1.0-1build3 gcc_4:11.2.0-1ubuntu1 gcc-11_11.3.0-3ubuntu1 gcc-11-base_11.3.0-3ubuntu1 gcc-12-base_12.1.0-2ubuntu1 gettext_0.21-6 gettext-base_0.21-6 gpg_2.2.27-3ubuntu2 gpg-agent_2.2.27-3ubuntu2 gpgconf_2.2.27-3ubuntu2 gpgv_2.2.27-3ubuntu2 grep_3.7-1build1 groff-base_1.22.4-8build1 gzip_1.10-4ubuntu4 hostname_3.23ubuntu2 init_1.63 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 java-common_0.72build2 junit4_4.13.2-1 libacl1_2.3.1-1 libactivation-java_1.2.0-2 libantlr3-runtime-java_3.5.2-9 libapache-pom-java_18-1 libapparmor1_3.0.4-2ubuntu3 libapt-pkg6.0_2.5.0 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1ubuntu1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-3ubuntu1 libasound2_1.2.6.1-2 libasound2-data_1.2.6.1-2 libassuan0_2.5.5-3 libatinject-jsr330-api-java_1.0+ds1-5 libatomic1_12.1.0-2ubuntu1 libattr1_1:2.5.1-1build1 libaudit-common_1:3.0.7-1build1 libaudit1_1:3.0.7-1build1 libavahi-client3_0.8-5ubuntu5 libavahi-common-data_0.8-5ubuntu5 libavahi-common3_0.8-5ubuntu5 libbinutils_2.38.50.20220615-4ubuntu1 libbiojava-java_1:1.9.5+dfsg-2 libbiojava1.9-java_1:1.9.5+dfsg-2 libblkid1_2.38-4ubuntu1 libboost-serialization1.74.0_1.74.0-14ubuntu4 libbrotli1_1.0.9-2build6 libbsd0_0.11.6-1 libbz2-1.0_1.0.8-5build1 libc-bin_2.35-0ubuntu3 libc-dev-bin_2.35-0ubuntu3 libc6_2.35-0ubuntu3 libc6-dev_2.35-0ubuntu3 libcairo2_1.16.0-5ubuntu2 libcap-ng0_0.7.9-4 libcap2_1:2.44-1build3 libcassie1v5_1.0.9-3build2 libcc1-0_12.1.0-2ubuntu1 libcom-err2_1.46.5-2ubuntu2 libcommons-cli-java_1.4-2 libcommons-collections3-java_3.2.2-2 libcommons-configuration-java_1.10-5 libcommons-dbcp-java_1.4-7 libcommons-lang-java_2.6-10 libcommons-logging-java_1.2-3 libcommons-parent-java_43-1 libcommons-pool-java_1.6-4 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38.50.20220615-4ubuntu1 libctf0_2.38.50.20220615-4ubuntu1 libcups2_2.4.2-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.9 libdbus-1-3_1.12.20-2ubuntu4 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.7.1ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu4 libdpkg-perl_1.21.8ubuntu1 libdrm-amdgpu1_2.4.110-1ubuntu1 libdrm-common_2.4.110-1ubuntu1 libdrm-nouveau2_2.4.110-1ubuntu1 libdrm-radeon1_2.4.110-1ubuntu1 libdrm2_2.4.110-1ubuntu1 libdw1_0.187-1 libedit2_3.1-20210910-1build1 libelf1_0.187-1 libexpat1_2.4.8-1 libext2fs2_1.46.5-2ubuntu2 libfakeroot_1.29-1ubuntu1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libfontbox-java_1:1.8.16-2 libfontconfig1_2.13.1-4.4ubuntu1 libfreetype6_2.12.1+dfsg-3 libgcc-11-dev_11.3.0-3ubuntu1 libgcc-s1_12.1.0-2ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 libgflags2.2_2.2.2-2 libgif7_5.2.1-2.5 libgl1_1.4.0-1 libgl1-mesa-dri_22.0.5-1ubuntu1 libglapi-mesa_22.0.5-1ubuntu1 libglib2.0-0_2.72.2-2 libglvnd0_1.4.0-1 libglx-mesa0_22.0.5-1ubuntu1 libglx0_1.4.0-1 libgmp10_2:6.2.1+dfsg-3ubuntu1 libgnutls30_3.7.6-2ubuntu1 libgomp1_12.1.0-2ubuntu1 libgoogle-glog0v6_0.6.0-1 libgpg-error0_1.45-2 libgprofng0_2.38.50.20220615-4ubuntu1 libgraphite2-3_1.3.14-1build2 libgssapi-krb5-2_1.19.2-2 libguava-java_29.0-6 libhamcrest-java_1.3-9 libharfbuzz0b_2.7.4-1ubuntu4 libhogweed6_3.7.3-1build2 libice6_2:1.0.10-1build2 libicu71_71.1-3 libidn2-0_2.3.2-2build1 libip4tc2_1.8.7-1ubuntu6 libisl23_0.24-2build1 libitm1_12.1.0-2ubuntu1 libjgraph-java_5.12.4.2+dfsg-5.1 libjgrapht0.8-java_0.8.3-5 libjpeg-turbo8_2.1.2-0ubuntu1 libjpeg8_8c-2ubuntu10 libjson-c5_0.16-1 libjsr305-java_0.1~+svn49-11 libk5crypto3_1.19.2-2 libkeyutils1_1.6.1-3ubuntu1 libkmod2_29-1ubuntu1 libkpathsea6_2022.20220321.62855-4 libkrb5-3_1.19.2-2 libkrb5support0_1.19.2-2 liblcms2-2_2.12~rc1-2build2 libllvm14_1:14.0.5-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblog4j1.2-java_1.2.17-11 liblsan0_12.1.0-2ubuntu1 liblz4-1_1.9.3-2build2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmail-java_1.6.5-1 libmd0_1.0.4-1build1 libmount1_2.38-4ubuntu1 libmpc3_1.2.1-2build1 libmpdec3_2.5.1-2build2 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.7.3-1build2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libnspr4_2:4.34-1 libnss3_2:3.79-1 libossp-uuid16_1.6.2-1.5build9 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13ubuntu1 libpam-modules-bin_1.4.0-13ubuntu1 libpam-runtime_1.4.0-13ubuntu1 libpam0g_1.4.0-13ubuntu1 libpaper-utils_1.1.28build2 libpaper1_1.1.28build2 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libpcsclite1_1.9.8-1 libpdfbox-java_1:1.8.16-2 libperl5.34_5.34.0-3ubuntu1 libpipeline1_1.5.6-1 libpixman-1-0_0.40.0-1build4 libpng16-16_1.6.37-5 libprocps8_2:3.3.17-6ubuntu2 libptexenc1_2022.20220321.62855-4 libpython3-stdlib_3.10.4-0ubuntu2 libpython3.10-minimal_3.10.5-1 libpython3.10-stdlib_3.10.5-1 libquadmath0_12.1.0-2ubuntu1 libreadline8_8.1.2-1.2 libruby3.0_3.0.2-7ubuntu2 libseccomp2_2.5.4-1ubuntu1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsensors-config_1:3.6.0-7ubuntu1 libsensors5_1:3.6.0-7ubuntu1 libsepol2_3.4-2 libsigsegv2_2.13-1ubuntu3 libsm6_2:1.2.3-1build2 libsmartcols1_2.38-4ubuntu1 libsqlite3-0_3.38.5-1 libss2_1.46.5-2ubuntu2 libssl3_3.0.3-5ubuntu3 libstdc++-11-dev_11.3.0-3ubuntu1 libstdc++6_12.1.0-2ubuntu1 libstringtemplate4-java_4.0.8-2.1 libsub-override-perl_0.09-3 libsynctex2_2022.20220321.62855-4 libsystemd0_249.11-0ubuntu4 libtasn1-6_4.18.0-4build1 libteckit0_2.5.11+ds1-1 libtexlua53-5_2022.20220321.62855-4 libtexluajit2_2022.20220321.62855-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2build1 libtirpc-dev_1.3.2-2build1 libtirpc3_1.3.2-2build1 libtool_2.4.7-4 libtsan0_11.3.0-3ubuntu1 libubsan1_12.1.0-2ubuntu1 libuchardet0_0.0.7-1build2 libudev1_249.11-0ubuntu4 libunistring2_1.0-1 libunwind8_1.3.2-2build3 libuuid1_2.38-4ubuntu1 libvulkan1_1.3.216.0-1 libx11-6_2:1.7.5-1 libx11-data_2:1.7.5-1 libx11-xcb1_2:1.7.5-1 libxalan2-java_2.7.2-4 libxau6_1:1.0.9-1build5 libxaw7_2:1.0.14-1 libxcb-dri2-0_1.14-3ubuntu3 libxcb-dri3-0_1.14-3ubuntu3 libxcb-glx0_1.14-3ubuntu3 libxcb-present0_1.14-3ubuntu3 libxcb-render0_1.14-3ubuntu3 libxcb-shm0_1.14-3ubuntu3 libxcb-sync1_1.14-3ubuntu3 libxcb-xfixes0_1.14-3ubuntu3 libxcb1_1.14-3ubuntu3 libxdmcp6_1:1.1.3-0ubuntu5 libxerces2-java_2.12.2-1 libxext6_2:1.3.4-1build1 libxfixes3_1:6.0.0-1 libxft2_2.3.4-1 libxi6_2:1.8-1build1 libxml-commons-external-java_1.4.01-5 libxml-commons-resolver1.1-java_1.2-11 libxml2_2.9.14+dfsg-1 libxmu6_2:1.1.3-3 libxpm4_1:3.5.12-1build2 libxrender1_1:0.9.10-1.1 libxshmfence1_1.3-1build4 libxt6_1:1.2.1-1 libxtst6_2:1.2.3-1.1 libxxf86vm1_1:1.1.4-1build3 libxxhash0_0.8.1-1 libyaml-0-2_0.2.2-1build2 libzstd1_1.5.2+dfsg-1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.15.0-27.28 lockfile-progs_0.1.19build1 login_1:4.11.1+dfsg1-2ubuntu1 logsave_1.46.5-2ubuntu2 lsb-base_11.1.0ubuntu4 lto-disabled-list_27 m4_1.4.18-5ubuntu2 make_4.3-4.1build1 man-db_2.10.2-1 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openjdk-11-jdk_11.0.15+10-0ubuntu0.22.04.1 openjdk-11-jdk-headless_11.0.15+10-0ubuntu0.22.04.1 openjdk-11-jre_11.0.15+10-0ubuntu0.22.04.1 openjdk-11-jre-headless_11.0.15+10-0ubuntu0.22.04.1 openssl_3.0.3-5ubuntu3 optipng_0.7.7-2build1 passwd_1:4.11.1+dfsg1-2ubuntu1 patch_2.7.6-7build2 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.34_5.34.0-3ubuntu1 pinentry-curses_1.2.0-1ubuntu1 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 preview-latex-style_12.2-1ubuntu1 procps_2:3.3.17-6ubuntu2 python3_3.10.4-0ubuntu2 python3-minimal_3.10.4-0ubuntu2 python3.10_3.10.5-1 python3.10-minimal_3.10.5-1 rake_13.0.6-3 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 ruby_1:3.0~exp1 ruby-cassiopee_0.1.13-1.1 ruby-net-telnet_0.1.1-2.1 ruby-rubygems_3.3.15-1 ruby-text_1.3.1-1 ruby-webrick_1.7.0-3 ruby-xmlrpc_0.3.2-2 ruby3.0_3.0.2-7ubuntu2 rubygems-integration_1.18 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 swi-prolog_8.4.2+dfsg-2ubuntu1 swi-prolog-core_8.4.2+dfsg-2ubuntu1 swi-prolog-core-packages_8.4.2+dfsg-2ubuntu1 swi-prolog-doc_8.4.2+dfsg-2ubuntu1 swi-prolog-nox_8.4.2+dfsg-2ubuntu1 swi-prolog-x_8.4.2+dfsg-2ubuntu1 systemd_249.11-0ubuntu4 systemd-sysv_249.11-0ubuntu4 sysvinit-utils_3.01-1ubuntu1 t1utils_1.41-4build2 tar_1.34+dfsg-1build3 tex-common_6.17 texlive_2022.20220405-2 texlive-base_2022.20220405-2 texlive-binaries_2022.20220321.62855-4 texlive-fonts-recommended_2022.20220405-2 texlive-latex-base_2022.20220405-2 texlive-latex-extra_2022.20220405-3 texlive-latex-recommended_2022.20220405-2 texlive-pictures_2022.20220405-2 texlive-plain-generic_2022.20220405-3 tzdata_2022a-0ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_25ubuntu2 util-linux_2.38-4ubuntu1 util-linux-extra_2.38-4ubuntu1 x11-common_1:7.7+23ubuntu2 xdg-utils_1.1.3-4.1ubuntu2 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-2ubuntu9 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: logol Binary: logol, logol-bin Architecture: any all Version: 1.7.9+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: http://logol.genouest.org Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/logol Vcs-Git: https://salsa.debian.org/med-team/logol.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), default-jdk, ant, ruby, gawk, swi-prolog (>= 8.4.2), swi-prolog-abi-binary-68, libbiojava-java (>= 1:1.9.5+dfsg), antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath Package-List: logol deb science optional arch=all logol-bin deb science optional arch=any Checksums-Sha1: c3b17cec02b128813805ce75da66ee60e9ffed86 2486232 logol_1.7.9+dfsg.orig.tar.xz d87ca987f681ebfcbeb9b424d4dd0bff10991061 13312 logol_1.7.9+dfsg-5.debian.tar.xz Checksums-Sha256: 3ed132aa7ecc20a43e08428dc61cd2176ee245f971f28cc75e395ac3aa252242 2486232 logol_1.7.9+dfsg.orig.tar.xz 078fef155762a05eec230c749ff8274548c3872e99cea38ea4a08611b8605663 13312 logol_1.7.9+dfsg-5.debian.tar.xz Files: eecc705af631e46ff8272b9e5207c5bc 2486232 logol_1.7.9+dfsg.orig.tar.xz af186cfe3c0e53fa0e297c0981b29a01 13312 logol_1.7.9+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmJURV0ACgkQYAMWptwn dHZB+g//T7w2tNAwhl9OMLxTr/b+Aq8KykRucSfb6h77cPQjgRtoU4ydPxJ8D60O FZQefSdlE1sn1UnBZ7zF3fE7xUBA2cPT8Kkt+XNHc/jWUxknW/Nvf9uKTQvgQ0Rd Wa1RfEUWtKdqiviWj5cQpEJRsyQ3deh81kQ5toXPrxaS9eK7MApROBWJsdQFsKfe wQynxilrx/HQ22ZTDKNpxNvLkPnpkiuBQU3tzbl77m8ZI4C/EGHHjFs4EhuclTid vDKT4BnZC3AtXKxBLg0QmfkoOux6zYLLRMH5+r/TlFyZiP9/Hc7wFjNgbfSP+xbW ZTwmWw+o/ipRTnqfKDsZnEXftQdrALUqNOUKH+yzZvWvId07PuujSl5860Qfz1lk vRAv8/CUbAPMdGC8+MVZCutp7sm2meD5Md8SRJ7Qy6LgAB/EWFiJNOvsNi2Bjzmt MPq+/oBKEzUYkdPXIzSEQuqKsgn6tBJOS+L/sjaSaUryUZ36ejzuVk2E1gaFXtFj KNtbEraqJ8K739s9bzw+bX9vvmWFiS8U35VpRYXs1Lp+GfEyFSavocGFDM33BAKj ziNzBsFBa4l/0FM3Qbpjgr067fldY7O3DZo6RIrxIYDLU/AipK2xEVoyj/9i3Jz4 uazwZV3b2c9UkNnsGrgNpcsWccO45lxhwUvXVuky1aJDoSHhJ18= =IZgS -----END PGP SIGNATURE----- gpgv: Signature made Mon Apr 11 15:12:29 2022 UTC gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./logol_1.7.9+dfsg-5.dsc dpkg-source: info: extracting logol in /<> dpkg-source: info: unpacking logol_1.7.9+dfsg.orig.tar.xz dpkg-source: info: unpacking logol_1.7.9+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_drmaa_support dpkg-source: info: applying fixLibPath dpkg-source: info: applying setDebianDirs dpkg-source: info: applying fix_doc_generation dpkg-source: info: applying remove_rubygems_usage dpkg-source: info: applying fix_antlr35 dpkg-source: info: applying fix_swipl_declarations dpkg-source: info: applying fix_swipl_foreign_load dpkg-source: info: applying remove_test dpkg-source: info: applying fix_biojava_paths_in_scripts.