https://launchpad.net/ubuntu/+archive/test-rebuild-20181222-test/+build/16173495 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-060 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:53 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_167 python-lpbuildd_167 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 24 Feb 10:19:49 ntpdate[1832]: adjust time server 10.211.37.1 offset 0.000071 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16173495 --image-type chroot /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-16173495 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16173495 Starting target for build PACKAGEBUILD-16173495 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16173495 'deb http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic main' 'deb http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic main' 'deb http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic main' 'deb http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic main' 'deb http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic main' 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-16173495 RUN: /usr/share/launchpad-buildd/slavebin/in-target add-trusted-keys --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16173495 Adding trusted keys to build-PACKAGEBUILD-16173495 Warning: apt-key output should not be parsed (stdout is not a terminal) OK Warning: apt-key output should not be parsed (stdout is not a terminal) /etc/apt/trusted.gpg -------------------- pub rsa1024 2009-10-22 [SC] 60C3 1780 3A41 BA51 845E 371A 1E93 77A2 BA9E F27F uid [ unknown] Launchpad Toolchain builds pub rsa1024 2014-01-08 [SC] B4C3 96DF 0DD9 A0ED 00B2 1D28 8550 4128 ECF1 204C uid [ unknown] Launchpad PPA for CI Train PPA Service Team pub rsa1024 2012-12-04 [SC] CDE5 112B D410 4F97 5FC8 A53F D4C0 B668 FD4C 9139 uid [ unknown] Launchpad PPA for Canonical Foundations Team pub rsa1024 2010-04-12 [SC] DA1A 4A13 543B 4668 53BA F164 EB9B 1D88 86F4 4E2A uid [ unknown] Launchpad OpenJDK builds (all archs) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-archive.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 790B C727 7767 219C 42C8 6F93 3B4F E6AC C0B2 1F32 uid [ unknown] Ubuntu Archive Automatic Signing Key (2012) /etc/apt/trusted.gpg.d/ubuntu-keyring-2012-cdimage.gpg ------------------------------------------------------ pub rsa4096 2012-05-11 [SC] 8439 38DF 228D 22F7 B374 2BC0 D94A A3F0 EFE2 1092 uid [ unknown] Ubuntu CD Image Automatic Signing Key (2012) RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16173495 Updating target for build PACKAGEBUILD-16173495 Get:1 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic InRelease [15.4 kB] Get:2 http://ftpmaster.internal/ubuntu bionic InRelease [242 kB] Get:3 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic InRelease [15.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-security InRelease [88.7 kB] Get:5 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic InRelease [15.4 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-updates InRelease [88.7 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic InRelease [15.4 kB] Get:8 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic InRelease [20.8 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [968 kB] Get:10 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic/main armhf Packages [680 B] Get:11 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage2/ubuntu bionic/main Translation-en [632 B] Get:12 http://ftpmaster.internal/ubuntu bionic/main Translation-en [516 kB] Get:13 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic/main armhf Packages [4080 B] Get:14 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [8269 kB] Get:15 http://ppa.launchpad.net/canonical-foundations/openjdk11-stage1/ubuntu bionic/main Translation-en [3620 B] Get:16 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:17 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic/main armhf Packages [4400 B] Get:18 http://ppa.launchpad.net/openjdk-r/ppa/ubuntu bionic/main Translation-en [1344 B] Get:19 http://ftpmaster.internal/ubuntu bionic/multiverse armhf Packages [129 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-security/main armhf Packages [180 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-security/main Translation-en [101 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-security/universe armhf Packages [123 kB] Get:23 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf Packages [40.7 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-security/universe Translation-en [71.2 kB] Get:25 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main Translation-en [14.5 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-security/multiverse armhf Packages [1448 B] Get:27 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf Packages [17.3 kB] Get:28 http://ftpmaster.internal/ubuntu bionic-security/multiverse Translation-en [1848 B] Get:29 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main Translation-en [7264 B] Get:30 http://ftpmaster.internal/ubuntu bionic-updates/main armhf Packages [415 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-updates/main Translation-en [196 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-updates/restricted armhf Packages [6476 B] Get:33 http://ftpmaster.internal/ubuntu bionic-updates/restricted Translation-en [3076 B] Get:34 http://ftpmaster.internal/ubuntu bionic-updates/universe armhf Packages [588 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-updates/universe Translation-en [189 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-updates/multiverse armhf Packages [3360 B] Get:37 http://ftpmaster.internal/ubuntu bionic-updates/multiverse Translation-en [3452 B] Fetched 17.3 MB in 8s (2194 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libblkid1 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgomp1 