https://launchpad.net/ubuntu/+archive/test-rebuild-20210927-impish/+build/22118462 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-046 4.15.0-158-generic #166-Ubuntu SMP Fri Sep 17 19:37:52 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_202~502~ubuntu18.04.1 python3-lpbuildd_202~502~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 28 Sep 22:08:54 ntpdate[1821]: adjust time server 10.211.37.1 offset -0.001733 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22118462 --image-type chroot /home/buildd/filecache-default/470b94eb81e7101f5c7afd2cf17d7483b3ea9d4e Creating target for build PACKAGEBUILD-22118462 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22118462 Starting target for build PACKAGEBUILD-22118462 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22118462 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish main' 'deb http://ftpmaster.internal/ubuntu impish main universe' Overriding sources.list in build-PACKAGEBUILD-22118462 RUN: /usr/share/launchpad-buildd/bin/in-target add-trusted-keys --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22118462 Adding trusted keys to build-PACKAGEBUILD-22118462 Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). OK Warning: apt-key is deprecated. Manage keyring files in trusted.gpg.d instead (see apt-key(8)). /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2018-archive.gpg ------------------------------------------------------ pub rsa4096 2018-09-17 [SC] F6EC B376 2474 EDA9 D21B 7022 8719 20D1 991B C93C uid [ unknown] Ubuntu Archive Automatic Signing Key (2018) RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22118462 Updating target for build PACKAGEBUILD-22118462 Get:1 http://ftpmaster.internal/ubuntu impish InRelease [269 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish InRelease [17.5 kB] Get:3 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main amd64 Packages [22.5 kB] Get:4 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main Translation-en [10.5 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 Packages [1407 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu impish/universe amd64 Packages [13.5 MB] Get:8 http://ftpmaster.internal/ubuntu impish/universe Translation-en [5459 kB] Fetched 21.2 MB in 9s (2474 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libffi8ubuntu1* The following NEW packages will be installed: cpp-11 g++-11 gcc-11 libexpat1 libffi8 libgcc-11-dev libmpdec3 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib libstdc++-11-dev media-types python3 python3-minimal python3-psutil python3.9 python3.9-minimal The following packages will be upgraded: advancecomp apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-10 dash debconf diffutils dpkg dpkg-dev e2fsprogs findutils g++ g++-10 gcc gcc-10 gcc-10-base gcc-11-base gpg gpg-agent gpgconf gpgv grep gzip libapparmor1 libapt-pkg6.0 libasan6 libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdevmapper1.02.1 libdpkg-perl libext2fs2 libgcc-10-dev libgcc-s1 libgcrypt20 libgnutls30 libgomp1 libgssapi-krb5-2 libhogweed6 libidn2-0 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblz4-1 liblzma5 libmount1 libnettle8 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.32 libprocps8 libquadmath0 libreadline8 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login logsave lto-disabled-list mount openssl passwd perl perl-base perl-modules-5.32 pinentry-curses pkgbinarymangler procps readline-common systemd systemd-sysv systemd-timesyncd sysvinit-utils usrmerge util-linux xz-utils zlib1g 124 upgraded, 17 newly installed, 1 to remove and 0 not upgraded. Need to get 272 MB of archives. After this operation, 516 MB of additional disk space will be used. Get:1 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main amd64 dpkg amd64 1.20.9ubuntu13 [1265 kB] Get:2 http://ftpmaster.internal/ubuntu impish/main amd64 libcrypt-dev amd64 1:4.4.18-4ubuntu1 [104 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main amd64 libnsl-dev amd64 1.3.0-2 [66.2 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main amd64 libc6-dev amd64 2.34-0ubuntu2 [1886 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main amd64 g++ amd64 4:11.2.0-1ubuntu1 [1412 B] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main amd64 gcc amd64 4:11.2.0-1ubuntu1 [5112 B] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main amd64 cpp amd64 4:11.2.0-1ubuntu1 [27.7 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main amd64 dpkg-dev all 1.20.9ubuntu13 [938 kB] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/volatile/ubuntu impish/main amd64 libdpkg-perl all 1.20.9ubuntu13 [235 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main amd64 libc-dev-bin amd64 2.34-0ubuntu2 [20.3 kB] Get:11 http://ftpmaster.internal/ubuntu impish/main amd64 libcrypt1 amd64 1:4.4.18-4ubuntu1 [75.6 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main amd64 libtirpc-common all 1.3.2-2 [7674 B] Get:13 http://ftpmaster.internal/ubuntu impish/main amd64 libtirpc-dev amd64 1.3.2-2 [192 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main amd64 libk5crypto3 amd64 1.18.3-6 [85.2 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5support0 amd64 1.18.3-6 [32.1 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main amd64 libkrb5-3 amd64 1.18.3-6 [354 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main amd64 libgssapi-krb5-2 amd64 1.18.3-6 [143 kB] Get:18 http://ftpmaster.internal/ubuntu impish/main amd64 libcom-err2 amd64 1.46.3-1ubuntu3 [10.7 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main amd64 libperl5.32 amd64 5.32.1-3ubuntu3 [4713 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main amd64 perl amd64 5.32.1-3ubuntu3 [227 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main amd64 perl-base amd64 5.32.1-3ubuntu3 [1745 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main amd64 perl-modules-5.32 all 5.32.1-3ubuntu3 [2945 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8ubuntu1 [673 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu7 [58.1 kB] Get:25 http://ftpmaster.internal/ubuntu impish/main amd64 debconf all 1.5.77 [121 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main amd64 libc6 amd64 2.34-0ubuntu2 [3028 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main amd64 libc-bin amd64 2.34-0ubuntu2 [1023 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main amd64 libssl1.1 amd64 1.1.1l-1ubuntu1 [1446 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main amd64 libtirpc3 amd64 1.3.2-2 [81.5 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main amd64 libnsl2 amd64 1.3.0-2 [39.0 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main amd64 linux-libc-dev amd64 5.13.0-16.16 [1275 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main amd64 libasan6 amd64 11.2.0-7ubuntu2 [2280 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main amd64 libubsan1 amd64 11.2.0-7ubuntu2 [920 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main amd64 libtsan0 amd64 11.2.0-7ubuntu2 [2259 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main amd64 libquadmath0 amd64 11.2.0-7ubuntu2 [154 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main amd64 liblsan0 amd64 11.2.0-7ubuntu2 [974 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main amd64 libitm1 amd64 11.2.0-7ubuntu2 [30.0 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main amd64 libgomp1 amd64 11.2.0-7ubuntu2 [117 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main amd64 gcc-11-base amd64 11.2.0-7ubuntu2 [20.5 kB] Get:40 http://ftpmaster.internal/ubuntu impish/main amd64 libgcc-s1 amd64 11.2.0-7ubuntu2 [45.6 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main amd64 libcc1-0 amd64 11.2.0-7ubuntu2 [53.9 kB] Get:42 http://ftpmaster.internal/ubuntu impish/main amd64 libatomic1 amd64 11.2.0-7ubuntu2 [10.0 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main amd64 libstdc++6 amd64 11.2.0-7ubuntu2 [656 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main amd64 base-files amd64 11.1ubuntu3 [60.9 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main amd64 bash amd64 5.1-3ubuntu1 [731 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main amd64 bsdutils amd64 1:2.36.1-8ubuntu1 [83.1 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main amd64 dash amd64 0.5.11+git20210120+802ebd4-1 [87.3 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main amd64 diffutils amd64 1:3.8-0ubuntu1 [205 