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24034000 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24034000 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24034000 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package logol dpkg-buildpackage: info: source version 1.7.9+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi if [ -e prolog/process.so ]; then rm -f prolog/process.so; fi dh_auto_clean ant clean Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. clean: BUILD SUCCESSFUL Total time: 0 seconds make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' if [ -e tools/pldoc.sty.upstream ]; then mv tools/pldoc.sty.upstream tools/pldoc.sty; fi if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi dh_clean rm -f Swi*.xml rm -f prolog/*.exe rm -f lib/*.jar rm -f *.log rm -f src/org/irisa/genouest/logol/parser/* rm -f tools/suffixSearch.sh rm -rf test/tmp rm -rf test/results make[1]: Leaving directory '/<>' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/<>' if [ ! -e lib ]; then mkdir -p lib; fi if [ ! -e prolog/process.so ]; then ln -s /usr/lib/swi-prolog/lib/x86_64-linux/process.so prolog/process.so; fi mv tools/pldoc.sty tools/pldoc.sty.upstream dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 ant -Duser.name debian -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. updatemod: setup: compile_swi_exe: [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="x86_64-linux" [exec] PLSOEXT="so" [exec] PLLIBDIR="/usr/lib/swi-prolog/lib/x86_64-linux" [exec] PLLIB="-lswipl" [exec] PLTHREADS="yes" [exec] logolSwiMain.c: In function ‘main’: [exec] logolSwiMain.c:50:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 50 | PL_put_string_chars(ResultFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:52:18: warning: ignoring return value of ‘PL_next_solution’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 52 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:58:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 58 | PL_put_string_chars(File,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:62:18: warning: ignoring return value of ‘PL_put_integer’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 62 | PL_put_integer(HeaderSize, header); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:67:18: warning: ignoring return value of ‘PL_next_solution’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 67 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:76:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 76 | PL_put_string_chars(LogolFile,argv[6]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:78:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 78 | PL_put_string_chars(InFile,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:80:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 80 | PL_put_string_chars(OutFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:82:18: warning: ignoring return value of ‘PL_put_integer’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 82 | PL_put_integer(Offset,offset); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:102:18: warning: ignoring return value of ‘PL_next_solution’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 102 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:120:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 120 | PL_put_string_chars(ResultFile,argv[2]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:122:18: warning: ignoring return value of ‘PL_next_solution’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 122 | PL_next_solution(query); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /<>/prolog/sicstus.pl:495: [exec] Warning: Singleton variables: [Before,Length,CountPos,CountLength] [exec] ERROR: /<>/prolog/logol.pl:7: [exec] ERROR: catch/3: Unknown procedure: module/3 [exec] ERROR: However, there are definitions for: [exec] ERROR: module/1 [exec] Warning: /<>/prolog/logol.pl:7: [exec] Warning: Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] Warning: /<>/prolog/logol.pl:206: [exec] Warning: Singleton variables: [Max] [exec] Warning: /<>/prolog/logol.pl:221: [exec] Warning: Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Warning: Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:394: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:408: [exec] Warning: Singleton variables: [Unique,Out,Exit] [exec] Warning: /<>/prolog/logol.pl:434: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Warning: Singleton variables: [NewPos] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Warning: Singleton variable in branch: NewPos [exec] Warning: /<>/prolog/logol.pl:514: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:517: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:556: [exec] Warning: Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:575: [exec] Warning: Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Warning: Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: IntermediateSpacer [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:673: [exec] Warning: Singleton variables: [InputLength] [exec] Warning: /<>/prolog/logol.pl:679: [exec] Warning: Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /<>/prolog/logol.pl:724: [exec] Warning: Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /<>/prolog/logol.pl:964: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:993: [exec] Warning: Singleton variables: [Word] [exec] Warning: /<>/prolog/logol.pl:1024: [exec] Warning: Singleton variables: [N,Min,Max,Z] [exec] Warning: /<>/prolog/logol.pl:1068: [exec] Warning: Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:1162: [exec] Warning: Singleton variables: [Errors] [exec] Warning: /<>/prolog/logol.pl:1266: [exec] Warning: Singleton variables: [Morph,Reverse] [exec] Warning: /<>/prolog/logol.pl:1270: [exec] Warning: Singleton variables: [Morph] [exec] Warning: /<>/prolog/logol.pl:1281: [exec] Warning: Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /<>/prolog/logol.pl:1317: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1341: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1645: [exec] Warning: Singleton variables: [Name] [exec] Warning: /<>/prolog/logol.pl:2036: [exec] Warning: Singleton variables: [Matrix] [exec] Warning: /<>/prolog/logol.pl:2077: [exec] Warning: Singleton variables: [Type] [exec] Warning: /<>/prolog/logol.pl:2180: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:2335: [exec] Warning: Singleton variables: [FilterPredicate] [exec] Warning: /<>/prolog/logol.pl:2350: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /<>/prolog/logol.pl:2380: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2395: [exec] Warning: Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Warning: Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Warning: Singleton variable in branch: Max [exec] Warning: Singleton variable in branch: Z [exec] Warning: /<>/prolog/logol.pl:2470: [exec] Warning: Singleton variables: [VarId] [exec] Warning: /<>/prolog/logol.pl:2498: [exec] Warning: Singleton variables: [X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2516: [exec] Warning: Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2534: [exec] Warning: Singleton variables: [ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2576: [exec] Warning: Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /<>/prolog/logol.pl:2604: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2608: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2624: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2644: [exec] Warning: Singleton variables: [ID] [exec] Warning: /<>/prolog/logol.pl:2647: [exec] Warning: Singleton variables: [OPTVAR] [exec] Warning: /<>/prolog/logol.pl:2653: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2701: [exec] Warning: Singleton variables: [DATA] [exec] Warning: /<>/prolog/logol.pl:2752: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2755: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2758: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2761: [exec] Warning: Singleton variables: [MATCH,ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2766: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] Warning: /<>/prolog/logol.pl:2769: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] % Disabled autoloading (loaded 41 files) [exec] % Disabled autoloading (loaded 3 files) [exec] % Disabled autoloading (loaded 0 files) [exec] eval `swipl --dump-runtime-variables` [exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o logolSwiMain.o logolSwiMain.c [exec] /usr/bin/cc -o logol.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/x86_64-linux logolSwiMain.o -L/usr/lib/swi-prolog/lib/x86_64-linux -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-7731',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-7731 >> logol.exe [exec] chmod 755 logol.exe [exec] rm logolSwiMain.o [exec] rm pltmp-7731 [exec] % halt [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="x86_64-linux" [exec] PLSOEXT="so" [exec] PLLIBDIR="/usr/lib/swi-prolog/lib/x86_64-linux" [exec] PLLIB="-lswipl" [exec] PLTHREADS="yes" [exec] preSwiMain.c: In function ‘main’: [exec] preSwiMain.c:40:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 40 | PL_put_string_chars(LogolFile1,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:42:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 42 | PL_put_string_chars(LogolFile2,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:44:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 44 | PL_put_string_chars(LogolFile3,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:46:18: warning: ignoring return value of ‘PL_put_string_chars’ declared with attribute ‘warn_unused_result’ [-Wunused-result] [exec] 46 | PL_put_string_chars(LogolFile4,argv[1]); [exec] | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /<>/prolog/sicstus.pl:495: [exec] Warning: Singleton variables: [Before,Length,CountPos,CountLength] [exec] ERROR: /<>/prolog/logol.pl:7: [exec] ERROR: catch/3: Unknown procedure: module/3 [exec] ERROR: However, there are definitions for: [exec] ERROR: module/1 [exec] Warning: /<>/prolog/logol.pl:7: [exec] Warning: Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] Warning: /<>/prolog/logol.pl:206: [exec] Warning: Singleton variables: [Max] [exec] Warning: /<>/prolog/logol.pl:221: [exec] Warning: Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Warning: Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:304: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:394: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:408: [exec] Warning: Singleton variables: [Unique,Out,Exit] [exec] Warning: /<>/prolog/logol.pl:434: [exec] Warning: Singleton variables: [SequenceLength] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Warning: Singleton variables: [NewPos] [exec] Warning: /<>/prolog/logol.pl:472: [exec] Warning: Singleton variable in branch: NewPos [exec] Warning: /<>/prolog/logol.pl:514: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:517: [exec] Warning: Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /<>/prolog/logol.pl:556: [exec] Warning: Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:575: [exec] Warning: Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Warning: Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /<>/prolog/logol.pl:590: [exec] Warning: Singleton variable in branch: Tmp1 [exec] Warning: Singleton variable in branch: Tmp2 [exec] Warning: Singleton variable in branch: IntermediateSpacer [exec] Warning: Singleton variable in branch: TmpOutput [exec] Warning: Singleton variable in branch: Continue [exec] Warning: /<>/prolog/logol.pl:673: [exec] Warning: Singleton variables: [InputLength] [exec] Warning: /<>/prolog/logol.pl:679: [exec] Warning: Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /<>/prolog/logol.pl:724: [exec] Warning: Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /<>/prolog/logol.pl:964: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:993: [exec] Warning: Singleton variables: [Word] [exec] Warning: /<>/prolog/logol.pl:1024: [exec] Warning: Singleton variables: [N,Min,Max,Z] [exec] Warning: /<>/prolog/logol.pl:1068: [exec] Warning: Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /<>/prolog/logol.pl:1162: [exec] Warning: Singleton variables: [Errors] [exec] Warning: /<>/prolog/logol.pl:1266: [exec] Warning: Singleton variables: [Morph,Reverse] [exec] Warning: /<>/prolog/logol.pl:1270: [exec] Warning: Singleton variables: [Morph] [exec] Warning: /<>/prolog/logol.pl:1281: [exec] Warning: Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /<>/prolog/logol.pl:1317: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1341: [exec] Warning: Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /<>/prolog/logol.pl:1645: [exec] Warning: Singleton variables: [Name] [exec] Warning: /<>/prolog/logol.pl:2036: [exec] Warning: Singleton variables: [Matrix] [exec] Warning: /<>/prolog/logol.pl:2077: [exec] Warning: Singleton variables: [Type] [exec] Warning: /<>/prolog/logol.pl:2180: [exec] Warning: Singleton variables: [Exit] [exec] Warning: /<>/prolog/logol.pl:2335: [exec] Warning: Singleton variables: [FilterPredicate] [exec] Warning: /<>/prolog/logol.pl:2350: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /<>/prolog/logol.pl:2380: [exec] Warning: Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2395: [exec] Warning: Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Warning: Singleton variables: [Z] [exec] Warning: /<>/prolog/logol.pl:2435: [exec] Warning: Singleton variable in branch: Max [exec] Warning: Singleton variable in branch: Z [exec] Warning: /<>/prolog/logol.pl:2470: [exec] Warning: Singleton variables: [VarId] [exec] Warning: /<>/prolog/logol.pl:2498: [exec] Warning: Singleton variables: [X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2516: [exec] Warning: Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /<>/prolog/logol.pl:2534: [exec] Warning: Singleton variables: [ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2576: [exec] Warning: Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /<>/prolog/logol.pl:2604: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2608: [exec] Warning: Singleton variables: [OPTVAR,ID] [exec] Warning: /<>/prolog/logol.pl:2624: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2644: [exec] Warning: Singleton variables: [ID] [exec] Warning: /<>/prolog/logol.pl:2647: [exec] Warning: Singleton variables: [OPTVAR] [exec] Warning: /<>/prolog/logol.pl:2653: [exec] Warning: Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /<>/prolog/logol.pl:2701: [exec] Warning: Singleton variables: [DATA] [exec] Warning: /<>/prolog/logol.pl:2752: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2755: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2758: [exec] Warning: Singleton variables: [MATCH] [exec] Warning: /<>/prolog/logol.pl:2761: [exec] Warning: Singleton variables: [MATCH,ALPHABET] [exec] Warning: /<>/prolog/logol.pl:2766: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] Warning: /<>/prolog/logol.pl:2769: [exec] Warning: Singleton variables: [VAR,VARFOUND] [exec] % Disabled autoloading (loaded 41 files) [exec] % Disabled autoloading (loaded 3 files) [exec] % Disabled autoloading (loaded 0 files) [exec] eval `swipl --dump-runtime-variables` [exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o preSwiMain.o preSwiMain.c [exec] /usr/bin/cc -o preanalyse.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/x86_64-linux preSwiMain.o -L/usr/lib/swi-prolog/lib/x86_64-linux -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-7749',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-7749 >> preanalyse.exe [exec] chmod 755 preanalyse.exe [exec] rm preSwiMain.o [exec] rm pltmp-7749 [exec] % halt clean: antlr: [java] /<>/src/logol.g [java] ANTLR Parser Generator Version 3.5.2 compile: [mkdir] Created dir: /<>/bin [javac] /<>/build.xml:91: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 62 source files to /<>/bin [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] /<>/src/org/irisa/genouest/logol/test/GrammarTest.java:1995: warning: unreachable catch clause [javac] } catch (IOException e) { [javac] ^ [javac] thrown type FileNotFoundException has already been caught [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 2 warnings create-jar: [jar] Building jar: /<>/lib/LogolExec.jar test_swi: [mkdir] Created dir: /<>/test/tmp [mkdir] Created dir: /<>/test/results [exec] [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:1: [exec] Warning: Singleton variables: [UnitPath,Lib] [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:1: [exec] Warning: Goal (directive) failed: user:(prolog_flag(argv,[_7014,_7036,_7058,_7080,_7102,_7124,_7146,_7168,_7190,_7212]),ensure_loaded(_7124)) [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:5: [exec] Warning: Singleton variables: [SicPath,Lib] [exec] Warning: /<>/prolog/unitTest/swi-unit.pl:5: [exec] Warning: Goal (directive) failed: user:(prolog_flag(argv,[_8850,_8872,_8894,_8916,_8938,_8960,_8982,_9004,_9026,_9048]),ensure_loaded(_8938)) [exec] Welcome to SWI-Prolog (threaded, 64 bits, version 8.4.2) [exec] SWI-Prolog comes with ABSOLUTELY NO WARRANTY. This is free software. [exec] Please run ?- license. for legal details. [exec] [exec] For online help and background, visit https://www.swi-prolog.org [exec] For built-in help, use ?- help(Topic). or ?- apropos(Word). [exec] [exec] % halt [junit] Running org.irisa.genouest.logol.test.GrammarTest [junit] Testsuite: org.irisa.genouest.logol.test.GrammarTest [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 12.05 sec [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 12.05 sec [junit] [junit] ------------- Standard Output --------------- [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.logol.e8418144-f740-4604-820d-507d4fbf9d72.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.logol.e8418144-f740-4604-820d-507d4fbf9d72.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.logol.e8418144-f740-4604-820d-507d4fbf9d72.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_overlap.logol.88ad1bc7-010b-42ca-a3ac-efd412c7696c.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_overlap.logol.88ad1bc7-010b-42ca-a3ac-efd412c7696c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_overlap.logol.88ad1bc7-010b-42ca-a3ac-efd412c7696c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/partialcomplement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.Logol - option offset called with 1000 [junit] INFO org.irisa.genouest.logol.Logol - option start called with 5 [junit] INFO org.irisa.genouest.logol.Logol - option end called with 35 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.e6031059-c2f6-4521-adfe-5b142c452f6b.1005-1035.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.e6031059-c2f6-4521-adfe-5b142c452f6b.reverse.1005-1035.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/partialcomplement.logol.e6031059-c2f6-4521-adfe-5b142c452f6b.5-35-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/partialcomplement.logol.e6031059-c2f6-4521-adfe-5b142c452f6b.5-35-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/alphabet.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/alphabet.logol.4ad35230-21ee-4530-a425-b7e6cf84a676.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/alphabet.logol.4ad35230-21ee-4530-a425-b7e6cf84a676.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/alphabet.logol.4ad35230-21ee-4530-a425-b7e6cf84a676.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/optimal.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.logol.c67d28b4-24b0-40e7-bcb3-b82c8e06fbfa.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.logol.c67d28b4-24b0-40e7-bcb3-b82c8e06fbfa.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.logol.c67d28b4-24b0-40e7-bcb3-b82c8e06fbfa.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_startspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_startspacer.logol.9991585f-00f6-49c4-ad3f-4656c237735f.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_startspacer.logol.9991585f-00f6-49c4-ad3f-4656c237735f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_startspacer.logol.9991585f-00f6-49c4-ad3f-4656c237735f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/overlap.logol.943d9e35-f50e-4d6b-9945-1e597474e683.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/overlap.logol.943d9e35-f50e-4d6b-9945-1e597474e683.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/overlap.logol.943d9e35-f50e-4d6b-9945-1e597474e683.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/end.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end.logol.fe650e9f-8237-4c85-84b8-c3c1ff19f7b9.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end.logol.fe650e9f-8237-4c85-84b8-c3c1ff19f7b9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end.logol.fe650e9f-8237-4c85-84b8-c3c1ff19f7b9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.logol.3b9c2510-1724-44c0-91c8-004636dfd9aa.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.logol.3b9c2510-1724-44c0-91c8-004636dfd9aa.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.logol.3b9c2510-1724-44c0-91c8-004636dfd9aa.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.logol.c04c97db-7b15-4cf2-bbe2-0fd9af51d4df.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.logol.c04c97db-7b15-4cf2-bbe2-0fd9af51d4df.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.logol.c04c97db-7b15-4cf2-bbe2-0fd9af51d4df.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1799.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/1799.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1799.logol.02b00565-c4bc-443d-8008-9f234571539d.1-4.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1799.logol.02b00565-c4bc-443d-8008-9f234571539d.0-4-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1799.logol.02b00565-c4bc-443d-8008-9f234571539d.0-4-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1800.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/1800.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1800.logol.664e852a-9b0e-4c40-9fae-5aef59f75737.1-19.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1800.logol.664e852a-9b0e-4c40-9fae-5aef59f75737.0-19-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1800.logol.664e852a-9b0e-4c40-9fae-5aef59f75737.0-19-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/1806.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1806.logol.ab1012ed-cedb-4449-9312-e61a85873ede.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1806.logol.ab1012ed-cedb-4449-9312-e61a85873ede.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1806.logol.ab1012ed-cedb-4449-9312-e61a85873ede.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2244.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2244.logol.c96fb447-4ee1-4ae7-92c3-43db39114954.1-31.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2244.logol.c96fb447-4ee1-4ae7-92c3-43db39114954.0-31-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2244.logol.c96fb447-4ee1-4ae7-92c3-43db39114954.0-31-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2235.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2235.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2235.logol.22fc08da-9681-4817-acb6-5fea9456eda0.1-26.xml: 6 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 6 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2235.logol.22fc08da-9681-4817-acb6-5fea9456eda0.0-26-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2235.logol.22fc08da-9681-4817-acb6-5fea9456eda0.0-26-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2242.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2242.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2242.logol.7b7f3aaa-e462-417f-b889-cc2db575c888.1-29.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2242.logol.7b7f3aaa-e462-417f-b889-cc2db575c888.0-29-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2242.logol.7b7f3aaa-e462-417f-b889-cc2db575c888.0-29-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/2243.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/2243.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2243.logol.b79d04b2-da03-4478-b14d-1fc3e8cf9026.1-15.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2243.logol.b79d04b2-da03-4478-b14d-1fc3e8cf9026.0-15-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2243.logol.b79d04b2-da03-4478-b14d-1fc3e8cf9026.0-15-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/fix2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/fix2244.logol.05b29c2e-bb1a-4064-a0f0-f77ab35e2540.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/fix2244.logol.05b29c2e-bb1a-4064-a0f0-f77ab35e2540.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/fix2244.logol.05b29c2e-bb1a-4064-a0f0-f77ab35e2540.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/halt.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/halt.logol.a26a072c-57ff-403a-a4f6-45a028866180.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/halt.logol.a26a072c-57ff-403a-a4f6-45a028866180.