libkmod2 libmount1 libncurses5 libncursesw5 libperl5.26 libpng16-16 libprocps6 libsmartcols1 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtinfo5 libubsan0 libudev1 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pkgbinarymangler procps systemd systemd-sysv tar tzdata ubuntu-keyring util-linux 74 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 48.6 MB of archives. After this operation, 5330 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic-updates/main armhf base-files armhf 10.1ubuntu2.4 [59.9 kB] Get:2 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libgomp1 armhf 8.2.0-14ubuntu1~18.04~ppa1 [66.6 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates/main armhf bsdutils armhf 1:2.31.1-0.4ubuntu3.3 [55.5 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-updates/main armhf tar armhf 1.29b-2ubuntu0.1 [209 kB] Get:5 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf gcc-8-base armhf 8.2.0-14ubuntu1~18.04~ppa1 [18.6 kB] Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libgcc1 armhf 1:8.2.0-14ubuntu1~18.04~ppa1 [37.1 kB] Get:7 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libcc1-0 armhf 8.2.0-14ubuntu1~18.04~ppa1 [32.8 kB] Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libatomic1 armhf 8.2.0-14ubuntu1~18.04~ppa1 [7072 B] Get:9 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libstdc++6 armhf 8.2.0-14ubuntu1~18.04~ppa1 [350 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-updates/main armhf dpkg armhf 1.19.0.5ubuntu2.1 [1094 kB] Get:11 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libasan4 armhf 7.4.0-3ubuntu2~18.04~ppa1 [327 kB] Get:12 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libubsan0 armhf 7.4.0-3ubuntu2~18.04~ppa1 [108 kB] Get:13 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libcilkrts5 armhf 7.4.0-3ubuntu2~18.04~ppa1 [35.9 kB] Get:14 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf g++-7 armhf 7.4.0-3ubuntu2~18.04~ppa1 [7471 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libext2fs2 armhf 1.44.1-1ubuntu1.1 [144 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-updates/main armhf e2fsprogs armhf 1.44.1-1ubuntu1.1 [369 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-updates/main armhf ncurses-bin armhf 6.1-1ubuntu1.18.04 [155 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-security/main armhf libperl5.26 armhf 5.26.1-6ubuntu0.3 [2888 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-security/main armhf perl armhf 5.26.1-6ubuntu0.3 [201 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-security/main armhf perl-base armhf 5.26.1-6ubuntu0.3 [1291 kB] Get:21 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf gcc-7 armhf 7.4.0-3ubuntu2~18.04~ppa1 [7245 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-security/main armhf perl-modules-5.26 all 5.26.1-6ubuntu0.3 [2763 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libuuid1 armhf 2.31.1-0.4ubuntu3.3 [19.5 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libblkid1 armhf 2.31.1-0.4ubuntu3.3 [112 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libfdisk1 armhf 2.31.1-0.4ubuntu3.3 [152 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libmount1 armhf 2.31.1-0.4ubuntu3.3 [122 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libncurses5 armhf 6.1-1ubuntu1.18.04 [74.8 kB] Get:28 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libtinfo5 armhf 6.1-1ubuntu1.18.04 [68.2 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libncursesw5 armhf 6.1-1ubuntu1.18.04 [95.3 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libsmartcols1 armhf 2.31.1-0.4ubuntu3.3 [74.6 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-updates/main armhf fdisk armhf 2.31.1-0.4ubuntu3.3 [97.5 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-updates/main armhf util-linux armhf 2.31.1-0.4ubuntu3.3 [845 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-updates/main armhf ncurses-base all 6.1-1ubuntu1.18.04 [17.8 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-security/main armhf libudev1 armhf 237-3ubuntu10.13 [48.7 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libapt-pkg5.0 armhf 1.6.8 [731 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-security/main armhf libgcrypt20 armhf 1.8.1-4ubuntu1.1 [364 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpgv armhf 2.2.4-1ubuntu1.2 [167 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-updates/main armhf ubuntu-keyring all 2018.09.18.1~18.04.0 [22.4 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-updates/main armhf apt armhf 1.6.8 [1121 kB] Get:40 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libstdc++-7-dev armhf 7.4.0-3ubuntu2~18.04~ppa1 [1540 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-security/main armhf libapparmor1 armhf 2.12-4ubuntu5.1 [27.1 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcryptsetup12 armhf 2:2.0.2-1ubuntu1.1 [119 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libkmod2 armhf 24-1ubuntu3.2 [34.3 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-updates/main armhf mount armhf 2.31.1-0.4ubuntu3.3 [99.7 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-security/main armhf libprocps6 armhf 2:3.3.12-3ubuntu1.1 [28.8 kB] Get:46 http://ftpmaster.internal/ubuntu bionic-security/main armhf procps armhf 2:3.3.12-3ubuntu1.1 [213 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-security/main armhf systemd armhf 237-3ubuntu10.13 [2726 kB] Get:48 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libgcc-7-dev armhf 7.4.0-3ubuntu2~18.04~ppa1 [711 kB] Get:49 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf cpp-7 armhf 7.4.0-3ubuntu2~18.04~ppa1 [6549 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-security/main armhf libsystemd0 armhf 237-3ubuntu10.13 [186 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-security/main armhf systemd-sysv armhf 237-3ubuntu10.13 [12.0 