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main amd64 findutils amd64 4.8.0-1ubuntu2 [332 kB] Get:50 http://ftpmaster.internal/ubuntu impish/main amd64 grep amd64 3.7-0ubuntu1 [195 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main amd64 gzip amd64 1.10-4ubuntu1 [92.9 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main amd64 login amd64 1:4.8.1-1ubuntu9 [222 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main amd64 util-linux amd64 2.36.1-8ubuntu1 [1016 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main amd64 base-passwd amd64 3.5.51 [48.5 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main amd64 sysvinit-utils amd64 2.96-7ubuntu1 [20.1 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main amd64 libgcrypt20 amd64 1.8.7-5ubuntu2 [468 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main amd64 liblz4-1 amd64 1.9.3-2 [52.9 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main amd64 liblzma5 amd64 5.2.5-2 [96.5 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main amd64 systemd-sysv amd64 248.3-1ubuntu7 [10.5 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main amd64 systemd-timesyncd amd64 248.3-1ubuntu7 [30.8 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main amd64 libapparmor1 amd64 3.0.3-0ubuntu1 [38.4 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main amd64 libaudit-common all 1:3.0-2ubuntu2 [4788 B] Get:63 http://ftpmaster.internal/ubuntu impish/main amd64 libaudit1 amd64 1:3.0-2ubuntu2 [39.8 kB] Get:64 http://ftpmaster.internal/ubuntu impish/main amd64 libblkid1 amd64 2.36.1-8ubuntu1 [97.7 kB] Get:65 http://ftpmaster.internal/ubuntu impish/main amd64 libudev1 amd64 248.3-1ubuntu7 [76.0 kB] Get:66 http://ftpmaster.internal/ubuntu impish/main amd64 libdevmapper1.02.1 amd64 2:1.02.175-2.1ubuntu1 [128 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main amd64 libuuid1 amd64 2.36.1-8ubuntu1 [23.3 kB] Get:68 http://ftpmaster.internal/ubuntu impish/main amd64 libcryptsetup12 amd64 2:2.3.6-0ubuntu1 [213 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main amd64 libnettle8 amd64 3.7.3-1 [147 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main amd64 libhogweed6 amd64 3.7.3-1 [195 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main amd64 libunistring2 amd64 0.9.10-6 [503 kB] Get:72 http://ftpmaster.internal/ubuntu impish/main amd64 libidn2-0 amd64 2.3.1-1 [49.8 kB] Get:73 http://ftpmaster.internal/ubuntu impish/main amd64 libffi8 amd64 3.4.2-1ubuntu5 [21.8 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main amd64 libp11-kit0 amd64 0.23.22-1build1 [254 kB] Get:75 http://ftpmaster.internal/ubuntu impish/main amd64 libgnutls30 amd64 3.7.1-5ubuntu1 [956 kB] Get:76 http://ftpmaster.internal/ubuntu impish/main amd64 libzstd1 amd64 1.4.8+dfsg-2.1 [290 kB] Get:77 http://ftpmaster.internal/ubuntu impish/main amd64 libkmod2 amd64 28-1ubuntu4 [45.0 kB] Get:78 http://ftpmaster.internal/ubuntu impish/main amd64 libmount1 amd64 2.36.1-8ubuntu1 [116 kB] Get:79 http://ftpmaster.internal/ubuntu impish/main amd64 libpam0g amd64 1.3.1-5ubuntu11 [58.4 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main amd64 mount amd64 2.36.1-8ubuntu1 [110 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main amd64 systemd amd64 248.3-1ubuntu7 [4402 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main amd64 libsystemd0 amd64 248.3-1ubuntu7 [306 kB] Get:83 http://ftpmaster.internal/ubuntu impish/main amd64 libapt-pkg6.0 amd64 2.3.9 [900 kB] Get:84 http://ftpmaster.internal/ubuntu impish/main amd64 gpgv amd64 2.2.20-1ubuntu4 [130 kB] Get:85 http://ftpmaster.internal/ubuntu impish/main amd64 apt amd64 2.3.9 [1382 kB] Get:86 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu11 [41.2 kB] Get:87 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-modules amd64 1.3.1-5ubuntu11 [272 kB] Get:88 http://ftpmaster.internal/ubuntu impish/main amd64 logsave amd64 1.46.3-1ubuntu3 [11.5 kB] Get:89 http://ftpmaster.internal/ubuntu impish/main amd64 libext2fs2 amd64 1.46.3-1ubuntu3 [210 kB] Get:90 http://ftpmaster.internal/ubuntu impish/main amd64 e2fsprogs amd64 1.46.3-1ubuntu3 [588 kB] Get:91 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3.9-minimal amd64 3.9.7-2build1 [784 kB] Get:92 http://ftpmaster.internal/ubuntu impish/main amd64 libexpat1 amd64 2.4.1-2 [90.1 kB] Get:93 http://ftpmaster.internal/ubuntu impish/main amd64 python3.9-minimal amd64 3.9.7-2build1 [2081 kB] Get:94 http://ftpmaster.internal/ubuntu impish/main amd64 python3-minimal amd64 3.9.4-1 [23.7 kB] Get:95 http://ftpmaster.internal/ubuntu impish/main amd64 media-types all 4.0.0 [22.2 kB] Get:96 http://ftpmaster.internal/ubuntu impish/main amd64 libmpdec3 amd64 2.5.1-2 [79.8 kB] Get:97 http://ftpmaster.internal/ubuntu impish/main amd64 readline-common all 8.1-2 [54.1 kB] Get:98 http://ftpmaster.internal/ubuntu impish/main amd64 libreadline8 amd64 8.1-2 [138 kB] Get:99 http://ftpmaster.internal/ubuntu impish/main amd64 libsqlite3-0 amd64 3.35.5-1 [601 kB] Get:100 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3.9-stdlib amd64 3.9.7-2build1 [1807 kB] Get:101 http://ftpmaster.internal/ubuntu impish/main amd64 python3.9 amd64 3.9.7-2build1 [433 kB] Get:102 http://ftpmaster.internal/ubuntu impish/main amd64 libpython3-stdlib amd64 3.9.4-1 [6984 B] Get:103 http://ftpmaster.internal/ubuntu impish/main amd64 python3 amd64 3.9.4-1 [22.2 kB] Get:104 http://ftpmaster.internal/ubuntu impish/main amd64 libpam-runtime all 1.3.1-5ubuntu11 [38.7 kB] Get:105 http://ftpmaster.internal/ubuntu impish/main amd64 libpcre2-8-0 amd64 10.37-0ubuntu2 [219 kB] Get:106 http://ftpmaster.internal/ubuntu impish/main amd64 libsmartcols1 amd64 2.36.1-8ubuntu1 [49.7 kB] Get:107 http://ftpmaster.internal/ubuntu impish/main amd64 passwd amd64 1:4.8.1-1ubuntu9 [813 kB] Get:108 http://ftpmaster.internal/ubuntu impish/main amd64 libprocps8 amd64 2:3.3.17-5ubuntu3 [35.9 kB] Get:109 http://ftpmaster.internal/ubuntu impish/main amd64 libss2 amd64 1.46.3-1ubuntu3 [12.3 kB] Get:110 http://ftpmaster.internal/ubuntu impish/main amd64 procps amd64 2:3.3.17-5ubuntu3 [378 kB] Get:111 http://ftpmaster.internal/ubuntu impish/main amd64 usrmerge all 25ubuntu1 [53.5 kB] Get:112 http://ftpmaster.internal/ubuntu impish/main amd64 openssl amd64 1.1.1l-1ubuntu1 [651 kB] Get:113 http://ftpmaster.internal/ubuntu impish/main amd64 xz-utils amd64 5.2.5-2 [82.0 kB] Get:114 http://ftpmaster.internal/ubuntu impish/main amd64 advancecomp amd64 2.1-2.1ubuntu1 [170 kB] Get:115 http://ftpmaster.internal/ubuntu impish/main amd64 libctf0 amd64 2.37-7ubuntu1 [103 kB] Get:116 http://ftpmaster.internal/ubuntu impish/main amd64 libctf-nobfd0 amd64 2.37-7ubuntu1 [106 kB] Get:117 http://ftpmaster.internal/ubuntu impish/main amd64 binutils-x86-64-linux-gnu amd64 2.37-7ubuntu1 [2315 kB] Get:118 http://ftpmaster.internal/ubuntu impish/main amd64 binutils amd64 2.37-7ubuntu1 [3190 B] Get:119 http://ftpmaster.internal/ubuntu impish/main amd64 libbinutils amd64 2.37-7ubuntu1 [654 kB] Get:120 http://ftpmaster.internal/ubuntu impish/main amd64 binutils-common amd64 2.37-7ubuntu1 [212 kB] Get:121 http://ftpmaster.internal/ubuntu impish/main amd64 libisl23 amd64 0.24-1 [668 kB] Get:122 http://ftpmaster.internal/ubuntu impish/main amd64 cpp-11 amd64 11.2.0-7ubuntu2 [50.6 MB] Get:123 http://ftpmaster.internal/ubuntu impish/main amd64 libgcc-11-dev amd64 11.2.0-7ubuntu2 [2526 kB] Get:124 http://ftpmaster.internal/ubuntu impish/main amd64 gcc-11 amd64 11.2.0-7ubuntu2 [59.3 MB] Get:125 http://ftpmaster.internal/ubuntu impish/main amd64 libstdc++-11-dev amd64 11.2.0-7ubuntu2 [2073 kB] Get:126 http://ftpmaster.internal/ubuntu impish/main amd64 g++-11 amd64 11.2.0-7ubuntu2 [55.2 MB] Get:127 http://ftpmaster.internal/ubuntu impish/main amd64 lto-disabled-list all 16 [12.5 kB] Get:128 http://ftpmaster.internal/ubuntu impish/main amd64 python3-psutil amd64 5.8.0-1 [153 kB] Get:129 http://ftpmaster.internal/ubuntu impish/main amd64 build-essential amd64 12.9ubuntu1 [4740 B] Get:130 http://ftpmaster.internal/ubuntu impish/universe amd64 g++-10 amd64 10.3.0-11ubuntu1 [10.6 MB] Get:131 http://ftpmaster.internal/ubuntu impish/universe amd64 gcc-10 amd64 10.3.0-11ubuntu1 [19.0 MB] Get:132 http://ftpmaster.internal/ubuntu impish/main amd64 libstdc++-10-dev amd64 10.3.0-11ubuntu1 [1863 kB] Get:133 http://ftpmaster.internal/ubuntu impish/main amd64 libgcc-10-dev amd64 10.3.0-11ubuntu1 [2490 kB] Get:134 http://ftpmaster.internal/ubuntu impish/universe amd64 cpp-10 amd64 10.3.0-11ubuntu1 [9343 kB] Get:135 http://ftpmaster.internal/ubuntu impish/main amd64 gcc-10-base amd64 10.3.0-11ubuntu1 [20.7 kB] Get:136 http://ftpmaster.internal/ubuntu impish/main amd64 libassuan0 amd64 2.5.5-1 [38.4 kB] Get:137 http://ftpmaster.internal/ubuntu impish/main amd64 pinentry-curses amd64 1.1.1-1 [32.0 kB] Get:138 http://ftpmaster.internal/ubuntu impish/main amd64 gpg amd64 2.2.20-1ubuntu4 [479 kB] Get:139 http://ftpmaster.internal/ubuntu impish/main amd64 gpgconf amd64 2.2.20-1ubuntu4 [91.1 kB] Get:140 http://ftpmaster.internal/ubuntu impish/main amd64 gpg-agent amd64 2.2.20-1ubuntu4 [191 kB] Get:141 http://ftpmaster.internal/ubuntu impish/main amd64 pkgbinarymangler all 148 [32.