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/halt.logol.a26a072c-57ff-403a-a4f6-45a028866180.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent2.logol.3edd711a-f8c9-4487-a79f-adc6f9a36088.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent2.logol.3edd711a-f8c9-4487-a79f-adc6f9a36088.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent2.logol.3edd711a-f8c9-4487-a79f-adc6f9a36088.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/negcontent3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent3.logol.f07ee60b-a6ec-4156-b1a0-c270ad6a15b0.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent3.logol.f07ee60b-a6ec-4156-b1a0-c270ad6a15b0.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent3.logol.f07ee60b-a6ec-4156-b1a0-c270ad6a15b0.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/external.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external.logol.330b9f9c-7ac6-4f07-973d-dc0da082a722.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external.logol.330b9f9c-7ac6-4f07-973d-dc0da082a722.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external.logol.330b9f9c-7ac6-4f07-973d-dc0da082a722.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/end_of_stream1.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream1.logol.9d43acab-3e02-46c5-99b6-fae8b0fb90f8.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream1.logol.9d43acab-3e02-46c5-99b6-fae8b0fb90f8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream1.logol.9d43acab-3e02-46c5-99b6-fae8b0fb90f8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/end_of_stream2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream2.logol.b407905a-f4a0-4d3b-8e15-dd2cc22c5498.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream2.logol.b407905a-f4a0-4d3b-8e15-dd2cc22c5498.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream2.logol.b407905a-f4a0-4d3b-8e15-dd2cc22c5498.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/metacontrol.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/metacontrol.logol.0e210d40-17ca-4d7a-b44d-cfcd87b1c513.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/metacontrol.logol.0e210d40-17ca-4d7a-b44d-cfcd87b1c513.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/metacontrol.logol.0e210d40-17ca-4d7a-b44d-cfcd87b1c513.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/view_begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/view_begin.logol.0906533f-3ec9-4b43-a76d-a19946c5a58d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/view_begin.logol.0906533f-3ec9-4b43-a76d-a19946c5a58d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/view_begin.logol.0906533f-3ec9-4b43-a76d-a19946c5a58d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/begin_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin_postpone.logol.4da578ca-6398-4255-9273-78366f4c8185.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin_postpone.logol.4da578ca-6398-4255-9273-78366f4c8185.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin_postpone.logol.4da578ca-6398-4255-9273-78366f4c8185.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/complement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.d07ae873-c7b4-46cd-987e-9ef7bb09a8ac.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.d07ae873-c7b4-46cd-987e-9ef7bb09a8ac.reverse.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complement.logol.d07ae873-c7b4-46cd-987e-9ef7bb09a8ac.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complement.logol.d07ae873-c7b4-46cd-987e-9ef7bb09a8ac.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/protein.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/protein.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option protein called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/protein.logol.1a4efa6c-ec74-4faf-832b-c551bdc668f8.1-23.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/protein.logol.1a4efa6c-ec74-4faf-832b-c551bdc668f8.0-23-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/protein.logol.1a4efa6c-ec74-4faf-832b-c551bdc668f8.0-23-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/morphism_var.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism_var.logol.4e3bee70-c725-42ef-be21-286e8a061dca.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism_var.logol.4e3bee70-c725-42ef-be21-286e8a061dca.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism_var.logol.4e3bee70-c725-42ef-be21-286e8a061dca.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.06ef3991-5855-4edb-b7ae-ebf66e32a59d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.06ef3991-5855-4edb-b7ae-ebf66e32a59d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.06ef3991-5855-4edb-b7ae-ebf66e32a59d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/cost_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/cost_postpone.logol.a718e29f-186d-414e-a94d-2b7d7c425b65.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/cost_postpone.logol.a718e29f-186d-414e-a94d-2b7d7c425b65.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/cost_postpone.logol.a718e29f-186d-414e-a94d-2b7d7c425b65.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model.logol.f73a4754-b638-41d5-8097-1ee6d90f0c4a.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model.logol.f73a4754-b638-41d5-8097-1ee6d90f0c4a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model.logol.f73a4754-b638-41d5-8097-1ee6d90f0c4a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewithdistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance.logol.4cb70b0f-c8fd-4a5c-8187-af9d28851ef7.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance.logol.4cb70b0f-c8fd-4a5c-8187-af9d28851ef7.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance.logol.4cb70b0f-c8fd-4a5c-8187-af9d28851ef7.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/optimal.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR1)==>LOGOLVAR2%mydata%:{?"aaaa"},LOGOLVAR3%X1%:{#OPT[2,8]} [junit] mod1(LOGOLVAR4)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/optimal.lgd.cc529e28-c653-4749-adcd-fd9fab69ec88.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.lgd.cc529e28-c653-4749-adcd-fd9fab69ec88.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.lgd.cc529e28-c653-4749-adcd-fd9fab69ec88.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.lgd.cc529e28-c653-4749-adcd-fd9fab69ec88.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewitherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherror.logol.19f8deae-0800-4999-a523-cdccf207f58a.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherror.logol.19f8deae-0800-4999-a523-cdccf207f58a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherror.logol.19f8deae-0800-4999-a523-cdccf207f58a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/anyspacer.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR4)==>LOGOLVAR5%X1%:{@[0,20]},"ccc" [junit] mod1(LOGOLVAR6)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/anyspacer.lgd.45d6f284-3c7c-41ab-a555-309c02b9a3ae.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.lgd.45d6f284-3c7c-41ab-a555-309c02b9a3ae.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.lgd.45d6f284-3c7c-41ab-a555-309c02b9a3ae.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.lgd.45d6f284-3c7c-41ab-a555-309c02b9a3ae.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/all.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR6)==>"ccc",.*,"ccc" [junit] mod1(LOGOLVAR7)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/all.lgd.6f909833-3939-4eb0-8719-83fa7f9a0407.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.lgd.6f909833-3939-4eb0-8719-83fa7f9a0407.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.lgd.6f909833-3939-4eb0-8719-83fa7f9a0407.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.lgd.6f909833-3939-4eb0-8719-83fa7f9a0407.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_any.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_any.logol.eeffec83-adc8-4b56-8435-488abe931dd5.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_any.logol.eeffec83-adc8-4b56-8435-488abe931dd5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_any.logol.eeffec83-adc8-4b56-8435-488abe931dd5.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/comment2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment2.logol.91230541-484f-4b30-952d-7a081b87cf59.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment2.logol.91230541-484f-4b30-952d-7a081b87cf59.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment2.logol.91230541-484f-4b30-952d-7a081b87cf59.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/negcontent.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR7)==>"aaaa",! "cgta":{#[3,5]} [junit] mod1(LOGOLVAR8)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/negcontent.lgd.f22b67ce-df13-400b-a988-cc5822f57973.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.lgd.f22b67ce-df13-400b-a988-cc5822f57973.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.lgd.f22b67ce-df13-400b-a988-cc5822f57973.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.lgd.f22b67ce-df13-400b-a988-cc5822f57973.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror.logol.33191df6-6a65-4e8a-99cf-faebe6e13adf.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror.logol.33191df6-6a65-4e8a-99cf-faebe6e13adf.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror.logol.33191df6-6a65-4e8a-99cf-faebe6e13adf.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_exact.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_exact.logol.edf21ab2-88d1-4938-a040-b45dc8e3fe64.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_exact.logol.edf21ab2-88d1-4938-a040-b45dc8e3fe64.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_exact.logol.edf21ab2-88d1-4938-a040-b45dc8e3fe64.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/all.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.logol.521a7190-11f1-486e-8fde-fa27de48c5f5.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.logol.521a7190-11f1-486e-8fde-fa27de48c5f5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.logol.521a7190-11f1-486e-8fde-fa27de48c5f5.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_unknown.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_unknown.logol.7b8b84d5-bdfd-4593-a3ee-9faecc88db54.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_unknown.logol.7b8b84d5-bdfd-4593-a3ee-9faecc88db54.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_unknown.logol.7b8b84d5-bdfd-4593-a3ee-9faecc88db54.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/morphism.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.logol.90105ff0-4f93-45f7-93a9-701e075edf36.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.logol.90105ff0-4f93-45f7-93a9-701e075edf36.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.logol.90105ff0-4f93-45f7-93a9-701e075edf36.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/or_condition2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition2.logol.a8ace0dd-dd25-4b2d-9799-cee1234db275.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition2.logol.a8ace0dd-dd25-4b2d-9799-cee1234db275.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition2.logol.a8ace0dd-dd25-4b2d-9799-cee1234db275.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/comment.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment.logol.667aea84-e8c0-4c73-91f2-3f32e3dd480c.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment.logol.667aea84-e8c0-4c73-91f2-3f32e3dd480c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment.logol.667aea84-e8c0-4c73-91f2-3f32e3dd480c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/variable.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR8)==>"aaa","acgt":{_LOGOLVAR9%R1%},?LOGOLVAR9%R1% [junit] mod1(LOGOLVAR10)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/variable.lgd.43683584-2d83-4597-b73d-f079d2079f6f.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.lgd.43683584-2d83-4597-b73d-f079d2079f6f.