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcom-err2 armhf 1.44.1-1ubuntu1.1 [8416 B] Get:53 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libss2 armhf 1.44.1-1ubuntu1.1 [9392 B] Get:54 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libbinutils armhf 2.30-21ubuntu1~18.04 [308 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-updates/main armhf binutils-common armhf 2.30-21ubuntu1~18.04 [193 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-updates/main armhf binutils armhf 2.30-21ubuntu1~18.04 [3356 B] Get:57 http://ftpmaster.internal/ubuntu bionic-updates/main armhf binutils-arm-linux-gnueabihf armhf 2.30-21ubuntu1~18.04 [2175 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-security/main armhf tzdata all 2018i-0ubuntu0.18.04 [189 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-security/main armhf libpng16-16 armhf 1.6.34-1ubuntu0.18.04.1 [159 kB] Get:60 http://ftpmaster.internal/ubuntu bionic-updates/main armhf cpp armhf 4:7.3.0-3ubuntu2.1 [27.6 kB] Get:61 http://ftpmaster.internal/ubuntu bionic-updates/main armhf dpkg-dev all 1.19.0.5ubuntu2.1 [608 kB] Get:62 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libdpkg-perl all 1.19.0.5ubuntu2.1 [211 kB] Get:63 http://ftpmaster.internal/ubuntu bionic-updates/main armhf e2fslibs armhf 1.44.1-1ubuntu1.1 [2712 B] Get:64 http://ftpmaster.internal/ubuntu bionic-updates/main armhf gcc armhf 4:7.3.0-3ubuntu2.1 [5204 B] Get:65 http://ftpmaster.internal/ubuntu bionic-updates/main armhf g++ armhf 4:7.3.0-3ubuntu2.1 [1576 B] Get:66 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpg armhf 2.2.4-1ubuntu1.2 [408 kB] Get:67 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpgconf armhf 2.2.4-1ubuntu1.2 [105 kB] Get:68 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpg-agent armhf 2.2.4-1ubuntu1.2 [188 kB] Get:69 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcomerr2 armhf 1.44.1-1ubuntu1.1 [2712 B] Get:70 http://ftpmaster.internal/ubuntu bionic-security/main armhf linux-libc-dev armhf 4.15.0-45.48 [981 kB] Get:71 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf gcc-7-base armhf 7.4.0-3ubuntu2~18.04~ppa1 [18.8 kB] Get:72 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf libssl1.1 armhf 1.1.1-1ubuntu2.1~18.04.0 [1064 kB] Get:73 http://ftpmaster.internal/ubuntu bionic-security/main armhf pkgbinarymangler all 138.18.04.0 [52.8 kB] Get:74 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf openssl armhf 1.1.1-1ubuntu2.1~18.04.0 [591 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.6 MB in 1s (38.9 MB/s) (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu2.4_armhf.deb ... Unpacking base-files (10.1ubuntu2.4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu2.4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu3.3_armhf.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu3.3) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu3.3) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../tar_1.29b-2ubuntu0.1_armhf.deb ... Unpacking tar (1.29b-2ubuntu0.1) over (1.29b-2) ... Setting up tar (1.29b-2ubuntu0.1) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu2.1_armhf.deb ... Unpacking dpkg (1.19.0.5ubuntu2.1) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu2.1) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-1ubuntu1.1_armhf.deb ... Unpacking libext2fs2:armhf (1.44.1-1ubuntu1.1) over (1.44.1-1) ... Setting up libext2fs2:armhf (1.44.1-1ubuntu1.1) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.1-1ubuntu1.1_armhf.deb ... Unpacking e2fsprogs (1.44.1-1ubuntu1.1) over (1.44.1-1) ... Setting up e2fsprogs (1.44.1-1ubuntu1.1) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1-1ubuntu1.18.04_armhf.deb ... Unpacking ncurses-bin (6.1-1ubuntu1.18.04) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1-1ubuntu1.18.04) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../libperl5.26_5.26.1-6ubuntu0.3_armhf.deb ... Unpacking libperl5.26:armhf (5.26.1-6ubuntu0.3) over (5.26.1-6) ... Preparing to unpack .../perl_5.26.1-6ubuntu0.3_armhf.deb ... Unpacking perl (5.26.1-6ubuntu0.3) over (5.26.1-6) ... Preparing to unpack .../perl-base_5.26.1-6ubuntu0.3_armhf.deb ... Unpacking perl-base (5.26.1-6ubuntu0.3) over (5.26.1-6) ... Setting up perl-base (5.26.1-6ubuntu0.3) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../perl-modules-5.26_5.26.1-6ubuntu0.3_all.deb ... Unpacking perl-modules-5.26 (5.26.1-6ubuntu0.3) over (5.26.1-6) ... Preparing to unpack .../libuuid1_2.31.1-0.4ubuntu3.3_armhf.deb ... Unpacking libuuid1:armhf (2.31.1-0.4ubuntu3.3) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:armhf (2.31.1-0.4ubuntu3.3) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../libblkid1_2.31.1-0.4ubuntu3.3_armhf.deb ... 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Kernel reported to sbuild: 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:53 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-060.buildd +==============================================================================+ | r-bioc-s4vectors 0.16.0-1 (armhf) 24 Feb 2019 10:20 | +==============================================================================+ Package: r-bioc-s4vectors Version: 0.16.0-1 Source Version: 0.16.0-1 Distribution: bionic Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/r-bioc-s4vectors-IniKfW/r-bioc-s4vectors-0.16.0' with '<>' I: NOTICE: Log filtering will replace 'build/r-bioc-s4vectors-IniKfW' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16173495/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- r-bioc-s4vectors_0.16.0-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-sSDDb1/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-sSDDb1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sSDDb1/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-sSDDb1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sSDDb1/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-sSDDb1/apt_archive ./ Packages [529 B] Fetched 2862 B in 0s (44.