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 272 MB in 14s (19.7 MB/s) (Reading database ... 13130 files and directories currently installed.) 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Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (248.3-1ubuntu7) ... Processing triggers for libc-bin (2.34-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22118462 amd64 impish -c chroot:build-PACKAGEBUILD-22118462 --arch=amd64 --dist=impish --nolog -A altree_1.3.1-10build1.dsc Initiating build PACKAGEBUILD-22118462 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-158-generic #166-Ubuntu SMP Fri Sep 17 19:37:52 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-046.buildd +==============================================================================+ | altree 1.3.1-10build1 (amd64) Tue, 28 Sep 2021 22:11:01 +0000 | +==============================================================================+ Package: altree Version: 1.3.1-10build1 Source Version: 1.3.1-10build1 Distribution: impish Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22118462/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- altree_1.3.1-10build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/altree-alY0KN/altree-1.3.1' with '<>' I: NOTICE: Log filtering will replace 'build/altree-alY0KN' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-jbrUNx/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-jbrUNx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-jbrUNx/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-jbrUNx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-jbrUNx/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-jbrUNx/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (23.6 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: cpp-10 g++-10 gcc-10 gcc-10-base libgcc-10-dev libstdc++-10-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 654 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-jbrUNx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [654 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 654 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15067 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev, libtest-deep-perl, fig2dev Filtered Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev, libtest-deep-perl, fig2dev dpkg-deb: building package 'sbuild-build-depends-altree-dummy' in '/<>/resolver-jbrUNx/apt_archive/sbuild-build-depends-altree-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-altree-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-jbrUNx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-jbrUNx/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-jbrUNx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-jbrUNx/apt_archive ./ Sources [596 B] Get:5 copy:/<>/resolver-jbrUNx/apt_archive ./ Packages [677 B] Fetched 2236 B in 0s (99.0 kB/s) Reading package lists... Reading package lists... Install altree build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-10 libstdc++-10-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgsl-dev libgsl25 libgslcblas0 libharfbuzz0b libice6 libicu67 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 libmagic-mgc libmagic1 libmath-tamuanova-perl libmd0 libnetpbm10 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db netpbm po-debconf poppler-data preview-latex-style t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make xfig fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc libasprintf-dev libgettextpo-dev ghostscript-x groff liblapack-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java cups-common gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl libspreadsheet-parseexcel-perl texlive-latex-extra-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex Recommended packages: curl | wget | lynx inkscape dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs fonts-droid-fallback libltdl-dev libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa texlive-plain-generic ruby | ruby-interpreter tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base ghostscript groff-base intltool-debian latex-make libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdeflate0 libdw1 libelf1 libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgsl-dev libgsl25 libgslcblas0 libharfbuzz0b libice6 libicu67 libidn11 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 libmagic-mgc libmagic1 libmath-tamuanova-perl libmd0 libnetpbm10 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1 libpixman-1-0 libptexenc1 libsigsegv2 libsm6 libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db netpbm po-debconf poppler-data preview-latex-style sbuild-build-depends-altree-dummy t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 193 MB of archives. After this operation, 528 MB of additional disk space will be used. Get:1 copy:/<>/resolver-jbrUNx/apt_archive ./ sbuild-build-depends-altree-dummy 0.invalid.0 [758 B] Get:2 http://ftpmaster.internal/ubuntu impish/main amd64 bsdextrautils amd64 2.36.1-8ubuntu1 [75.4 kB] Get:3 http://ftpmaster.internal/ubuntu impish/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:4 http://ftpmaster.internal/ubuntu impish/main amd64 groff-base amd64 1.22.4-7 [956 kB] Get:5 http://ftpmaster.internal/ubuntu impish/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:6 http://ftpmaster.internal/ubuntu impish/main amd64 man-db amd64 2.9.4-2 [1154 kB] Get:7 http://ftpmaster.internal/ubuntu impish/main amd64 libsigsegv2 amd64 2.13-1ubuntu1 [14.2 kB] Get:8 http://ftpmaster.internal/ubuntu impish/main amd64 gawk amd64 1:5.1.0-1build1 [416 kB] Get:9 http://ftpmaster.internal/ubuntu impish/main amd64 poppler-data all 0.4.11-1 [2171 kB] Get:10 http://ftpmaster.internal/ubuntu impish/main amd64 ucf all 3.0043 [56.1 kB] Get:11 http://ftpmaster.internal/ubuntu impish/universe amd64 tex-common all 6.16 [33.0 kB] Get:12 http://ftpmaster.internal/ubuntu impish/main amd64 libmd0 amd64 1.0.3-3build1 [21.5 kB] Get:13 http://ftpmaster.internal/ubuntu impish/main amd64 libbsd0 amd64 0.11.3-1ubuntu2 [41.1 kB] Get:14 http://ftpmaster.internal/ubuntu impish/main amd64 libdbus-1-3 amd64 1.12.20-2ubuntu2 [189 kB] Get:15 http://ftpmaster.internal/ubuntu impish/main amd64 libelf1 amd64 0.185-1 [47.2 kB] Get:16 http://ftpmaster.internal/ubuntu impish/main amd64 libglib2.0-0 amd64 2.68.4-1build1 [1425 kB] Get:17 http://ftpmaster.internal/ubuntu impish/main amd64 libicu67 amd64 67.1-7ubuntu1 [10.1 MB] Get:18 http://ftpmaster.internal/ubuntu impish/main amd64 libxml2 amd64 2.9.12+dfsg-4 [761 kB] Get:19 http://ftpmaster.internal/ubuntu impish/main amd64 bash-completion all 1:2.11-2ubuntu1 [179 kB] Get:20 http://ftpmaster.internal/ubuntu impish/main amd64 libmagic-mgc amd64 1:5.39-3 [228 kB] Get:21 http://ftpmaster.internal/ubuntu impish/main amd64 libmagic1 amd64 1:5.39-3 [80.6 kB] Get:22 http://ftpmaster.internal/ubuntu impish/main amd64 file amd64 1:5.39-3 [23.7 kB] Get:23 http://ftpmaster.internal/ubuntu impish/main amd64 gettext-base amd64 0.21-4ubuntu3 [36.6 kB] Get:24 http://ftpmaster.internal/ubuntu impish/main amd64 libxau6 amd64 1:1.0.9-1build3 [7360 B] Get:25 http://ftpmaster.internal/ubuntu impish/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu3 [10.3 kB] Get:26 http://ftpmaster.internal/ubuntu impish/main amd64 libxcb1 amd64 1.14-3ubuntu1 [45.3 kB] Get:27 http://ftpmaster.internal/ubuntu impish/main amd64 libx11-data all 2:1.7.2-1 [123 kB] Get:28 http://ftpmaster.internal/ubuntu impish/main amd64 libx11-6 amd64 2:1.7.2-1 [664 kB] Get:29 http://ftpmaster.internal/ubuntu impish/main amd64 libxext6 amd64 2:1.3.4-0ubuntu3 [28.9 kB] Get:30 http://ftpmaster.internal/ubuntu impish/main amd64 m4 amd64 1.4.18-5ubuntu1 [199 kB] Get:31 http://ftpmaster.internal/ubuntu