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.lgd.43683584-2d83-4597-b73d-f079d2079f6f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.lgd.43683584-2d83-4597-b73d-f079d2079f6f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model2.logol.d9bcdc16-71ef-433a-9851-7be7916ba304.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model2.logol.d9bcdc16-71ef-433a-9851-7be7916ba304.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model2.logol.d9bcdc16-71ef-433a-9851-7be7916ba304.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model3.logol.fe143494-892a-4bc2-88a6-032312090221.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model3.logol.fe143494-892a-4bc2-88a6-032312090221.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model3.logol.fe143494-892a-4bc2-88a6-032312090221.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/call_model4.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model4.logol.ae13dc25-4d82-4467-97a3-34e1e5ee39d1.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model4.logol.ae13dc25-4d82-4467-97a3-34e1e5ee39d1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model4.logol.ae13dc25-4d82-4467-97a3-34e1e5ee39d1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat0.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat0.logol.af61dd6f-2994-4b2f-83a6-eb20ed51d690.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat0.logol.af61dd6f-2994-4b2f-83a6-eb20ed51d690.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat0.logol.af61dd6f-2994-4b2f-83a6-eb20ed51d690.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/reverse.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/reverse.logol.2ea4edfd-03ee-4135-af14-69ae723b2015.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/reverse.logol.2ea4edfd-03ee-4135-af14-69ae723b2015.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/reverse.logol.2ea4edfd-03ee-4135-af14-69ae723b2015.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_postcontent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent_witherror.logol.27ee8662-c2c1-480b-94e9-e3d1f687911a.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent_witherror.logol.27ee8662-c2c1-480b-94e9-e3d1f687911a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent_witherror.logol.27ee8662-c2c1-480b-94e9-e3d1f687911a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewitherroranddistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherroranddistance.logol.b1328138-34d2-4125-bab1-0abe4f36598d.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherroranddistance.logol.b1328138-34d2-4125-bab1-0abe4f36598d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherroranddistance.logol.b1328138-34d2-4125-bab1-0abe4f36598d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/complex.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complex.logol.77bdfe6a-1e59-45d6-a4e3-9ffb0fd17b39.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complex.logol.77bdfe6a-1e59-45d6-a4e3-9ffb0fd17b39.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complex.logol.77bdfe6a-1e59-45d6-a4e3-9ffb0fd17b39.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variablewithdistance2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance2.logol.76a65951-d931-4862-afd0-76bc5d9c0529.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance2.logol.76a65951-d931-4862-afd0-76bc5d9c0529.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance2.logol.76a65951-d931-4862-afd0-76bc5d9c0529.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable_postcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent.logol.50211914-869c-4a34-be61-e2b47525893d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent.logol.50211914-869c-4a34-be61-e2b47525893d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent.logol.50211914-869c-4a34-be61-e2b47525893d.0-41-all.xml [junit] cgttttgggg [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/multiple_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/multiple_model.logol.534a6465-147d-48ba-b219-4d5f623bf2d3.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/multiple_model.logol.534a6465-147d-48ba-b219-4d5f623bf2d3.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/multiple_model.logol.534a6465-147d-48ba-b219-4d5f623bf2d3.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.1deeebbd-9295-4b23-bb19-0523400533d4.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.1deeebbd-9295-4b23-bb19-0523400533d4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.1deeebbd-9295-4b23-bb19-0523400533d4.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.1deeebbd-9295-4b23-bb19-0523400533d4.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/begin.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR10)==>"aaaa",.*,LOGOLVAR11%X1%:{@[10,12],#[2,8]} [junit] mod1(LOGOLVAR12)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/begin.lgd.74ec8550-ded7-4b2c-ab03-719e566d7765.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.lgd.74ec8550-ded7-4b2c-ab03-719e566d7765.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.lgd.74ec8550-ded7-4b2c-ab03-719e566d7765.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.lgd.74ec8550-ded7-4b2c-ab03-719e566d7765.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.6ba1a372-298f-45a4-a271-c1b51bd35142.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.6ba1a372-298f-45a4-a271-c1b51bd35142.reverse.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.6ba1a372-298f-45a4-a271-c1b51bd35142.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.6ba1a372-298f-45a4-a271-c1b51bd35142.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/mycost.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/mycost.logol.cbf5e617-6405-44da-9e68-ddedc5dfce62.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/mycost.logol.cbf5e617-6405-44da-9e68-ddedc5dfce62.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/mycost.logol.cbf5e617-6405-44da-9e68-ddedc5dfce62.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /<>/test/morphism.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR12)==>"aaa",+"wc" "tgca" [junit] mod1(LOGOLVAR13)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/morphism.lgd.43c702a1-97bf-4ddf-ab80-8c06090d1e9d.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.lgd.43c702a1-97bf-4ddf-ab80-8c06090d1e9d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.lgd.43c702a1-97bf-4ddf-ab80-8c06090d1e9d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.lgd.43c702a1-97bf-4ddf-ab80-8c06090d1e9d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat.logol.40c413c0-0865-4067-ad62-6e107ea35b44.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat.logol.40c413c0-0865-4067-ad62-6e107ea35b44.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat.logol.40c413c0-0865-4067-ad62-6e107ea35b44.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/parent_witherror2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror2.logol.fc465f4e-4a28-447b-85dd-0759ed1c2c12.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror2.logol.fc465f4e-4a28-447b-85dd-0759ed1c2c12.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror2.logol.fc465f4e-4a28-447b-85dd-0759ed1c2c12.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/external2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external2.logol.8f70fb56-295d-4092-bc77-bfcd90420c07.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external2.logol.8f70fb56-295d-4092-bc77-bfcd90420c07.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external2.logol.8f70fb56-295d-4092-bc77-bfcd90420c07.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_interspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_interspacer.logol.0202a6e0-4f8f-4ced-933b-369810fe3adb.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_interspacer.logol.0202a6e0-4f8f-4ced-933b-369810fe3adb.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_interspacer.logol.0202a6e0-4f8f-4ced-933b-369810fe3adb.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/notview.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notview.logol.6b311e8c-ac70-4e0e-850b-da21a2920020.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notview.logol.6b311e8c-ac70-4e0e-850b-da21a2920020.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notview.logol.6b311e8c-ac70-4e0e-850b-da21a2920020.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/repeat_anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_anyspacer.logol.dd888bd4-6ca8-43b1-b63d-531fa962cd9e.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_anyspacer.logol.dd888bd4-6ca8-43b1-b63d-531fa962cd9e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_anyspacer.logol.dd888bd4-6ca8-43b1-b63d-531fa962cd9e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/notrepeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notrepeat.logol.b7333a28-f645-4f61-a716-9874f01dc682.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notrepeat.logol.b7333a28-f645-4f61-a716-9874f01dc682.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notrepeat.logol.b7333a28-f645-4f61-a716-9874f01dc682.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /<>/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /<>/test/or_condition.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /<>/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition.logol.0eb32984-4764-4753-84b5-09b7990a6e11.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition.logol.0eb32984-4764-4753-84b5-09b7990a6e11.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition.logol.0eb32984-4764-4753-84b5-09b7990a6e11.0-41-all.xml [junit] ------------- ---------------- --------------- [junit] ------------- Standard Error ----------------- [junit] log4j:ERROR setFile(null,true) call failed. [junit] java.io.FileNotFoundException: /var/log/logol/logol.log (No such file or directory) [junit] at java.base/java.io.FileOutputStream.open0(Native Method) [junit] at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:237) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:158) [junit] at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) [junit] at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) [junit] at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) [junit] at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) [junit] at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) [junit] at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) [junit] at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) [junit] at org.apache.log4j.LogManager.(LogManager.java:127) [junit] at org.apache.log4j.Logger.getLogger(Logger.java:117) [junit] at org.irisa.genouest.logol.test.GrammarTest.(Unknown Source) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) [junit] at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [junit] at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490) [junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:250) [junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:260) [junit] at org.junit.runners.BlockJUnit4ClassRunner$2.runReflectiveCall(BlockJUnit4ClassRunner.java:309) [junit] at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) [junit] at org.junit.runners.BlockJUnit4ClassRunner.methodBlock(BlockJUnit4ClassRunner.java:311) [junit] at org.junit.runners.BlockJUnit4ClassRunner$1.evaluate(BlockJUnit4ClassRunner.java:100) [junit] at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:366) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:103) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:63) [junit] at org.junit.runners.ParentRunner$4.run(ParentRunner.java:331) [junit] at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:79) [junit] at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:329) [junit] at org.junit.runners.ParentRunner.access$100(ParentRunner.java:66) [junit] at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:293) [junit] at org.junit.runners.ParentRunner$3.evaluate(ParentRunner.java:306) [junit] at org.junit.runners.ParentRunner.run(ParentRunner.java:413) [junit] at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:50) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:535) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:1197) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:1042) [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] ------------- ---------------- --------------- [junit] Testcase: testAmbiguous(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch2(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch3(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is BUILD SUCCESSFUL Total time: 17 seconds mkdir -p test/tmp test/results ant -f build.xml doc Buildfile: /<>/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. doc: [exec] This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) [exec] restricted \write18 enabled. [exec] entering extended mode [exec] (./logol.tex [exec] LaTeX2e <2021-11-15> patch level 1 [exec] L3 programming layer <2022-02-24> [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls [exec] Document Class: article 2021/10/04 v1.4n Standard LaTeX document class [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) [exec] (/usr/share/texmf/tex/latex/swi-prolog/pldoc.