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-sSDDb1/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12392 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), r-base-dev, r-bioc-biocgenerics (>= 0.23.3), dh-r Filtered Build-Depends: debhelper (>= 10), r-base-dev, r-bioc-biocgenerics (>= 0.23.3), dh-r dpkg-deb: building package 'sbuild-build-depends-r-bioc-s4vectors-dummy' in '/<>/resolver-sqQvXA/apt_archive/sbuild-build-depends-r-bioc-s4vectors-dummy.deb'. Ign:1 copy:/<>/resolver-sqQvXA/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sqQvXA/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-sqQvXA/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sqQvXA/apt_archive ./ Sources [245 B] Get:5 copy:/<>/resolver-sqQvXA/apt_archive ./ Packages [562 B] Fetched 2926 B in 0s (57.8 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install r-bioc-s4vectors build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool intltool-debian jq libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnghttp2-14 libonig4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libtry-tiny-perl liburi-perl libwind0-heimdal libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-scour python3-six python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics scour ucf unzip x11-common xauth xdg-utils zip zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation devscripts debtags dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev gfortran-multilib gfortran-doc gfortran-7-multilib gfortran-7-doc libgfortran4-dbg libcoarrays-dev groff liblapack-doc libglib2.0-doc libgraphite2-utils krb5-doc krb5-user libdata-dump-perl icu-doc libcrypt-ssleay-perl liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libauthen-ntlm-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3-setuptools python3.6-venv python3.6-doc binfmt-support ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gir1.2-rsvg-2.0 python3-gi-cairo Recommended packages: curl | wget | lynx bzip2-doc libarchive-cpio-perl shared-mime-info xdg-user-dirs libhtml-format-perl krb5-locales libpng-tools publicsuffix libsasl2-modules libltdl-dev libdata-dump-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool intltool-debian jq libarchive-zip-perl libasn1-8-heimdal libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libelf1 libencode-locale-perl libexpat1 libfile-listing-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libgfortran-7-dev libgfortran4 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev libgssapi-krb5-2 libgssapi3-heimdal libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhx509-5-heimdal libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libiculx60 libio-html-perl libio-socket-ssl-perl libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common liblwp-mediatypes-perl liblwp-protocol-https-perl liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses5-dev libnet-http-perl libnet-ssleay-perl libnghttp2-14 libonig4 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libreadline-dev libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsm6 libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6 libtool libtry-tiny-perl liburi-perl libwind0-heimdal libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml-parser-perl libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support netbase perl-openssl-defaults pkg-config po-debconf python3 python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources python3-scour python3-six python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biocgenerics sbuild-build-depends-r-bioc-s4vectors-dummy scour ucf unzip x11-common xauth xdg-utils zip zlib1g-dev 0 upgraded, 186 newly installed, 0 to remove and 0 not upgraded. Need to get 76.8 MB of archives. After this operation, 229 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sqQvXA/apt_archive ./ sbuild-build-depends-r-bioc-s4vectors-dummy 0.invalid.0 [896 B] Get:2 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf libpython3.6-minimal armhf 3.6.8-1~18.04.1 [523 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf libexpat1 armhf 2.2.5-3 [59.7 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-updates/main armhf python3-minimal armhf 3.6.7-1~18.04 [23.7 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf mime-support all 3.60ubuntu1 [30.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf libmpdec2 armhf 2.4.2-1ubuntu1 [66.4 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libpython3-stdlib armhf 3.6.7-1~18.04 [7240 B] Get:8 http://ftpmaster.internal/ubuntu bionic-updates/main armhf python3 armhf 3.6.7-1~18.04 [47.2 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main armhf libxau6 armhf 1:1.0.8-1 [7324 B] Get:10 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf python3.6-minimal armhf 3.6.8-1~18.04.1 [1341 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf libbsd0 armhf 0.8.7-1 [40.4 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main armhf libxdmcp6 armhf 1:1.1.2-3 [9316 B] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb1 armhf 1.13-1 [41.2 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-security/main armhf libx11-data all 2:1.6.4-3ubuntu0.1 [113 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-security/main armhf libx11-6 armhf 2:1.6.4-3ubuntu0.1 [514 kB] Get:16 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf libpython3.6-stdlib armhf 3.6.8-1~18.04.1 [1638 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf bsdmainutils armhf 11.1.2ubuntu1 [177 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:20 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf python3.6 armhf 3.6.8-1~18.04.1 [202 kB] Get:21 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf libnet-ssleay-perl armhf 1.84-1ubuntu0.1 [264 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-updates/main