impish/main amd64 autoconf all 2.69-14 [293 kB] Get:32 http://ftpmaster.internal/ubuntu impish/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:33 http://ftpmaster.internal/ubuntu impish/main amd64 automake all 1:1.16.4-2 [557 kB] Get:34 http://ftpmaster.internal/ubuntu impish/main amd64 autopoint all 0.21-4ubuntu3 [422 kB] Get:35 http://ftpmaster.internal/ubuntu impish/main amd64 libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:36 http://ftpmaster.internal/ubuntu impish/main amd64 libtool all 2.4.6-15 [161 kB] Get:37 http://ftpmaster.internal/ubuntu impish/main amd64 dh-autoreconf all 20 [16.1 kB] Get:38 http://ftpmaster.internal/ubuntu impish/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:39 http://ftpmaster.internal/ubuntu impish/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:40 http://ftpmaster.internal/ubuntu impish/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:41 http://ftpmaster.internal/ubuntu impish/main amd64 dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:42 http://ftpmaster.internal/ubuntu impish/main amd64 libdw1 amd64 0.185-1 [225 kB] Get:43 http://ftpmaster.internal/ubuntu impish/main amd64 debugedit amd64 1:5.0-0ubuntu2 [47.9 kB] Get:44 http://ftpmaster.internal/ubuntu impish/main amd64 dwz amd64 0.14-1 [98.1 kB] Get:45 http://ftpmaster.internal/ubuntu impish/main amd64 gettext amd64 0.21-4ubuntu3 [824 kB] Get:46 http://ftpmaster.internal/ubuntu impish/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:47 http://ftpmaster.internal/ubuntu impish/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:48 http://ftpmaster.internal/ubuntu impish/main amd64 debhelper all 13.3.4ubuntu2 [921 kB] Get:49 http://ftpmaster.internal/ubuntu impish/main amd64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:50 http://ftpmaster.internal/ubuntu impish/main amd64 libgs9-common all 9.54.0~dfsg1-0ubuntu2 [747 kB] Get:51 http://ftpmaster.internal/ubuntu impish/main amd64 libavahi-common-data amd64 0.8-5ubuntu4 [24.2 kB] Get:52 http://ftpmaster.internal/ubuntu impish/main amd64 libavahi-common3 amd64 0.8-5ubuntu4 [23.8 kB] Get:53 http://ftpmaster.internal/ubuntu impish/main amd64 libavahi-client3 amd64 0.8-5ubuntu4 [28.0 kB] Get:54 http://ftpmaster.internal/ubuntu impish/main amd64 libcups2 amd64 2.3.3op2-7ubuntu2 [261 kB] Get:55 http://ftpmaster.internal/ubuntu impish/main amd64 libbrotli1 amd64 1.0.9-2build2 [274 kB] Get:56 http://ftpmaster.internal/ubuntu impish/main amd64 libfreetype6 amd64 2.10.4+dfsg-1build1 [348 kB] Get:57 http://ftpmaster.internal/ubuntu impish/main amd64 fontconfig-config all 2.13.1-4.2ubuntu3 [28.2 kB] Get:58 http://ftpmaster.internal/ubuntu impish/main amd64 libfontconfig1 amd64 2.13.1-4.2ubuntu3 [116 kB] Get:59 http://ftpmaster.internal/ubuntu impish/main amd64 libidn11 amd64 1.33-3 [46.1 kB] Get:60 http://ftpmaster.internal/ubuntu impish/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] Get:61 http://ftpmaster.internal/ubuntu impish/main amd64 libjbig2dec0 amd64 0.19-3 [61.8 kB] Get:62 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg-turbo8 amd64 2.0.6-0ubuntu2 [117 kB] Get:63 http://ftpmaster.internal/ubuntu impish/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:64 http://ftpmaster.internal/ubuntu impish/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu5 [141 kB] Get:65 http://ftpmaster.internal/ubuntu impish/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:66 http://ftpmaster.internal/ubuntu impish/main amd64 libdeflate0 amd64 1.7-2ubuntu2 [56.3 kB] Get:67 http://ftpmaster.internal/ubuntu impish/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:68 http://ftpmaster.internal/ubuntu impish/main amd64 libwebp6 amd64 0.6.1-2.1 [183 kB] Get:69 http://ftpmaster.internal/ubuntu impish/main amd64 libtiff5 amd64 4.3.0-1 [168 kB] Get:70 http://ftpmaster.internal/ubuntu impish/main amd64 libgs9 amd64 9.54.0~dfsg1-0ubuntu2 [4688 kB] Get:71 http://ftpmaster.internal/ubuntu impish/main amd64 ghostscript amd64 9.54.0~dfsg1-0ubuntu2 [49.5 kB] Get:72 http://ftpmaster.internal/ubuntu impish/universe amd64 libnetpbm10 amd64 2:10.0-15.4 [59.1 kB] Get:73 http://ftpmaster.internal/ubuntu impish/universe amd64 netpbm amd64 2:10.0-15.4 [1007 kB] Get:74 http://ftpmaster.internal/ubuntu impish/main amd64 x11-common all 1:7.7+22ubuntu1 [22.3 kB] Get:75 http://ftpmaster.internal/ubuntu impish/universe amd64 fig2dev amd64 1:3.2.8-3 [632 kB] Get:76 http://ftpmaster.internal/ubuntu impish/universe amd64 fonts-lmodern all 2.004.5-6.1 [4532 kB] Get:77 http://ftpmaster.internal/ubuntu impish/universe amd64 latex-make all 2.4.2-1 [719 kB] Get:78 http://ftpmaster.internal/ubuntu impish/universe amd64 libapache-pom-java all 18-1 [4720 B] Get:79 http://ftpmaster.internal/ubuntu impish/main amd64 libblas3 amd64 3.9.0-3ubuntu2 [199 kB] Get:80 http://ftpmaster.internal/ubuntu impish/main amd64 libblas-dev amd64 3.9.0-3ubuntu2 [147 kB] Get:81 http://ftpmaster.internal/ubuntu impish/main amd64 libpixman-1-0 amd64 0.40.0-1build2 [236 kB] Get:82 http://ftpmaster.internal/ubuntu impish/main amd64 libxcb-render0 amd64 1.14-3ubuntu1 [14.8 kB] 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[345 kB] Get:93 http://ftpmaster.internal/ubuntu impish/main amd64 libice6 amd64 2:1.0.10-1 [40.2 kB] Get:94 http://ftpmaster.internal/ubuntu impish/main amd64 libkpathsea6 amd64 2020.20200327.54578-7 [57.8 kB] Get:95 http://ftpmaster.internal/ubuntu impish/universe amd64 libtamuanova-0.2 amd64 0.2-4build2 [8520 B] Get:96 http://ftpmaster.internal/ubuntu impish/universe amd64 libmath-tamuanova-perl amd64 1.0.2-2ubuntu9 [12.9 kB] Get:97 http://ftpmaster.internal/ubuntu impish/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:98 http://ftpmaster.internal/ubuntu impish/main amd64 libptexenc1 amd64 2020.20200327.54578-7 [35.9 kB] Get:99 http://ftpmaster.internal/ubuntu impish/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:100 http://ftpmaster.internal/ubuntu impish/main amd64 libsynctex2 amd64 2020.20200327.54578-7 [55.3 kB] Get:101 http://ftpmaster.internal/ubuntu impish/universe amd64 libteckit0 amd64 2.5.10+ds1-3 [328 kB] Get:102 http://ftpmaster.internal/ubuntu impish/universe amd64 libtest-deep-perl all 1.130-1 [41.5 kB] Get:103 http://ftpmaster.internal/ubuntu impish/main amd64 libtexlua53 amd64 2020.20200327.54578-7 [111 kB] Get:104 http://ftpmaster.internal/ubuntu impish/main amd64 libtexluajit2 amd64 2020.20200327.54578-7 [249 kB] Get:105 http://ftpmaster.internal/ubuntu impish/main amd64 libxt6 amd64 1:1.2.0-1 [160 kB] Get:106 http://ftpmaster.internal/ubuntu impish/main amd64 libxmu6 amd64 2:1.1.3-0ubuntu1 [45.8 kB] Get:107 http://ftpmaster.internal/ubuntu impish/main amd64 libxpm4 amd64 1:3.5.12-1 [34.0 kB] Get:108 http://ftpmaster.internal/ubuntu impish/main amd64 libxaw7 amd64 2:1.0.13-1.1 [174 kB] Get:109 http://ftpmaster.internal/ubuntu impish/main amd64 libxi6 amd64 2:1.7.10-1build2 [29.7 kB] Get:110 http://ftpmaster.internal/ubuntu impish/universe amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [27.0 kB] Get:111 http://ftpmaster.internal/ubuntu impish/universe amd64 preview-latex-style all 12.2-1ubuntu1 [185 kB] Get:112 http://ftpmaster.internal/ubuntu impish/main amd64 t1utils amd64 1.41-4 [56.0 kB] Get:113 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-binaries amd64 2020.20200327.54578-7 [9919 kB] Get:114 http://ftpmaster.internal/ubuntu impish/main amd64 xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:115 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-base all 2020.20210202-3 [20.7 MB] Get:116 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-fonts-recommended all 2020.20210202-3 [4973 kB] Get:117 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-lang-french all 2020.20210202-2 [67.0 MB] Get:118 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-latex-base all 2020.20210202-3 [1089 kB] Get:119 http://ftpmaster.internal/ubuntu impish/universe amd64 libfontbox-java all 1:1.8.16-2 [207 kB] Get:120 http://ftpmaster.internal/ubuntu impish/universe amd64 libpdfbox-java all 1:1.8.16-2 [5199 kB] Get:121 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get:122 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-pictures all 2020.20210202-3 [6710 kB] Get:123 http://ftpmaster.internal/ubuntu impish/universe amd64 texlive-latex-extra all 2020.20210202-3 [13.