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifpdf.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) [exec] (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) [exec] (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) [exec] (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) [exec] (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) [exec] (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) [exec] (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) [exec] (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty [exec] (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) [exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty [exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty [exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) [exec] (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) [exec] (/usr/share/texlive/texmf-dist/tex/latex/a4wide/a4wide.sty [exec] (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty [exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) [exec] (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/dcolumn.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/tools/calc.sty) [exec] (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty [exec] ! Missing \endcsname inserted. [exec] [exec] \protect [exec] l.535 \define@key{FV}{file_ext}[.tex] [exec] {\def\FancyVerbFileExtension{#1}} [exec] ? [exec] ! Emergency stop. [exec] [exec] \protect [exec] l.535 \define@key{FV}{file_ext}[.tex] [exec] {\def\FancyVerbFileExtension{#1}} [exec] ! ==> Fatal error occurred, no output PDF file produced! [exec] Transcript written on logol.log. [exec] mv: cannot stat 'logol.pdf': No such file or directory [exec] Result: 1 BUILD SUCCESSFUL Total time: 1 second rm -f prolog/process.so chrpath -d prolog/logol.exe chrpath -d prolog/preanalyse.exe make[1]: Leaving directory '/<>' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install rm -f debian/logol/usr/share/logol/prolog/*.c rm -f debian/logol/usr/share/logol/prolog/*.exe rm -f debian/logol/usr/share/logol/prolog/logol.properties rm -f debian/logol/usr/share/logol/tools/*.keep_old_script if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi if [ ! -e debian/logol-bin/usr/share/logol/prolog ]; then mkdir -p debian/logol-bin/usr/share/logol/prolog; fi ln -s /usr/lib/swi-prolog/lib/x86_64-linux/process.so debian/logol-bin/usr/share/logol/prolog/process.so make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/<>' rm -f test/tmp/* rm -f test/results/* dh_installexamples make[1]: Leaving directory '/<>' dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dwz: debian/logol-bin/usr/lib/logol/logol.exe: .debug_info section not present dwz: debian/logol-bin/usr/lib/logol/preanalyse.exe: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). debian/rules override_dh_strip make[1]: Entering directory '/<>' dh_strip -Xlogol.exe -Xpreanalyse.exe make[1]: Leaving directory '/<>' dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package logol: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing logol-bin (in debian/logol-bin); do_strip: , oemstrip: pkgstriptranslations: processing logol (in debian/logol); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/logol/DEBIAN/control, package logol, directory debian/logol .. removing usr/share/doc/logol/CHANGELOG.txt Searching for duplicated docs in dependency logol-bin... symlinking changelog.Debian.gz in logol to file in logol-bin pkgstripfiles: Running PNG optimization (using 4 cpus) for package logol ... pkgstripfiles: No PNG files. dpkg-deb: building package 'logol' in '../logol_1.7.9+dfsg-5_all.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/logol-bin/DEBIAN/control, package logol-bin, directory debian/logol-bin pkgstripfiles: Truncating usr/share/doc/logol-bin/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package logol-bin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'logol-bin' in '../logol-bin_1.7.9+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../logol_1.7.9+dfsg-5_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../logol_1.7.9+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-06-23T03:56:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ logol_1.7.9+dfsg-5_amd64.changes: --------------------------------- Format: 1.8 Date: Mon, 11 Apr 2022 16:38:53 +0200 Source: logol Binary: logol logol-bin Built-For-Profiles: noudeb Architecture: amd64 all Version: 1.7.9+dfsg-5 Distribution: kinetic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Pierre Gruet Description: logol - Pattern matching tool using Logol language logol-bin - Pattern matching tool using Logol language Closes: 1009295 Changes: logol (1.7.9+dfsg-5) unstable; urgency=medium . * Team upload * Upload to unstable to accompany auto-biojava-live transition (Closes: #1009295) Checksums-Sha1: f252b6c4c4104f9b0de496cc714b8cb7be0af48e 420232 logol-bin_1.7.9+dfsg-5_amd64.deb a7dba425cca484cdc0c74834fbeac707776d346c 1528800 logol_1.7.9+dfsg-5_all.deb 3d3026c7d716cb2de7acf5c6a1bc7a2a0af79162 12089 logol_1.7.9+dfsg-5_amd64.buildinfo Checksums-Sha256: 6cc359b198779dad6f9e835d2599defdf8892bb8d16042cb51490c41c89540d6 420232 logol-bin_1.7.9+dfsg-5_amd64.deb 2de85f1973bd1ed533dd0c323a796eafcb61b7071bed8283e448ebe27f9536ed 1528800 logol_1.7.9+dfsg-5_all.deb 0961aed8c902f2503b8db3aa7f8e2e659cfe05f111471ba7d554ceb9350b8021 12089 logol_1.7.9+dfsg-5_amd64.buildinfo Files: 1f518f105339debda68bd98270922ff6 420232 science optional logol-bin_1.7.9+dfsg-5_amd64.deb 7ed9897f8a61a9575b2735faab6e1b7b 1528800 science optional logol_1.7.9+dfsg-5_all.deb c4f2ecc69461c9b19a0ba4118cd78c5f 12089 science optional logol_1.7.9+dfsg-5_amd64.buildinfo /<>/logol_1.7.9+dfsg-5_amd64.changes.new could not be renamed to /<>/logol_1.7.9+dfsg-5_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: logol Binary: logol logol-bin Architecture: all amd64 Version: 1.7.9+dfsg-5 Checksums-Md5: 1f518f105339debda68bd98270922ff6 420232 logol-bin_1.7.9+dfsg-5_amd64.deb 7ed9897f8a61a9575b2735faab6e1b7b 1528800 logol_1.7.9+dfsg-5_all.deb Checksums-Sha1: f252b6c4c4104f9b0de496cc714b8cb7be0af48e 420232 logol-bin_1.7.9+dfsg-5_amd64.deb a7dba425cca484cdc0c74834fbeac707776d346c 1528800 logol_1.7.9+dfsg-5_all.deb Checksums-Sha256: 6cc359b198779dad6f9e835d2599defdf8892bb8d16042cb51490c41c89540d6 420232 logol-bin_1.7.9+dfsg-5_amd64.deb 2de85f1973bd1ed533dd0c323a796eafcb61b7071bed8283e448ebe27f9536ed 1528800 logol_1.7.9+dfsg-5_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 23 Jun 2022 03:56:25 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: ant (= 1.10.12-1), ant-optional (= 1.10.12-1), antlr3 (= 3.5.2-9), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2ubuntu1), base-passwd (= 3.5.52build1), bash (= 5.1-6ubuntu1), binutils (= 2.38.50.20220615-4ubuntu1), binutils-common (= 2.38.50.20220615-4ubuntu1), binutils-x86-64-linux-gnu (= 2.38.50.20220615-4ubuntu1), bsdextrautils (= 2.38-4ubuntu1), bsdutils (= 1:2.38-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), ca-certificates (= 20211016), ca-certificates-java (= 20190909), cassiopee (= 1.0.9-3build2), chrpath (= 0.16-2), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.3.0-3ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3build1), debconf (= 1.5.79ubuntu1), debhelper (= 13.7.1ubuntu1), debianutils (= 5.7-0.2), debugedit (= 1:5.0-4build1), default-jdk (= 2:1.11-72build2), default-jdk-headless (= 2:1.11-72build2), default-jre (= 2:1.11-72build2), default-jre-headless (= 2:1.11-72build2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu2), dpkg (= 1.21.8ubuntu1), dpkg-dev (= 1.21.8ubuntu1), dwz (= 0.14-1build2), file (= 1:5.41-4), findutils (= 4.8.0-1ubuntu3), fontconfig-config (= 2.13.1-4.4ubuntu1), fonts-dejavu-core (= 2.37-2build1), fonts-lmodern (= 2.005-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.3.0-3ubuntu1), gawk (= 1:5.1.0-1build3), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.3.0-3ubuntu1), gcc-11-base (= 11.3.0-3ubuntu1), gcc-12-base (= 12.1.0-2ubuntu1), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1build1), groff-base (= 1.22.4-8build1), gzip (= 1.10-4ubuntu4), hostname (= 3.23ubuntu2), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), java-common (= 0.72build2), junit4 (= 4.13.2-1), libacl1 (= 2.3.1-1), libactivation-java (= 1.2.0-2), libantlr3-runtime-java (= 3.5.2-9), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1ubuntu1), libasan6 (= 11.3.0-3ubuntu1), libasound2 (= 1.2.6.1-2), libasound2-data (= 1.2.6.1-2), libatinject-jsr330-api-java (= 1.0+ds1-5), libatomic1 (= 12.1.0-2ubuntu1), libattr1 (= 1:2.5.1-1build1), libaudit-common (= 1:3.0.7-1build1), libaudit1 (= 1:3.0.7-1build1), libavahi-client3 (= 0.8-5ubuntu5), libavahi-common-data (= 0.8-5ubuntu5), libavahi-common3 (= 0.8-5ubuntu5), libbinutils (= 2.38.50.20220615-4ubuntu1), libbiojava-java (= 1:1.9.5+dfsg-2), libbiojava1.9-java (= 1:1.9.5+dfsg-2), libblkid1 (= 2.38-4ubuntu1), libboost-serialization1.74.0 (= 1.74.0-14ubuntu4), libbrotli1 (= 1.0.9-2build6), libbsd0 (= 0.11.6-1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.35-0ubuntu3), libc-dev-bin (= 2.35-0ubuntu3), libc6 (= 2.35-0ubuntu3), libc6-dev (= 2.35-0ubuntu3), libcairo2 (= 1.16.0-5ubuntu2), libcap-ng0 (= 0.7.9-4), libcap2 (= 1:2.44-1build3), libcassie1v5 (= 1.0.9-3build2), libcc1-0 (= 12.1.0-2ubuntu1), libcom-err2 (= 1.46.5-2ubuntu2), libcommons-cli-java (= 1.4-2), libcommons-collections3-java (= 3.2.2-2), libcommons-configuration-java (= 1.10-5), libcommons-dbcp-java (= 1.4-7), libcommons-lang-java (= 2.6-10), libcommons-logging-java (= 1.2-3), libcommons-parent-java (= 43-1), libcommons-pool-java (= 1.6-4), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38.50.20220615-4ubuntu1), libctf0 (= 2.38.50.20220615-4ubuntu1), libcups2 (= 2.4.2-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.9), libdbus-1-3 (= 1.12.20-2ubuntu4), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.7.1ubuntu1), libdpkg-perl (= 1.21.8ubuntu1), libdrm-amdgpu1 (= 2.4.110-1ubuntu1), libdrm-common (= 2.4.110-1ubuntu1), libdrm-nouveau2 (= 2.4.110-1ubuntu1), libdrm-radeon1 (= 2.4.110-1ubuntu1), libdrm2 (= 2.4.110-1ubuntu1), libdw1 (= 0.187-1), libedit2 (= 3.1-20210910-1build1), libelf1 (= 0.187-1), libexpat1 (= 2.4.8-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontbox-java (= 1:1.8.16-2), libfontconfig1 (= 2.13.1-4.4ubuntu1), libfreetype6 (= 2.12.1+dfsg-3), libgcc-11-dev (= 11.3.0-3ubuntu1), libgcc-s1 (= 12.1.0-2ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgflags2.2 (= 2.2.2-2), libgif7 (= 5.2.1-2.5), libgl1 (= 1.4.0-1), libgl1-mesa-dri (= 22.0.5-1ubuntu1), libglapi-mesa (= 22.0.5-1ubuntu1), libglib2.0-0 (= 2.72.2-2), libglvnd0 (= 1.4.0-1), libglx-mesa0 (= 22.0.5-1ubuntu1), libglx0 (= 1.4.0-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.6-2ubuntu1), libgomp1 (= 12.1.0-2ubuntu1), libgoogle-glog0v6 (= 0.6.0-1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220615-4ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.19.2-2), libguava-java (= 29.0-6), libhamcrest-java (= 1.3-9), libharfbuzz0b (= 2.7.4-1ubuntu4), libhogweed6 (= 3.7.3-1build2), libice6 (= 2:1.0.10-1build2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.2-2build1), libisl23 (= 0.24-2build1), libitm1 (= 12.1.0-2ubuntu1), libjgraph-java (= 5.12.4.2+dfsg-5.1), libjgrapht0.8-java (= 0.8.3-5), libjpeg-turbo8 (= 2.1.2-0ubuntu1), libjpeg8 (= 8c-2ubuntu10), libjsr305-java (= 0.1~+svn49-11), libk5crypto3 (= 1.19.2-2), libkeyutils1 (= 1.6.1-3ubuntu1), libkpathsea6 (= 2022.20220321.62855-4), libkrb5-3 (= 1.19.2-2), libkrb5support0 (= 1.19.2-2), liblcms2-2 (= 2.12~rc1-2build2), libllvm14 (= 1:14.0.5-1), liblog4j1.2-java (= 1.2.17-11), liblsan0 (= 12.1.0-2ubuntu1), liblz4-1 (= 1.9.3-2build2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmail-java (= 1.6.5-1), libmd0 (= 1.0.4-1build1), libmount1 (= 2.38-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpdec3 (= 2.5.1-2build2), libmpfr6 (= 4.1.0-3build3), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.7.3-1build2), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libnspr4 (= 2:4.34-1), libnss3 (= 2:3.79-1), libossp-uuid16 (= 1.6.2-1.5build9), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.4.0-13ubuntu1), libpam-modules-bin (= 1.4.0-13ubuntu1), libpam-runtime (= 1.4.0-13ubuntu1), libpam0g (= 1.4.0-13ubuntu1), libpaper-utils (= 1.1.28build2), libpaper1 (= 1.1.28build2), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libpcsclite1 (= 1.9.8-1), libpdfbox-java (= 1:1.8.16-2), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.6-1), libpixman-1-0 (= 0.40.0-1build4), libpng16-16 (= 1.6.37-5), libptexenc1 (= 2022.20220321.62855-4), libpython3-stdlib (= 3.10.4-0ubuntu2), libpython3.10-minimal (= 3.10.5-1), libpython3.10-stdlib (= 3.10.5-1), libquadmath0 (= 12.1.0-2ubuntu1), libreadline8 (= 8.1.2-1.2), libruby3.0 (= 3.0.2-7ubuntu2), libseccomp2 (= 2.5.4-1ubuntu1), libselinux1 (= 3.4-1), libsensors-config (= 1:3.6.0-7ubuntu1), libsensors5 (= 1:3.6.0-7ubuntu1), libsigsegv2 (= 2.13-1ubuntu3), libsm6 (= 2:1.2.3-1build2), libsmartcols1 (= 2.38-4ubuntu1), libsqlite3-0 (= 3.38.5-1), libssl3 (= 3.0.3-5ubuntu3), libstdc++-11-dev (= 11.3.0-3ubuntu1), libstdc++6 (= 12.1.0-2ubuntu1), libstringtemplate4-java (= 4.0.8-2.1), libsub-override-perl (= 0.09-3), libsynctex2 (= 2022.20220321.62855-4), libsystemd0 (= 249.11-0ubuntu4), libtasn1-6 (= 4.18.0-4build1), libteckit0 (= 2.5.11+ds1-1), libtexlua53-5 (= 2022.20220321.62855-4), libtexluajit2 (= 2022.20220321.62855-4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2build1), libtirpc-dev (= 1.3.2-2build1), libtirpc3 (= 1.3.2-2build1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3ubuntu1), libubsan1 (= 12.1.0-2ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 249.11-0ubuntu4), libunistring2 (= 1.0-1), libunwind8 (= 1.3.2-2build3), libuuid1 (= 2.38-4ubuntu1), libvulkan1 (= 1.3.216.0-1), libx11-6 (= 2:1.7.5-1), libx11-data (= 2:1.7.5-1), libx11-xcb1 (= 2:1.7.5-1), libxalan2-java (= 2.7.2-4), libxau6 (= 1:1.0.9-1build5), libxaw7 (= 2:1.0.14-1), libxcb-dri2-0 (= 1.14-3ubuntu3), libxcb-dri3-0 (= 1.14-3ubuntu3), libxcb-glx0 (= 1.14-3ubuntu3), libxcb-present0 (= 1.14-3ubuntu3), libxcb-render0 (= 1.14-3ubuntu3), libxcb-shm0 (= 1.14-3ubuntu3), libxcb-sync1 (= 1.14-3ubuntu3), libxcb-xfixes0 (= 1.14-3ubuntu3), libxcb1 (= 1.14-3ubuntu3), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxerces2-java (= 2.12.2-1), libxext6 (= 2:1.3.4-1build1), libxfixes3 (= 1:6.0.0-1), libxft2 (= 2.3.4-1), libxi6 (= 2:1.8-1build1), libxml-commons-external-java (= 1.4.01-5), libxml-commons-resolver1.1-java (= 1.2-11), libxml2 (= 2.9.14+dfsg-1), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1build2), libxrender1 (= 1:0.9.10-1.1), libxshmfence1 (= 1.3-1build4), libxt6 (= 1:1.2.1-1), libxtst6 (= 2:1.2.3-1.1), libxxf86vm1 (= 1:1.1.4-1build3), libyaml-0-2 (= 0.2.2-1build2), libzstd1 (= 1.5.2+dfsg-1), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 5.15.0-27.28), login (= 1:4.11.1+dfsg1-2ubuntu1), lsb-base (= 11.1.0ubuntu4), lto-disabled-list (= 27), m4 (= 1.4.18-5ubuntu2), make (= 4.3-4.1build1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), openjdk-11-jdk (= 11.0.15+10-0ubuntu0.22.04.1), openjdk-11-jdk-headless (= 11.0.15+10-0ubuntu0.22.04.1), openjdk-11-jre (= 11.0.15+10-0ubuntu0.22.04.1), openjdk-11-jre-headless (= 11.0.15+10-0ubuntu0.22.04.1), openssl (= 3.0.3-5ubuntu3), patch (= 2.7.6-7build2), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), po-debconf (= 1.0.21+nmu1), preview-latex-style (= 12.2-1ubuntu1), python3 (= 3.10.4-0ubuntu2), python3-minimal (= 3.10.4-0ubuntu2), python3.10 (= 3.10.5-1), python3.10-minimal (= 3.10.5-1), rake (= 13.0.6-3), readline-common (= 8.1.2-1.2), rpcsvc-proto (= 1.4.2-0ubuntu6), ruby (= 1:3.0~exp1), ruby-cassiopee (= 0.1.13-1.1), ruby-net-telnet (= 0.1.1-2.1), ruby-rubygems (= 3.3.15-1), ruby-text (= 1.3.1-1), ruby-webrick (= 1.7.0-3), ruby-xmlrpc (= 0.3.2-2), ruby3.0 (= 3.0.2-7ubuntu2), rubygems-integration (= 1.18), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), swi-prolog (= 8.4.2+dfsg-2ubuntu1), swi-prolog-core (= 8.4.2+dfsg-2ubuntu1), swi-prolog-core-packages (= 8.4.2+dfsg-2ubuntu1), swi-prolog-doc (= 8.4.2+dfsg-2ubuntu1), swi-prolog-nox (= 8.4.2+dfsg-2ubuntu1), swi-prolog-x (= 8.4.2+dfsg-2ubuntu1), sysvinit-utils (= 3.01-1ubuntu1), t1utils (= 1.41-4build2), tar (= 1.34+dfsg-1build3), tex-common (= 6.17), texlive (= 2022.20220405-2), texlive-base (= 2022.20220405-2), texlive-binaries (= 2022.20220321.62855-4), texlive-fonts-recommended (= 2022.20220405-2), texlive-latex-base (= 2022.20220405-2), texlive-latex-extra (= 2022.20220405-3), texlive-latex-recommended (= 2022.20220405-2), texlive-pictures (= 2022.20220405-2), texlive-plain-generic (= 2022.20220405-3), ucf (= 3.0043), util-linux (= 2.38-4ubuntu1), util-linux-extra (= 2.38-4ubuntu1), x11-common (= 1:7.7+23ubuntu2), xdg-utils (= 1.1.3-4.1ubuntu2), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-2ubuntu9) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1649687933" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ logol-bin_1.7.9+dfsg-5_amd64.deb -------------------------------- new Debian package, version 2.0. size 420232 bytes: control archive=796 bytes. 826 bytes, 19 lines control 339 bytes, 5 lines md5sums Package: logol-bin Source: logol Version: 1.7.9+dfsg-5 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 511 Depends: libc6 (>= 2.34), swi-prolog-core (>= 8.4.2+dfsg), swi-prolog, swi-prolog-abi-binary-68 Section: science Priority: optional Homepage: http://logol.genouest.org Description: Pattern matching tool using Logol language This package contains the Prolog binaries used by Logol to parse the sequence and match the grammar. . Logol is a pattern matching tool using the Logol language. It searches with a specific grammar a pattern in small or large sequences (DNA, RNA, protein). It provides complete result matching with the original grammar in the results. drwxr-xr-x root/root 0 2022-04-11 14:38 ./ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/lib/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/lib/logol/ -rwxr-xr-x root/root 250594 2022-04-11 14:38 ./usr/lib/logol/logol.exe -rwxr-xr-x root/root 250529 2022-04-11 14:38 ./usr/lib/logol/preanalyse.exe drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc/logol-bin/ -rw-r--r-- root/root 1151 2022-04-11 14:38 ./usr/share/doc/logol-bin/changelog.Debian.gz -rw-r--r-- root/root 1458 2022-04-10 20:31 ./usr/share/doc/logol-bin/copyright drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 222 2022-04-10 20:31 ./usr/share/lintian/overrides/logol-bin drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/logol/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/logol/prolog/ lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/prolog/logol.exe -> ../../../lib/logol/logol.exe lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/prolog/preanalyse.exe -> ../../../lib/logol/preanalyse.exe lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/prolog/process.so -> ../../../lib/swi-prolog/lib/x86_64-linux/process.so logol_1.7.9+dfsg-5_all.deb -------------------------- new Debian package, version 2.0. size 1528800 bytes: control archive=4240 bytes. 28 bytes, 1 lines conffiles 942 bytes, 16 lines control 10418 bytes, 137 lines md5sums Package: logol Version: 1.7.9+dfsg-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1860 Depends: default-jre | java7-runtime, ruby, gawk, libbiojava-java (>= 1:1.9.5+dfsg), antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, libmail-java, liblog4j1.2-java, cassiopee, logol-bin Suggests: ruby-cassiopee Section: science Priority: optional Homepage: http://logol.genouest.org Description: Pattern matching tool using Logol language Logol is a pattern matching tool using the Logol language. It searches with a specific grammar for a pattern in small or large sequences (DNA, RNA, protein). It provides complete result matching with the original grammar in the results. drwxr-xr-x root/root 0 2022-04-11 14:38 ./ drwxr-xr-x root/root 0 2022-04-11 14:38 ./etc/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./etc/logol/ -rw-r--r-- root/root 1704 2022-04-11 14:38 ./etc/logol/logol.properties drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/bin/ lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/bin/LogolExec -> ../share/logol/LogolExec.sh lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/bin/LogolMultiExec -> ../share/logol/LogolMultiExec.sh drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc-base/ -rw-r--r-- root/root 184 2022-04-10 20:31 ./usr/share/doc-base/logol.logol drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc/logol/ -rw-r--r-- root/root 2943 2018-12-20 15:13 ./usr/share/doc/logol/LogolGrammar.txt -rw-r--r-- root/root 211 2022-04-10 20:31 ./usr/share/doc/logol/README.Debian -rw-r--r-- root/root 3622 2018-12-20 15:13 ./usr/share/doc/logol/README.md -rw-r--r-- root/root 358 2022-04-10 20:31 ./usr/share/doc/logol/README.source -rw-r--r-- root/root 553 2022-04-10 20:31 ./usr/share/doc/logol/README.test -rw-r--r-- root/root 250 2018-12-20 15:13 ./usr/share/doc/logol/SWI-README lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/doc/logol/changelog.Debian.gz -> ../logol-bin/changelog.Debian.gz -rw-r--r-- root/root 1458 2022-04-10 20:31 ./usr/share/doc/logol/copyright drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc/logol/examples/ -rw-r--r-- root/root 15 2018-12-20 15:13 ./usr/share/doc/logol/examples/1799.fasta -rw-r--r-- root/root 70 2018-12-20 15:13 ./usr/share/doc/logol/examples/1799.logol -rw-r--r-- root/root 25 2018-12-20 15:13 ./usr/share/doc/logol/examples/1800.fasta -rw-r--r-- root/root 56 2018-12-20 15:13 ./usr/share/doc/logol/examples/1800.logol -rw-r--r-- root/root 118 2018-12-20 15:13 ./usr/share/doc/logol/examples/1806.logol -rw-r--r-- root/root 33 2018-12-20 15:13 ./usr/share/doc/logol/examples/2235.fasta -rw-r--r-- root/root 65 2018-12-20 15:13 ./usr/share/doc/logol/examples/2235.logol -rw-r--r-- root/root 35 2018-12-20 15:13 ./usr/share/doc/logol/examples/2242.fasta -rw-r--r-- root/root 78 2018-12-20 15:13 ./usr/share/doc/logol/examples/2242.logol -rw-r--r-- root/root 21 2018-12-20 15:13 ./usr/share/doc/logol/examples/2243.fasta -rw-r--r-- root/root 52 2018-12-20 15:13 ./usr/share/doc/logol/examples/2243.logol -rw-r--r-- root/root 38 2018-12-20 15:13 ./usr/share/doc/logol/examples/2244.fasta -rw-r--r-- root/root 76 2018-12-20 15:13 ./usr/share/doc/logol/examples/2244.logol -rw-r--r-- root/root 3685 2018-12-20 15:13 ./usr/share/doc/logol/examples/all.lgd -rw-r--r-- root/root 52 2018-12-20 15:13 ./usr/share/doc/logol/examples/all.logol -rw-r--r-- root/root 82 2018-12-20 15:13 ./usr/share/doc/logol/examples/alphabet.logol -rw-r--r-- root/root 81 2018-12-20 15:13 ./usr/share/doc/logol/examples/ambiguous.logol -rw-r--r-- root/root 3242 2018-12-20 15:13 ./usr/share/doc/logol/examples/anyspacer.lgd -rw-r--r-- root/root 56 2018-12-20 15:13 ./usr/share/doc/logol/examples/anyspacer.logol -rw-r--r-- root/root 3681 2018-12-20 15:13 ./usr/share/doc/logol/examples/begin.lgd -rw-r--r-- root/root 88 2018-12-20 15:13 ./usr/share/doc/logol/examples/begin.logol -rw-r--r-- root/root 98 2018-12-20 15:13 ./usr/share/doc/logol/examples/begin_postpone.logol -rw-r--r-- root/root 126 2018-12-20 15:13 ./usr/share/doc/logol/examples/call_model.logol -rw-r--r-- root/root 124 2018-12-20 15:13 ./usr/share/doc/logol/examples/call_model2.logol -rw-r--r-- root/root 109 2018-12-20 15:13 ./usr/share/doc/logol/examples/call_model3.logol -rw-r--r-- root/root 74 2018-12-20 15:13 ./usr/share/doc/logol/examples/call_model4.logol -rw-r--r-- root/root 132 2018-12-20 15:13 ./usr/share/doc/logol/examples/comment.logol -rw-r--r-- root/root 214 2018-12-20 15:13 ./usr/share/doc/logol/examples/comment2.logol -rw-r--r-- root/root 54 2018-12-20 15:13 ./usr/share/doc/logol/examples/complement.logol -rw-r--r-- root/root 95 2018-12-20 15:13 ./usr/share/doc/logol/examples/complex.logol -rw-r--r-- root/root 84 2018-12-20 15:13 ./usr/share/doc/logol/examples/cost_postpone.logol -rw-r--r-- root/root 65 2018-12-20 15:13 ./usr/share/doc/logol/examples/end.logol -rw-r--r-- root/root 97 2018-12-20 15:13 ./usr/share/doc/logol/examples/end_of_stream1.logol -rw-r--r-- root/root 97 2018-12-20 15:13 ./usr/share/doc/logol/examples/end_of_stream2.logol -rw-r--r-- root/root 83 2018-12-20 15:13 ./usr/share/doc/logol/examples/external.logol -rw-r--r-- root/root 86 2018-12-20 15:13 ./usr/share/doc/logol/examples/external2.logol -rw-r--r-- root/root 83 2018-12-20 15:13 ./usr/share/doc/logol/examples/fix2244.logol -rw-r--r-- root/root 93 2018-12-20 15:13 ./usr/share/doc/logol/examples/halt.logol -rw-r--r-- root/root 43 2018-12-20 15:13 ./usr/share/doc/logol/examples/indel.fasta -rw-r--r-- root/root 48 2018-12-20 15:13 ./usr/share/doc/logol/examples/indel.logol -rw-r--r-- root/root 1271 2018-12-20 15:13 ./usr/share/doc/logol/examples/logol.properties -rw-r--r-- root/root 130 2018-12-20 15:13 ./usr/share/doc/logol/examples/metacontrol.logol -rw-r--r-- root/root 3268 2018-12-20 15:13 ./usr/share/doc/logol/examples/morphism.lgd -rw-r--r-- root/root 76 2018-12-20 15:13 ./usr/share/doc/logol/examples/morphism.logol -rw-r--r-- root/root 146 2018-12-20 15:13 ./usr/share/doc/logol/examples/morphism_var.logol -rw-r--r-- root/root 106 2018-12-20 15:13 ./usr/share/doc/logol/examples/multiple_model.logol -rw-r--r-- root/root 111 2018-12-20 15:13 ./usr/share/doc/logol/examples/mycost.logol -rw-r--r-- root/root 3286 2018-12-20 15:13 ./usr/share/doc/logol/examples/negcontent.lgd -rw-r--r-- root/root 76 2018-12-20 15:13 ./usr/share/doc/logol/examples/negcontent.logol -rw-r--r-- root/root 69 2018-12-20 15:13 ./usr/share/doc/logol/examples/negcontent2.logol -rw-r--r-- root/root 77 2018-12-20 15:13 ./usr/share/doc/logol/examples/negcontent3.logol -rw-r--r-- root/root 70 2018-12-20 15:13 ./usr/share/doc/logol/examples/notrepeat.logol -rw-r--r-- root/root 90 2018-12-20 15:13 ./usr/share/doc/logol/examples/notview.logol -rw-r--r-- root/root 3148 2018-12-20 15:13 ./usr/share/doc/logol/examples/optimal.lgd -rw-r--r-- root/root 45 2018-12-20 15:13 ./usr/share/doc/logol/examples/optimal.logol -rw-r--r-- root/root 90 2018-12-20 15:13 ./usr/share/doc/logol/examples/or_condition.logol -rw-r--r-- root/root 73 2018-12-20 15:13 ./usr/share/doc/logol/examples/or_condition2.logol -rw-r--r-- root/root 63 2018-12-20 15:13 ./usr/share/doc/logol/examples/overlap.logol -rw-r--r-- root/root 103 2018-12-20 15:13 ./usr/share/doc/logol/examples/parent_exact.logol -rw-r--r-- root/root 87 2018-12-20 15:13 ./usr/share/doc/logol/examples/parent_witherror.logol -rw-r--r-- root/root 78 2018-12-20 15:13 ./usr/share/doc/logol/examples/parent_witherror2.logol -rw-r--r-- root/root 54 2018-12-20 15:13 ./usr/share/doc/logol/examples/partialcomplement.logol -rw-r--r-- root/root 68 2018-12-20 15:13 ./usr/share/doc/logol/examples/postponemodel.logol -rw-r--r-- root/root 39 2018-12-20 15:13 ./usr/share/doc/logol/examples/protein.fasta -rw-r--r-- root/root 38 2018-12-20 15:13 ./usr/share/doc/logol/examples/protein.logol -rw-r--r-- root/root 70 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat.logol -rw-r--r-- root/root 68 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat0.logol -rw-r--r-- root/root 63 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat2.logol -rw-r--r-- root/root 63 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat_any.logol -rw-r--r-- root/root 64 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat_anyspacer.logol -rw-r--r-- root/root 72 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat_interspacer.logol -rw-r--r-- root/root 72 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat_overlap.logol -rw-r--r-- root/root 70 2018-12-20 15:13 ./usr/share/doc/logol/examples/repeat_startspacer.logol drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc/logol/examples/results/ -rw-r--r-- root/root 121 2018-12-20 15:13 ./usr/share/doc/logol/examples/reverse.logol -rw-r--r-- root/root 1236 2018-12-20 15:13 ./usr/share/doc/logol/examples/ruby-cassiopee.properties -rw-r--r-- root/root 118 2018-12-20 15:13 ./usr/share/doc/logol/examples/test.fasta drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/doc/logol/examples/tmp/ -rw-r--r-- root/root 3863 2018-12-20 15:13 ./usr/share/doc/logol/examples/variable.lgd -rw-r--r-- root/root 80 2018-12-20 15:13 ./usr/share/doc/logol/examples/variable.logol -rw-r--r-- root/root 83 2018-12-20 15:13 ./usr/share/doc/logol/examples/variable_postcontent.logol -rw-r--r-- root/root 92 2018-12-20 15:13 ./usr/share/doc/logol/examples/variable_postcontent_witherror.logol -rw-r--r-- root/root 83 2018-12-20 15:13 ./usr/share/doc/logol/examples/variable_unknown.logol -rw-r--r-- root/root 81 2018-12-20 15:13 ./usr/share/doc/logol/examples/variablewithdistance.logol -rw-r--r-- root/root 80 2018-12-20 15:13 ./usr/share/doc/logol/examples/variablewithdistance2.logol -rw-r--r-- root/root 89 2018-12-20 15:13 ./usr/share/doc/logol/examples/variablewitherror.logol -rw-r--r-- root/root 88 2018-12-20 15:13 ./usr/share/doc/logol/examples/variablewitherroranddistance.logol -rw-r--r-- root/root 53 2018-12-20 15:13 ./usr/share/doc/logol/examples/view_begin.logol -rw-r--r-- root/root 105 2018-12-20 15:13 ./usr/share/doc/logol/examples/vmatch.fasta -rw-r--r-- root/root 267 2018-12-20 15:13 ./usr/share/doc/logol/examples/vmatch.logol -rw-r--r-- root/root 1269 2018-12-20 15:13 ./usr/share/doc/logol/examples/vmatch.properties -rw-r--r-- root/root 29 2018-12-20 15:13 ./usr/share/doc/logol/examples/vmatch2.logol -rw-r--r-- root/root 41 2018-12-20 15:13 ./usr/share/doc/logol/examples/vmatch3.logol -rw-r--r-- root/root 65554 2018-12-20 15:13 ./usr/share/doc/logol/logol-usage.pdf.gz -rw-r--r-- root/root 405 2022-04-10 20:31 ./usr/share/doc/logol/run-unit-test -rw-r--r-- root/root 1227667 2018-12-20 15:13 ./usr/share/doc/logol/tutorial.pdf.gz drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 200 2022-04-10 20:31 ./usr/share/lintian/overrides/logol drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/logol/ -rwxr-xr-x root/root 1452 2022-04-11 14:38 ./usr/share/logol/LogolExec.sh -rwxr-xr-x root/root 1556 2022-04-11 14:38 ./usr/share/logol/LogolMultiExec.sh -rwxr-xr-x root/root 1069 2022-04-11 14:38 ./usr/share/logol/Model2Grammar.sh -rwxr-xr-x root/root 827 2018-12-20 15:13 ./usr/share/logol/convert2fasta.sh -rwxr-xr-x root/root 825 2018-12-20 15:13 ./usr/share/logol/convert2gff.sh drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/ -rw-r--r-- root/root 188369 2022-04-11 14:38 ./usr/share/logol/lib/LogolExec.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/antlr.jar -> ../../java/antlr3-runtime.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/biojava.jar -> ../../java/biojava.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/commons-cli.jar -> ../../java/commons-cli.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/commons-collections.jar -> ../../java/commons-collections3.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/commons-configuration.jar -> ../../java/commons-configuration.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/commons-lang.jar -> ../../java/commons-lang.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/commons-logging.jar -> ../../java/commons-logging.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/log4j-1.2.jar -> ../../java/log4j-1.2.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/mail.jar -> ../../java/javax.mail.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/serializer.jar -> ../../java/serializer.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/xalan.jar -> ../../java/xalan2.jar lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/lib/xercesImpl.jar -> ../../java/xercesImpl.jar -rw-r--r-- root/root 725 2022-04-11 14:38 ./usr/share/logol/log4j.properties drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/logol/prolog/ -rw-r--r-- root/root 250 2018-12-20 15:13 ./usr/share/logol/prolog/SWI-README -rw-r--r-- root/root 1865 2018-12-20 15:13 ./usr/share/logol/prolog/logol.merge.xsl -rw-r--r-- root/root 4806 2018-12-20 15:13 ./usr/share/logol/prolog/logol.order.xsl -rw-r--r-- root/root 135137 2022-04-11 14:38 ./usr/share/logol/prolog/logol.pl lrwxrwxrwx root/root 0 2022-04-11 14:38 ./usr/share/logol/prolog/logol.properties -> /etc/logol/logol.properties -rw-r--r-- root/root 143 2018-12-20 15:13 ./usr/share/logol/prolog/mail.tpl -rw-r--r-- root/root 72 2018-12-20 15:13 ./usr/share/logol/prolog/mapfile.dna -rw-r--r-- root/root 524 2018-12-20 15:13 ./usr/share/logol/prolog/match.dtd -rw-r--r-- root/root 1097 2018-12-20 15:13 ./usr/share/logol/prolog/optimal.pro -rw-r--r-- root/root 13652 2018-12-20 15:13 ./usr/share/logol/prolog/sicstus.pl -rw-r--r-- root/root 96 2018-12-20 15:13 ./usr/share/logol/prolog/swi-logol.pl drwxr-xr-x root/root 0 2018-12-20 15:13 ./usr/share/logol/prolog/unitTest/ -rw-r--r-- root/root 5700 2018-12-20 15:13 ./usr/share/logol/prolog/unitTest/plunittest.pro -rw-r--r-- root/root 7269 2018-12-20 15:13 ./usr/share/logol/prolog/unitTest/sampleUnit.pro -rw-r--r-- root/root 188 2018-12-20 15:13 ./usr/share/logol/prolog/unitTest/swi-unit.pl drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/logol/tools/ -rw-r--r-- root/root 181 2018-12-20 15:13 ./usr/share/logol/tools/README.txt -rw-r--r-- root/root 103 2018-12-20 15:13 ./usr/share/logol/tools/amb.map -rwxr-xr-x root/root 2216 2018-12-20 15:13 ./usr/share/logol/tools/cassiopeeSearch.rb -rwxr-xr-x root/root 167 2018-12-20 15:13 ./usr/share/logol/tools/generate-doc.sh -rw-r--r-- root/root 10201 2022-04-11 14:38 ./usr/share/logol/tools/logol.log -rwxr-xr-x root/root 3924 2022-04-11 14:38 ./usr/share/logol/tools/logolIndex.rb -rwxr-xr-x root/root 878 2022-04-11 14:38 ./usr/share/logol/tools/logolSearch.rb -rwxr-xr-x root/root 499 2018-12-20 15:13 ./usr/share/logol/tools/logolSearch.sh -rwxr-xr-x root/root 48 2018-12-20 15:13 ./usr/share/logol/tools/mycostfunction -rw-r--r-- root/root 15373 2018-12-20 15:13 ./usr/share/logol/tools/pldoc.sty.upstream -rwxr-xr-x root/root 1643 2018-12-20 15:13 ./usr/share/logol/tools/suffixSearch.rb -rw-r--r-- root/root 121 2018-12-20 15:13 ./usr/share/logol/tools/swidoc.pl drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/man/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./usr/share/man/man1/ -rw-r--r-- root/root 990 2022-04-11 14:38 ./usr/share/man/man1/LogolExec.1.gz -rw-r--r-- root/root 1143 2022-04-11 14:38 ./usr/share/man/man1/LogolMultiExec.1.gz drwxr-xr-x root/root 0 2022-04-11 14:38 ./var/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./var/lib/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./var/lib/logol/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./var/lib/logol/results/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./var/log/ drwxr-xr-x root/root 0 2022-04-11 14:38 ./var/log/logol/ +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 12348 Build-Time: 31 Distribution: kinetic Host Architecture: amd64 Install-Time: 54 Job: logol_1.7.9+dfsg-5.dsc Machine Architecture: amd64 Package: logol Package-Time: 86 Source-Version: 1.7.9+dfsg-5 Space: 12348 Status: successful Version: 1.7.9+dfsg-5 -------------------------------------------------------------------------------- Finished at 2022-06-23T03:56:26Z Build needed 00:01:26, 12348k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=kinetic --arch=amd64 PACKAGEBUILD-24034000 Scanning for processes to kill in build PACKAGEBUILD-24034000