armhf man-db armhf 2.8.3-2ubuntu0.1 [993 kB] Get:24 http://ppa.launchpad.net/ci-train-ppa-service/3473/ubuntu bionic/main armhf libio-socket-ssl-perl all 2.060-3~ubuntu18.04.0 [173 kB] Get:25 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libgfortran4 armhf 7.4.0-3ubuntu2~18.04~ppa1 [201 kB] Get:26 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf libgfortran-7-dev armhf 7.4.0-3ubuntu2~18.04~ppa1 [249 kB] Get:27 http://ppa.launchpad.net/ubuntu-toolchain-r/ppa/ubuntu bionic/main armhf gfortran-7 armhf 7.4.0-3ubuntu2~18.04~ppa1 [6927 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf libfreetype6 armhf 2.8.1-2ubuntu2 [280 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf ucf all 3.0038 [50.5 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf libfontconfig1 armhf 2.12.6-0ubuntu2 [120 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf fontconfig armhf 2.12.6-0ubuntu2 [167 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-security/main armhf libjpeg-turbo8 armhf 1.5.2-0ubuntu5.18.04.1 [87.4 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-updates/main armhf x11-common all 1:7.7+19ubuntu7.1 [22.5 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main armhf libice6 armhf 2:1.0.9-2 [33.5 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main armhf libsm6 armhf 2:1.2.2-1 [13.9 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main armhf libxft2 armhf 2.3.2-1 [30.5 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main armhf libxss1 armhf 1:1.2.2-1 [7652 B] Get:41 http://ftpmaster.internal/ubuntu bionic-security/main armhf libmagic-mgc armhf 1:5.32-2ubuntu0.1 [184 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-security/main armhf libmagic1 armhf 1:5.32-2ubuntu0.1 [62.7 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-security/main armhf file armhf 1:5.32-2ubuntu0.1 [21.5 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libglib2.0-0 armhf 2.56.3-0ubuntu0.18.04.1 [1016 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main armhf libgirepository-1.0-1 armhf 1.56.1-1 [69.4 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main armhf gir1.2-glib-2.0 armhf 1.56.1-1 [131 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main armhf libelf1 armhf 0.170-0.4 [42.2 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libglib2.0-data all 2.56.3-0ubuntu0.18.04.1 [4696 B] Get:49 http://ftpmaster.internal/ubuntu bionic/main armhf libicu60 armhf 60.2-3ubuntu3 [7797 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-security/main armhf libxml2 armhf 2.9.4+dfsg1-6.1ubuntu1.2 [567 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main armhf netbase all 5.4 [12.7 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-security/main armhf gettext-base armhf 0.19.8.1-6ubuntu0.1 [46.4 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-security/main armhf libkrb5support0 armhf 1.16-2ubuntu0.1 [27.3 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-security/main armhf libk5crypto3 armhf 1.16-2ubuntu0.1 [83.2 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main armhf libkeyutils1 armhf 1.5.9-9.2ubuntu2 [7796 B] Get:56 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bionic-security/main armhf autopoint all 0.19.8.1-6ubuntu0.1 [412 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main armhf libtool all 2.4.6-2 [194 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main armhf dh-autoreconf all 17 [15.8 kB] Get:69 http://ftpmaster.internal/ubuntu bionic-security/main armhf libarchive-zip-perl all 1.60-1ubuntu0.1 [84.6 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main armhf dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:73 http://ftpmaster.internal/ubuntu bionic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:74 http://ftpmaster.internal/ubuntu bionic-security/main armhf gettext armhf 0.19.8.1-6ubuntu0.1 [834 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main armhf po-debconf all 1.0.20 [232 kB] Get:77 http://ftpmaster.internal/ubuntu bionic-updates/main armhf debhelper all 11.1.6ubuntu2 [902 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main armhf liburi-perl all 1.73-1 [77.2 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main armhf libencode-locale-perl all 1.05-1 [12.3 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main armhf libhttp-date-perl all 6.02-1 [10.4 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-listing-perl all 6.04-1 [9774 B] Get:82 http://ftpmaster.internal/ubuntu bionic/main armhf libhtml-tagset-perl all 3.20-3 [12.1 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main armhf libhtml-parser-perl armhf 3.72-3build1 [82.7 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main armhf libhtml-tree-perl all 5.07-1 [200 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main armhf libio-html-perl all 1.001-1 [14.9 kB] Get:86 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http://ftpmaster.internal/ubuntu bionic/main armhf libxml-parser-perl armhf 2.44-2build3 [196 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/universe armhf intltool all 0.51.0-5ubuntu1 [44.6 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/universe armhf libonig4 armhf 6.7.0-1 [102 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/universe armhf libjq1 armhf 1.5+dfsg-2 [111 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/universe armhf jq armhf 1.5+dfsg-2 [47.3 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-which-perl all 1.21-1 [11.8 kB] Get:102 http://ftpmaster.internal/ubuntu bionic-security/universe armhf dh-translations all 138.18.04.0 [23.5 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main armhf python3-six all 1.11.0-2 [11.4 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main armhf python3-pkg-resources all 39.0.1-2 [98.8 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/universe armhf python3-scour all 0.36-2 [44.8 