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 193 MB in 13s (15.1 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 15067 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8ubuntu1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../5-libsigsegv2_2.13-1ubuntu1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1ubuntu1) ... 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Setting up bsdextrautils (2.36.1-8ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7ubuntu1) ... Setting up libgslcblas0:amd64 (2.6+dfsg-2) ... Setting up libtest-deep-perl (1.130-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:amd64 (2.6+dfsg-2) ... Setting up gawk (1:5.1.0-1build1) ... Setting up libtexlua53:amd64 (2020.20200327.54578-7) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.68.4-1build1) ... No schema files found: doing nothing. Setting up libijs-0.35:amd64 (0.35-15) ... Setting up libtexluajit2:amd64 (2020.20200327.54578-7) ... Setting up libdebhelper-perl (13.3.4ubuntu2) ... Setting up libbrotli1:amd64 (1.0.9-2build2) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+22ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-2ubuntu2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.39-3) ... Setting up libnetpbm10 (2:10.0-15.4) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjbig0:amd64 (2.1-3.1build1) ... Setting up poppler-data (0.4.11-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libfreetype6:amd64 (2.10.4+dfsg-1build1) ... Setting up libx11-data (2:1.7.2-1) ... Setting up libjbig2dec0:amd64 (0.19-3) ... Setting up libidn11:amd64 (1.33-3) ... Setting up libteckit0:amd64 (2.5.10+ds1-3) ... Setting up bash-completion (1:2.11-2ubuntu1) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5ubuntu4) ... Setting up libdbus-1-3:amd64 (1.12.20-2ubuntu2) ... Setting up t1utils (1.41-4) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libwebp6:amd64 (0.6.1-2.1) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:amd64 (2.0.6-0ubuntu2) ... Setting up libkpathsea6:amd64 (2020.20200327.54578-7) ... Setting up autoconf (2.69-14) ... Setting up libtamuanova-0.2 (0.2-4build2) ... Setting up libmd0:amd64 (1.0.3-3build1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up fonts-lmodern (2.004.5-6.1) ... Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu1) ... Setting up libbsd0:amd64 (0.11.3-1ubuntu2) ... Setting up libelf1:amd64 (0.185-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-4) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up libblas-dev:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsynctex2:amd64 (2020.20200327.54578-7) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgs9-common (9.54.0~dfsg1-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libdw1:amd64 (0.185-1) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu3) ... Setting up libxcb1:amd64 (1.14-3ubuntu1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libgsl-dev (2.6+dfsg-2) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu3) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:amd64 (0.8-5ubuntu4) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu1) ... Setting up libpaper-utils (1.1.28) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libmath-tamuanova-perl (1.0.2-2ubuntu9) ... Setting up libptexenc1:amd64 (2020.20200327.54578-7) ... Setting up latex-make (2.4.2-1) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up libx11-6:amd64 (2:1.7.2-1) ... Setting up libtiff5:amd64 (4.3.0-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2ubuntu3) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5ubuntu4) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1build2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up preview-latex-style (12.2-1ubuntu1) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcairo2:amd64 (1.16.0-5ubuntu1) ... Setting up netpbm (2:10.0-15.4) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up libcups2:amd64 (2.3.3op2-7ubuntu2) ... Setting up libxmu6:amd64 (2:1.1.3-0ubuntu1) ... Setting up libgs9:amd64 (9.54.0~dfsg1-0ubuntu2) ... Setting up libxi6:amd64 (2:1.7.10-1build2) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up libxaw7:amd64 (2:1.0.13-1.1) ... Setting up ghostscript (9.54.0~dfsg1-0ubuntu2) ... Setting up fig2dev (1:3.2.8-3) ... Setting up texlive-binaries (2020.20200327.54578-7) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-lang-french (2020.20210202-2) ... Setting up texlive-latex-base (2020.20210202-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up texlive-fonts-recommended (2020.20210202-3) ... Setting up texlive-latex-extra (2020.20210202-3) ... Setting up sbuild-build-depends-altree-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu2) ... Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-158-generic amd64 (x86_64) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu13 g++-10_10.3.0-11ubuntu1 g++-11_11.2.0-7ubuntu2 gcc-10_10.3.0-11ubuntu1 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu2 libstdc++-10-dev_10.3.0-11ubuntu1 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-16.16 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.9 autoconf_2.69-14 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_11.1ubuntu3 base-passwd_3.5.51 bash_5.1-3ubuntu1 bash-completion_1:2.11-2ubuntu1 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-x86-64-linux-gnu_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu1 bsdutils_1:2.36.1-8ubuntu1 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libncursesw6_6.2+20201114-2build1 libnetpbm10_2:10.0-15.4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libopenjp2-7_2.3.1-1ubuntu5 libp11-kit0_0.23.22-1build1 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpaper-utils_1.1.28 libpaper1_1.1.28 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build3 libpdfbox-java_1:1.8.16-2 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1build2 libpng16-16_1.6.37-3build3 libprocps8_2:3.3.17-5ubuntu3 libptexenc1_2020.20200327.54578-7 libpython3-stdlib_3.9.4-1 libpython3.9-minimal_3.9.7-2build1 libpython3.9-stdlib_3.9.7-2build1 libquadmath0_11.2.0-7ubuntu2 libreadline8_8.1-2 libseccomp2_2.5.1-1ubuntu1 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsepol1_3.1-1ubuntu1 libsigsegv2_2.13-1ubuntu1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-8ubuntu1 libsqlite3-0_3.35.5-1 libss2_1.46.3-1ubuntu3 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libxrender1_1:0.9.10-1build2 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2 libzstd1_1.4.8+dfsg-2.1 libzzip-0-13_0.13.72+dfsg.1-1.1 linux-libc-dev_5.13.0-16.16 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu2 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.36.1-8ubuntu1 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 netpbm_2:10.0-15.4 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 poppler-data_0.4.11-1 preview-latex-style_12.2-1ubuntu1 procps_2:3.3.17-5ubuntu3 python3_3.9.4-1 python3-minimal_3.9.4-1 python3-psutil_5.8.0-1 python3.9_3.9.7-2build1 python3.9-minimal_3.9.7-2build1 readline-common_8.1-2 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-altree-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 systemd_248.3-1ubuntu7 systemd-sysv_248.3-1ubuntu7 systemd-timesyncd_248.3-1ubuntu7 sysvinit-utils_2.96-7ubuntu1 t1utils_1.41-4 tar_1.34+dfsg-1build1 tex-common_6.16 texlive-base_2020.20210202-3 texlive-binaries_2020.20200327.54578-7 texlive-fonts-recommended_2020.20210202-3 texlive-lang-french_2020.20210202-2 texlive-latex-base_2020.20210202-3 texlive-latex-extra_2020.20210202-3 texlive-latex-recommended_2020.20210202-3 texlive-pictures_2020.20210202-3 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu1 x11-common_1:7.7+22ubuntu1 xdg-utils_1.1.3-2ubuntu2 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Nov 9 12:35:12 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./altree_1.3.1-10build1.dsc dpkg-source: info: extracting altree in /<> dpkg-source: info: unpacking altree_1.3.1.orig.tar.gz dpkg-source: info: unpacking altree_1.3.1-10build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying from-upstream-no-nested-functions.patch dpkg-source: info: applying no-quicksort.patch dpkg-source: info: applying blas.patch dpkg-source: info: applying figlatex.