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/universe armhf scour all 0.36-2 [7372 B] Get:107 http://ftpmaster.internal/ubuntu bionic/universe armhf cdbs all 0.4.156ubuntu4 [45.4 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main armhf dctrl-tools armhf 2.24-2build1 [52.9 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main armhf zip armhf 3.0-11build1 [145 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main armhf unzip armhf 6.0-21ubuntu1 [148 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main armhf libpaper1 armhf 1.1.24+nmu5ubuntu1 [12.9 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main armhf libpaper-utils armhf 1.1.24+nmu5ubuntu1 [8026 B] Get:113 http://ftpmaster.internal/ubuntu bionic-updates/main armhf xdg-utils all 1.1.2-1ubuntu2.3 [60.7 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main armhf libblas3 armhf 3.7.1-4ubuntu1 [97.0 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main armhf libpixman-1-0 armhf 0.34.0-2 [157 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-render0 armhf 1.13-1 [13.9 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/main armhf libxcb-shm0 armhf 1.13-1 [5404 B] Get:118 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcairo2 armhf 1.15.10-2ubuntu0.1 [506 kB] Get:119 http://ftpmaster.internal/ubuntu bionic/main armhf libroken18-heimdal armhf 7.5.0+dfsg-1 [34.1 kB] Get:120 http://ftpmaster.internal/ubuntu bionic/main armhf libasn1-8-heimdal armhf 7.5.0+dfsg-1 [136 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main armhf libheimbase1-heimdal armhf 7.5.0+dfsg-1 [24.1 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main armhf libhcrypto4-heimdal armhf 7.5.0+dfsg-1 [76.5 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main armhf libwind0-heimdal armhf 7.5.0+dfsg-1 [47.2 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main armhf libhx509-5-heimdal armhf 7.5.0+dfsg-1 [87.9 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main armhf libkrb5-26-heimdal armhf 7.5.0+dfsg-1 [168 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main armhf libheimntlm0-heimdal armhf 7.5.0+dfsg-1 [13.1 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main armhf libgssapi3-heimdal armhf 7.5.0+dfsg-1 [78.8 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.0 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [42.0 kB] Get:130 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libldap-common all 2.4.45+dfsg-1ubuntu1.1 [16.6 kB] Get:131 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libldap-2.4-2 armhf 2.4.45+dfsg-1ubuntu1.1 [132 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main armhf libnghttp2-14 armhf 1.30.0-1ubuntu1 [67.4 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [49.1 kB] Get:134 http://ftpmaster.internal/ubuntu bionic-security/main armhf libcurl4 armhf 7.58.0-2ubuntu3.6 [183 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:136 http://ftpmaster.internal/ubuntu bionic/main armhf liblapack3 armhf 3.7.1-4ubuntu1 [1627 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main armhf libthai-data all 0.1.27-2 [133 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main armhf libdatrie1 armhf 0.2.10-7 [14.5 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main armhf libthai0 armhf 0.1.27-2 [14.7 kB] Get:140 http://ftpmaster.internal/ubuntu bionic-security/main armhf libpango-1.0-0 armhf 1.40.14-1ubuntu0.1 [137 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main armhf libgraphite2-3 armhf 1.3.11-2 [67.5 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main armhf libharfbuzz0b armhf 1.7.2-1ubuntu1 [205 kB] Get:143 http://ftpmaster.internal/ubuntu bionic-security/main armhf libpangoft2-1.0-0 armhf 1.40.14-1ubuntu0.1 [28.5 kB] Get:144 http://ftpmaster.internal/ubuntu bionic-security/main armhf libpangocairo-1.0-0 armhf 1.40.14-1ubuntu0.1 [17.5 kB] Get:145 http://ftpmaster.internal/ubuntu bionic/main armhf libtcl8.6 armhf 8.6.8+dfsg-3 [776 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/main armhf libjbig0 armhf 2.1-3.1build1 [23.9 kB] Get:147 http://ftpmaster.internal/ubuntu bionic-security/main armhf libtiff5 armhf 4.0.9-5ubuntu0.1 [135 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/main armhf libtk8.6 armhf 8.6.8-4 [612 kB] Get:149 http://ftpmaster.internal/ubuntu bionic/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/universe armhf r-base-core armhf 3.4.4-1ubuntu1 [22.9 MB] Get:151 http://ftpmaster.internal/ubuntu bionic-updates/main armhf gfortran armhf 4:7.3.0-3ubuntu2.1 [1352 B] Get:152 http://ftpmaster.internal/ubuntu bionic/main armhf libblas-dev armhf 3.7.1-4ubuntu1 [104 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/main armhf liblapack-dev armhf 3.7.1-4ubuntu1 [1675 kB] Get:154 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libtinfo-dev armhf 6.1-1ubuntu1.18.04 [71.1 kB] Get:155 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libncurses5-dev armhf 6.1-1ubuntu1.18.04 [157 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main armhf libreadline-dev armhf 7.0-3 [121 kB] Get:157 http://ftpmaster.internal/ubuntu bionic-security/main armhf libjpeg-turbo8-dev armhf 1.5.2-0ubuntu5.18.04.1 [199 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg8-dev armhf 8c-2ubuntu8 [1554 B] Get:159 http://ftpmaster.internal/ubuntu bionic/main armhf libjpeg-dev armhf 8c-2ubuntu8 [1554 B] Get:160 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre16-3 armhf 2:8.39-9 [128 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre32-3 armhf 2:8.39-9 [120 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main armhf libpcrecpp0v5 armhf 2:8.39-9 [13.2 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre3-dev armhf 2:8.39-9 [473 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] Get:165 http://ftpmaster.internal/ubuntu bionic-security/main armhf libpng-dev armhf 1.6.34-1ubuntu0.18.04.1 [162 kB] Get:166 http://ftpmaster.internal/ubuntu bionic/main armhf libbz2-dev armhf 1.0.6-8.1 [27.6 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main armhf liblzma-dev armhf 5.2.2-1.3 [138 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main armhf libicu-le-hb0 armhf 1.0.3+git161113-4 [12.5 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main armhf libiculx60 armhf 60.2-3ubuntu3 [16.1 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main armhf icu-devtools armhf 60.2-3ubuntu3 [161 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main armhf libharfbuzz-icu0 armhf 1.7.2-1ubuntu1 [5196 B] Get:172 http://ftpmaster.internal/ubuntu bionic/main armhf libharfbuzz-gobject0 armhf 1.7.2-1ubuntu1 [12.0 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/main armhf gir1.2-harfbuzz-0.0 armhf 1.7.2-1ubuntu1 [18.5 kB] Get:174 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libglib2.0-bin armhf 2.56.3-0ubuntu0.18.04.1 [62.9 kB] Get:175 http://ftpmaster.internal/ubuntu bionic-updates/main armhf python3-lib2to3 all 3.6.7-1~18.04 [76.5 kB] Get:176 http://ftpmaster.internal/ubuntu bionic-updates/main armhf python3-distutils all 3.6.7-1~18.04 [141 kB] Get:177 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libglib2.0-dev-bin armhf 2.56.3-0ubuntu0.18.04.1 [99.7 kB] Get:178 http://ftpmaster.internal/ubuntu bionic/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:179 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libglib2.0-dev armhf 2.56.3-0ubuntu0.18.04.1 [1284 kB] Get:180 http://ftpmaster.internal/ubuntu bionic/main armhf libgraphite2-dev armhf 1.3.11-2 [14.5 kB] Get:181 http://ftpmaster.internal/ubuntu bionic/main armhf libharfbuzz-dev armhf 1.7.2-1ubuntu1 [276 kB] Get:182 http://ftpmaster.internal/ubuntu bionic/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-4 [27.8 kB] Get:183 http://ftpmaster.internal/ubuntu bionic/main armhf libicu-dev armhf 60.2-3ubuntu3 [8715 kB] Get:184 http://ftpmaster.internal/ubuntu bionic/universe armhf r-base-dev all 3.4.4-1ubuntu1 [4532 B] Get:185 http://ftpmaster.internal/ubuntu bionic/universe armhf dh-r all 20180403 [12.5 kB] Get:186 http://ftpmaster.internal/ubuntu bionic/universe armhf r-bioc-biocgenerics all 0.24.0-1ubuntu2 [565 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.8 MB in 3s (27.8 MB/s) Selecting previously unselected package libpython3.6-minimal:armhf. (Reading database ... 12392 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.8-1~18.04.1_armhf.deb ... Unpacking libpython3.6-minimal:armhf (3.6.8-1~18.04.1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.2.5-3_armhf.deb ... Unpacking libexpat1:armhf (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.8-1~18.04.1_armhf.deb ... Unpacking python3.6-minimal (3.6.8-1~18.04.1) ... Setting up libpython3.6-minimal:armhf (3.6.8-1~18.04.1) ... Setting up libexpat1:armhf (2.2.5-3) ... Setting up python3.6-minimal (3.6.8-1~18.04.1) ... Selecting previously unselected package python3-minimal. (Reading database ... 12639 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.7-1~18.04_armhf.deb ... Unpacking python3-minimal (3.6.7-1~18.04) ... Selecting previously unselected package mime-support. 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Setting up libbz2-dev:armhf (1.0.6-8.1) ... Setting up libarchive-zip-perl (1.60-1ubuntu0.1) ... Setting up libnghttp2-14:armhf (1.30.0-1ubuntu1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libfile-which-perl (1.21-1) ... Setting up libgfortran4:armhf (7.4.0-3ubuntu2~18.04~ppa1) ... Setting up libencode-locale-perl (1.05-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:armhf (2.1-3.1build1) ... Setting up libsigsegv2:armhf (2.12-1) ... Setting up libldap-common (2.4.45+dfsg-1ubuntu1.1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up perl-openssl-defaults:armhf (3build1) ... Setting up libpsl5:armhf (0.19.1-5build1) ... Setting up libelf1:armhf (0.170-0.4) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.56.3-0ubuntu0.18.04.1) ... No schema files found: doing nothing. Setting up libio-html-perl (1.001-1) ... Setting up libonig4:armhf (6.7.0-1) ... Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up unzip (6.0-21ubuntu1) ... Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libtinfo-dev:armhf (6.1-1ubuntu1.18.04) ... Setting up dctrl-tools (2.24-2build1) ... Setting up libdatrie1:armhf (0.2.10-7) ... Setting up gettext-base (0.19.8.1-6ubuntu0.1) ... Setting up libjpeg-turbo8:armhf (1.5.2-0ubuntu5.18.04.1) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up libroken18-heimdal:armhf (7.5.0+dfsg-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.7-1) ... Setting up libkrb5support0:armhf (1.16-2ubuntu0.1) ... Setting up ucf (3.0038) ... Setting up libgirepository-1.0-1:armhf (1.56.1-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1.2) ... Setting up zip (3.0-11build1) ... Setting up libfreetype6:armhf (2.8.1-2ubuntu2) ... Setting up libmagic-mgc (1:5.32-2ubuntu0.1) ... Setting up libmagic1:armhf (1:5.32-2ubuntu0.1) ... Setting up libgraphite2-3:armhf (1.3.11-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up libncurses5-dev:armhf (6.1-1ubuntu1.18.04) ... Setting up libjq1:armhf (1.5+dfsg-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Setting up libpixman-1-0:armhf (0.34.0-2) ... Setting up libblas3:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up gir1.2-glib-2.0:armhf (1.56.1-1) ... Setting up libjpeg-turbo8-dev:armhf (1.5.2-0ubuntu5.18.04.1) ... Setting up libglib2.0-data (2.56.3-0ubuntu0.18.04.1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up liburi-perl (1.73-1) ... Setting up libheimbase1-heimdal:armhf (7.5.0+dfsg-1) ... Processing triggers for systemd (237-3ubuntu10.13) ... Setting up libhtml-parser-perl (3.72-3build1) ... Setting up libgfortran-7-dev:armhf (7.4.0-3ubuntu2~18.04~ppa1) ... Setting up libreadline-dev:armhf (7.0-3) ... Setting up gfortran-7 (7.4.0-3ubuntu2~18.04~ppa1) ... Setting