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22118462 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22118462 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22118462 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage.pl: info: source package altree dpkg-buildpackage.pl: info: source version 1.3.1-10build1 dpkg-buildpackage.pl: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage.pl: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' /usr/bin/make -C Documentation distclean make[2]: Entering directory '/<>/Documentation' make[2]: Nothing to be done for 'distclean'. make[2]: Leaving directory '/<>/Documentation' dh_auto_clean make[1]: Leaving directory '/<>' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro" Checking if your kit is complete... Looks good MakeMaker (v7.44) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules override_dh_auto_build make[1]: Entering directory '/<>' /usr/bin/make -C Documentation pdf make[2]: Entering directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory '/<>/Documentation' make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'. make[3]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121. Package texdepends Warning: No 'fig//overview.pdftex' file (texdepends) using 1 for graphic dimensions on input line 124. Package texdepends Warning: Figure 'fig//overview.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 124. LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143. Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146. Package texdepends Warning: No 'fig//altree-q.pdftex' file (texdepends) using 1 for graphic dimensions on input line 150. Package texdepends Warning: Figure 'fig//altree-q.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 150. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] LaTeX Warning: Reference `help' on page 13 undefined on input line 564. Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632. LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633. Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] LaTeX Warning: Reference `help' on page 16 undefined on input line 701. Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846. LaTeX Warning: File `option_b.fig' not found on input line 852. Package texdepends Warning: No 'fig//option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig//option_b_1.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. LaTeX Warning: File `option_b.fig' not found on input line 853. Package texdepends Warning: No 'fig//option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig//option_b_2.fig' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (9.75981pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Package texdepends Warning: No 'fig//create_file_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1009. Package texdepends Warning: Figure 'fig//create_file_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1009. Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Package texdepends Warning: No 'fig//create_file_phy.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1043. Package texdepends Warning: Figure 'fig//create_file_phy.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1043. Package texdepends Warning: No 'fig//association_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1104. Package texdepends Warning: Figure 'fig//association_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1104. Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig//localisation_paup.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1130. Package texdepends Warning: Figure 'fig//localisation_paup.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1130. Package texdepends Warning: No 'fig//association_phylip.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1168. Package texdepends Warning: Figure 'fig//association_phylip.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1168. Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Package texdepends Warning: No 'fig//association_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1217. Package texdepends Warning: Figure 'fig//association_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1217. Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package texdepends Warning: No 'fig//localisation_paml.pdftex' file (texdepends) using 1 for graphic dimensions on input line 1252. Package texdepends Warning: Figure 'fig//localisation_paml.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 1252. Chapter 7. Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[3]: Entering directory '/<>/Documentation' ======> building fig/option_b.subfig.mk <====== make[3]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[3]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=2 manual.pdf make[4]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2020/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/overview.pdftex <====== ======> building fig/overview.pdftex_t <====== ======> building fig/altree-q.pdftex <====== ======> building fig/altree-q.pdftex_t <====== ======> building fig/option_b_1.fig <====== ======> building fig/option_b_2.fig <====== ======> building fig/create_file_paup.pdftex <====== ======> building fig/create_file_paup.pdftex_t <====== ======> building fig/create_file_phy.pdftex <====== ======> building fig/create_file_phy.pdftex_t <====== ======> building fig/association_paup.pdftex <====== ======> building fig/association_paup.pdftex_t <====== ======> building fig/localisation_paup.pdftex <====== ======> building fig/localisation_paup.pdftex_t <====== ======> building fig/association_phylip.pdftex <====== ======> building fig/association_phylip.pdftex_t <====== ======> building fig/association_paml.pdftex <====== ======> building fig/association_paml.pdftex_t <====== ======> building fig/localisation_paml.pdftex <====== ======> building fig/localisation_paml.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143. Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146. Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146. LaTeX Warning: `h' float specifier changed to `ht'. Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180. Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197. Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197. Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198. Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199. Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200. Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278. Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281. Underfull \hbox (badness 1142) in paragraph at lines 281--284 []\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail- Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284. Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288. Underfull \hbox (badness 2486) in paragraph at lines 284--290 []\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634. Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830. Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830. Package texdepends Warning: No 'fig//option_b_1.pdftex' file (texdepends) using 1 for graphic dimensions on input line 852. Package texdepends Warning: Figure 'fig//option_b_1.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 852. Package texdepends Warning: No 'fig//option_b_2.pdftex' file (texdepends) using 1 for graphic dimensions on input line 853. Package texdepends Warning: Figure 'fig//option_b_2.pdftex_t' needed (texdepends) Skipping it this time (the last one however) (texdepends) on input line 853. Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921. Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941. Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Package natbib Warning: Citation `Guindon03' on page 26 undefined on input line 1181. Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho Package texdepends Warning: Figure(s) missing. Check dependencies again. Package natbib Warning: There were undefined citations. Package natbib Warning: Citation(s) may have changed. (natbib) Rerun to get citations correct. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=3 manual.pdf make[6]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2020/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/option_b_1.pdftex <====== ======> building fig/option_b_1.pdftex_t <====== ======> building fig/option_b_2.pdftex <====== ======> building fig/option_b_2.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[7]: Entering directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 []\T1/ptm/m/n/10.95 Z Yang. Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[7]: Entering directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[7]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') ******************************************** /usr/bin/make LU_REC_LEVEL=4 manual.pdf make[8]: Entering directory '/<>/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2020/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34. Package texdepends Warning: Diverting empty macro 'Ginclude@eps' (texdepends) Probably a bug in texdepends.sty. Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87. Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87. Chapter 1. LaTeX Warning: `h' float specifier changed to `ht'. Underfull \hbox (badness 1454) in paragraph at lines 196--201 []\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10. Chapter 2. Underfull \hbox (badness 10000) in paragraph at lines 314--315 Chapter 3. Underfull \hbox (badness 10000) in paragraph at lines 369--369 []|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370 [] Underfull \hbox (badness 10000) in paragraph at lines 396--397 Underfull \hbox (badness 10000) in paragraph at lines 400--401 Underfull \hbox (badness 10000) in paragraph at lines 416--417 Underfull \hbox (badness 1112) in paragraph at lines 505--507 []\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes Chapter 4. Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553 [] Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605 \T1/ptm/m/n/10.95 Examples: $[]$ $[]$ Chapter 5. Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --data-qual|-q Underfull \hbox (badness 1281) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 remove the out-group se-quence for the Underfull \hbox (badness 5681) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --tree-building-program|-p Underfull \hbox (badness 10000) in paragraph at lines 697--697 []|\T1/pcr/m/n/10.95 --s-site-characters Underfull \hbox (badness 1565) in paragraph at lines 697--697 []|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698 [] Underfull \hbox (badness 10000) in paragraph at lines 735--738 Underfull \hbox (badness 1622) in paragraph at lines 747--755 \T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes Overfull \hbox (15.23479pt too wide) in paragraph at lines 850--865 [][] Chapter 6. Underfull \hbox (badness 5519) in paragraph at lines 968--971 []\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in- Underfull \hbox (badness 10000) in paragraph at lines 1024--1026 []\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put Underfull \hbox (badness 10000) in paragraph at lines 1125--1127 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Underfull \hbox (badness 2662) in paragraph at lines 1188--1195 \T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti Underfull \hbox (badness 10000) in paragraph at lines 1247--1249 []\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 58--61 /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory '/<>/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory '/<>/Documentation' make[10]: 'manual.pdf' is up to date. make[10]: Leaving directory '/<>/Documentation' make[9]: Leaving directory '/<>/Documentation' make[8]: Leaving directory '/<>/Documentation' make[7]: Leaving directory '/<>/Documentation' make[6]: Leaving directory '/<>/Documentation' make[5]: Leaving directory '/<>/Documentation' make[4]: Leaving directory '/<>/Documentation' make[3]: Leaving directory '/<>/Documentation' make[2]: Leaving directory '/<>/Documentation' dh_auto_build make -j4 make[2]: Entering directory '/<>' make[3]: Entering directory '/<>/CUtils' make -C c_sources make[4]: Entering directory '/<>/CUtils/c_sources' x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" chisq.c cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" double_permutation.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" fisher.c cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) Running Mkbootstrap for CUtils () x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" mt19937ar.c chmod 644 "CUtils.bs" "/usr/bin/perl" "/usr/share/perl/5.32.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.32/ExtUtils/typemap' CUtils.xs > CUtils.xsc x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" myrand.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" resampling.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" rhyper.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" stats.c Please specify prototyping behavior for CUtils.xs (see perlxs manual) mv CUtils.xsc CUtils.c "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 x86_64-linux-gnu-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" CUtils.c x86_64-linux-gnu-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.32/CORE" z.c z.c:12:13: warning: ‘sccsfid’ defined but not used [-Wunused-variable] 12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; | ^~~~~~~ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[4]: Leaving directory '/<>/CUtils/c_sources' make[4]: Entering directory '/<>/CUtils/c_sources' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/CUtils/c_sources' In file included from CUtils.xs:5: ppport.h:237: warning: "PERL_UNUSED_DECL" redefined 237 | # define PERL_UNUSED_DECL | In file included from CUtils.xs:2: /usr/lib/x86_64-linux-gnu/perl/5.32/CORE/perl.h:435: note: this is the location of the previous definition 435 | # define PERL_UNUSED_DECL __attribute__unused__ | CUtils.xs: In function ‘XS_ALTree__CUtils_RHyper’: CUtils.xs:69:16: warning: implicit declaration of function ‘rhyper’ [-Wimplicit-function-declaration] 69 | RETVAL=rhyper(n1, n2, k); | ^~~~~~ rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lblas \ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so Manifying 1 pod document make[3]: Leaving directory '/<>/CUtils' cp progs/altree blib/script/altree "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree cp progs/altree-add-S blib/script/altree-add-S cp progs/altree-convert blib/script/altree-convert "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert Manifying 3 pod documents make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 test TEST_VERBOSE=1 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/<>/CUtils' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' make[3]: Entering directory '/<>/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory '/<>/CUtils/c_sources' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... 1..1 ok 1 - use ALTree::CUtils; ok t/double_permutation.t .. 1..3 ok 1 - use ALTree::CUtils; ok 2 - undef when bad args ok 3 - double_permutation ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.05 usr 0.02 sys + 0.27 cusr 0.05 csys = 0.39 CPU) Result: PASS make[2]: Leaving directory '/<>/CUtils' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. 1..1 ok 1 - use ALTree::Import; ok All tests successful. Files=1, Tests=1, 1 wallclock secs ( 0.03 usr 0.02 sys + 0.20 cusr 0.02 csys = 0.27 CPU) Result: PASS make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/CUtils' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644 make[3]: Entering directory '/<>/CUtils/c_sources' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/CUtils/c_sources' Manifying 1 pod document make[2]: Leaving directory '/<>/CUtils' Manifying 3 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/auto/ALTree/CUtils/CUtils.so Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Site.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/CUtils.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Foret.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SiteSensPerForet.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Input.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Import.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Tree.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Utils.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SiteSens.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Chi2.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Sens.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/to_rewrite.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SiteSensPerTree.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SiteCollection.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Base.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SitePerForet.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Node.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/SitePerTree.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/ALTree/Nanova.pm Installing /<>/debian/tmp/usr/lib/x86_64-linux-gnu/perl5/5.32/auto/ALTree/CUtils/autosplit.ix Installing /<>/debian/tmp/usr/share/man/man1/altree-add-S.1p Installing /<>/debian/tmp/usr/share/man/man1/altree.1p Installing /<>/debian/tmp/usr/share/man/man1/altree-convert.1p Installing /<>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm Installing /<>/debian/tmp/usr/bin/altree-add-S Installing /<>/debian/tmp/usr/bin/altree Installing /<>/debian/tmp/usr/bin/altree-convert make[1]: Leaving directory '/<>' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms dh_missing dh_dwz -a dh_strip -a e46ed2857f6ac55195edf8d846126724e2c101f3 dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/x86_64-linux-gnu/perl5/5.32/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing altree-examples (in debian/altree-examples); do_strip: , oemstrip: pkgstriptranslations: processing altree (in debian/altree); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/altree-examples/DEBIAN/control, package altree-examples, directory debian/altree-examples INFO: pkgstripfiles: waiting for lock (altree-examples) ... pkgstripfiles: processing control file: debian/altree/DEBIAN/control, package altree, directory debian/altree pkgstripfiles: Truncating usr/share/doc/altree/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package altree ... pkgstripfiles: No PNG files. dpkg-deb: building package 'altree' in '../altree_1.3.1-10build1_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/altree-examples/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package altree-examples ... pkgstripfiles: No PNG files. dpkg-deb: building package 'altree-examples' in '../altree-examples_1.3.1-10build1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../altree_1.3.1-10build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage.pl: info: binary-only upload (no source included) === USAGE-SUMMARY BEGIN === SUMMARY: host: lgw01-amd64-046; CPUs: 4/4; CPU avg: 37%; CPU max: 96%; base memory: 0.2 GB; peak memory: 0.3 GB; total memory: 7.8 GB SUMMARY: swap peak/total: 0.0/4.0 GB; disk start/end/total: 3.8/3.8/58.0 GB; disk delta: 0.0 GB === USAGE-SUMMARY END === -------------------------------------------------------------------------------- Build finished at 2021-09-28T22:13:26Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ altree_1.3.1-10build1_amd64.changes: ------------------------------------ Format: 1.8 Date: Mon, 09 Nov 2020 12:51:46 +0100 Source: altree Binary: altree altree-examples Built-For-Profiles: noudeb Architecture: all amd64 Version: 1.3.1-10build1 Distribution: impish Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: altree - program to perform phylogeny-based association and localization a altree-examples - example files for ALTree Changes: altree (1.3.1-10build1) hirsute; urgency=medium . * No-change rebuild for the perl update. Checksums-Sha1: 142d321510166e77c0233cf2ecd55d46a0eda485 330218 altree-examples_1.3.1-10build1_all.deb 49ba1ab2c53c8bd60c3a272c18cb96024f192f3e 9471 altree_1.3.1-10build1_amd64.buildinfo 15d5bd26004c49215970427a679589114e8bc94f 333632 altree_1.3.1-10build1_amd64.deb Checksums-Sha256: 081fdd6aabf7351d646f1cfe7f4305ed9590ca5b2a1aa819723fe195462f9224 330218 altree-examples_1.3.1-10build1_all.deb 385de685c71728838dd648dce610dd130440786318cc93b3f6f4f9a49502b2de 9471 altree_1.3.1-10build1_amd64.buildinfo 01e8cf228a253807fa8cbaca739940855bb6304c56e41ac8f6fa37aa597efcfc 333632 altree_1.3.1-10build1_amd64.deb Files: c304fcc9378437c752aceba0495b0d13 330218 science optional altree-examples_1.3.1-10build1_all.deb 46f58388649a6326dcabdc77f5fff01a 9471 science optional altree_1.3.1-10build1_amd64.buildinfo 82ad3c5ffb863db798d88433397fd9bf 333632 science optional altree_1.3.1-10build1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: altree Binary: altree altree-examples Architecture: all amd64 Version: 1.3.1-10build1 Checksums-Md5: c304fcc9378437c752aceba0495b0d13 330218 altree-examples_1.3.1-10build1_all.deb 82ad3c5ffb863db798d88433397fd9bf 333632 altree_1.3.1-10build1_amd64.deb Checksums-Sha1: 142d321510166e77c0233cf2ecd55d46a0eda485 330218 altree-examples_1.3.1-10build1_all.deb 15d5bd26004c49215970427a679589114e8bc94f 333632 altree_1.3.1-10build1_amd64.deb Checksums-Sha256: 081fdd6aabf7351d646f1cfe7f4305ed9590ca5b2a1aa819723fe195462f9224 330218 altree-examples_1.3.1-10build1_all.deb 01e8cf228a253807fa8cbaca739940855bb6304c56e41ac8f6fa37aa597efcfc 333632 altree_1.3.1-10build1_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Tue, 28 Sep 2021 22:13:26 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-14), automake 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6.2+20201114-2build1), netpbm (= 2:10.0-15.4), patch (= 2.7.6-7), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), poppler-data (= 0.4.11-1), preview-latex-style (= 12.2-1ubuntu1), python3 (= 3.9.4-1), python3-minimal (= 3.9.4-1), python3-psutil (= 5.8.0-1), python3.9 (= 3.9.7-2build1), python3.9-minimal (= 3.9.7-2build1), readline-common (= 8.1-2), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7ubuntu1), t1utils (= 1.41-4), tar (= 1.34+dfsg-1build1), tex-common (= 6.16), texlive-base (= 2020.20210202-3), texlive-binaries (= 2020.20200327.54578-7), texlive-fonts-recommended (= 2020.20210202-3), texlive-lang-french (= 2020.20210202-2), texlive-latex-base (= 2020.20210202-3), texlive-latex-extra (= 2020.20210202-3), texlive-latex-recommended (= 2020.20210202-3), texlive-pictures (= 2020.20210202-3), tzdata (= 2021a-1ubuntu1), ucf (= 3.0043), util-linux (= 2.36.1-8ubuntu1), x11-common (= 1:7.7+22ubuntu1), xdg-utils (= 1.1.3-2ubuntu2), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="noautodbgsym parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604922706" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ altree-examples_1.3.1-10build1_all.deb -------------------------------------- new Debian package, version 2.0. size 330218 bytes: control archive=4245 bytes. 816 bytes, 19 lines control 18464 bytes, 169 lines md5sums Package: altree-examples Source: altree Version: 1.3.1-10build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 581 Recommends: altree (= 1.3.1-10build1) Section: science Priority: optional Homepage: https://gitlab.inria.fr/NGS/ALTree Description: example files for ALTree ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. . This package contains the example files for the ALTree package discussed in its PDF manual. drwxr-xr-x root/root 0 2020-11-09 11:51 ./ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/share/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/share/doc/altree-examples/ -rw-r--r-- root/root 1553 2020-11-09 11:51 ./usr/share/doc/altree-examples/changelog.Debian.gz -rw-r--r-- root/root 1223 2020-06-22 11:32 ./usr/share/doc/altree-examples/copyright -rw-r--r-- root/root 1556 2020-06-22 11:32 ./usr/share/doc/altree-examples/run-unit-test.gz drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/share/doc/altree/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/share/doc/altree/examples/ drwxr-xr-x root/root 0 2013-12-13 22:15 ./usr/share/doc/altree/examples/create_file/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/share/doc/altree/examples/create_file/paup_file/ -rw-r--r-- root/root 833 2012-10-28 20:50 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perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. drwxr-xr-x root/root 0 2020-11-09 11:51 ./ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/bin/ -rwxr-xr-x root/root 55855 2020-11-09 11:51 ./usr/bin/altree -rwxr-xr-x root/root 15365 2020-11-09 11:51 ./usr/bin/altree-add-S -rwxr-xr-x root/root 22801 2020-11-09 11:51 ./usr/bin/altree-convert drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/lib/x86_64-linux-gnu/perl5/ drwxr-xr-x root/root 0 2020-11-09 11:51 ./usr/lib/x86_64-linux-gnu/perl5/5.32/ drwxr-xr-x root/root 0 2020-11-09 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 31 Distribution: impish Host Architecture: amd64 Install-Time: 112 Job: altree_1.3.1-10build1.dsc Machine Architecture: amd64 Package: altree Package-Time: 145 Source-Version: 1.3.1-10build1 Space: n/a Status: successful Version: 1.3.1-10build1 -------------------------------------------------------------------------------- Finished at 2021-09-28T22:13:26Z Build needed 00:02:25, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=impish --arch=amd64 PACKAGEBUILD-22118462 Scanning for processes to kill in build 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