up libpcrecpp0v5:armhf (2:8.39-9) ... Setting up libpcre32-3:armhf (2:8.39-9) ... Setting up libnet-http-perl (6.17-1) ... Setting up icu-devtools (60.2-3ubuntu3) ... Setting up libpcre16-3:armhf (2:8.39-9) ... Setting up libtcl8.6:armhf (8.6.8+dfsg-3) ... Setting up libthai-data (0.1.27-2) ... Setting up liblzma-dev:armhf (5.2.2-1.3) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libkeyutils1:armhf (1.5.9-9.2ubuntu2) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+19ubuntu7.1) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up xdg-utils (1.1.2-1ubuntu2.3) ... Setting up libglib2.0-bin (2.56.3-0ubuntu0.18.04.1) ... Setting up libgraphite2-dev:armhf (1.3.11-2) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libx11-data (2:1.6.4-3ubuntu0.1) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6ubuntu0.1) ... Setting up libmpdec2:armhf (2.4.2-1ubuntu1) ... Setting up netbase (5.4) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up libpaper1:armhf (1.1.24+nmu5ubuntu1) ... Creating config file /etc/papersize with new version Setting up gfortran (4:7.3.0-3ubuntu2.1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libpython3.6-stdlib:armhf (3.6.8-1~18.04.1) ... Setting up libk5crypto3:armhf (1.16-2ubuntu0.1) ... Setting up libpaper-utils (1.1.24+nmu5ubuntu1) ... Setting up jq (1.5+dfsg-2) ... Setting up libpcre3-dev:armhf (2:8.39-9) ... Setting up fontconfig-config (2.12.6-0ubuntu2) ... Setting up libhttp-date-perl (6.02-1) ... Setting up python3.6 (3.6.8-1~18.04.1) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up gettext (0.19.8.1-6ubuntu0.1) ... Setting up libblas-dev:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libnet-ssleay-perl (1.84-1ubuntu0.1) ... Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-1) ... Setting up liblapack3:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libharfbuzz0b:armhf (1.7.2-1ubuntu1) ... Setting up libtiff5:armhf (4.0.9-5ubuntu0.1) ... Setting up autoconf (2.69-11) ... Setting up libthai0:armhf (0.1.27-2) ... Setting up file (1:5.32-2ubuntu0.1) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libio-socket-ssl-perl (2.060-3~ubuntu18.04.0) ... Setting up libhtml-tree-perl (5.07-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:armhf (8c-2ubuntu8) ... Setting up gir1.2-harfbuzz-0.0:armhf (1.7.2-1ubuntu1) ... Setting up libjpeg-dev:armhf (8c-2ubuntu8) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:armhf (2:1.0.9-2) ... Setting up libfile-listing-perl (6.04-1) ... Setting up man-db (2.8.3-2ubuntu0.1) ... Not building database; man-db/auto-update is not 'true'. Setting up libhttp-message-perl (6.14-1) ... Setting up libkrb5-3:armhf (1.16-2ubuntu0.1) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libpng-dev:armhf (1.6.34-1ubuntu0.18.04.1) ... Setting up libxcb1:armhf (1.13-1) ... Setting up libharfbuzz-gobject0:armhf (1.7.2-1ubuntu1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up liblapack-dev:armhf (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libtool (2.4.6-2) ... Setting up libpython3-stdlib:armhf (3.6.7-1~18.04) ... Setting up libfontconfig1:armhf (2.12.6-0ubuntu2) ... Setting up libsm6:armhf (2:1.2.2-1) ... Setting up libxcb-render0:armhf (1.13-1) ... Setting up libharfbuzz-icu0:armhf (1.7.2-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.7-1~18.04) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libicu-le-hb0:armhf (1.0.3+git161113-4) ... Setting up python3-six (1.11.0-2) ... Setting up libx11-6:armhf (2:1.6.4-3ubuntu0.1) ... Setting up python3-pkg-resources (39.0.1-2) ... Setting up libxmuu1:armhf (2:1.1.2-2) ... Setting up libgssapi-krb5-2:armhf (1.16-2ubuntu0.1) ... Setting up libiculx60:armhf (60.2-3ubuntu3) ... Setting up libxcb-shm0:armhf (1.13-1) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libxft2:armhf (2.3.2-1) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-1) ... Setting up python3-lib2to3 (3.6.7-1~18.04) ... Setting up python3-distutils (3.6.7-1~18.04) ... Setting up fontconfig (2.12.6-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libglib2.0-dev-bin (2.56.3-0ubuntu0.18.04.1) ... Setting up libxss1:armhf (1:1.2.2-1) ... Setting up python3-scour (0.36-2) ... Setting up scour (0.36-2) ... Setting up libglib2.0-dev:armhf (2.56.3-0ubuntu0.18.04.1) ... Setting up xauth (1:1.0.10-1) ... Setting up libldap-2.4-2:armhf (2.4.45+dfsg-1ubuntu1.1) ... Setting up libpango-1.0-0:armhf (1.40.14-1ubuntu0.1) ... Setting up libcairo2:armhf (1.15.10-2ubuntu0.1) ... Setting up libtk8.6:armhf (8.6.8-4) ... Setting up libcurl4:armhf (7.58.0-2ubuntu3.6) ... Setting up libpangoft2-1.0-0:armhf (1.40.14-1ubuntu0.1) ... Setting up libpangocairo-1.0-0:armhf (1.40.14-1ubuntu0.1) ... Setting up r-base-core (3.4.4-1ubuntu1) ... Creating config file /etc/R/Renviron with new version Setting up r-bioc-biocgenerics (0.24.0-1ubuntu2) ... Setting up dh-autoreconf (17) ... Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-4) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up libicu-dev (60.2-3ubuntu3) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up libharfbuzz-dev:armhf (1.7.2-1ubuntu1) ... Setting up libwww-perl (6.31-1) ... Setting up debhelper (11.1.6ubuntu2) ... Setting up libxml-parser-perl (2.44-2build3) ... Setting up intltool (0.51.0-5ubuntu1) ... Setting up dh-translations (138.18.04.0) ... Setting up cdbs (0.4.156ubuntu4) ... Setting up r-base-dev (3.4.4-1ubuntu1) ... Setting up dh-r (20180403) ... Setting up sbuild-build-depends-r-bioc-s4vectors-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (237-3ubuntu10.13) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-142-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-21ubuntu1~18.04 dpkg-dev_1.19.0.5ubuntu2.1 g++-7_7.4.0-3ubuntu2~18.04~ppa1 gcc-7_7.4.0-3ubuntu2~18.04~ppa1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.4.0-3ubuntu2~18.04~ppa1 libstdc++6_8.2.0-14ubuntu1~18.04~ppa1 linux-libc-dev_4.15.0-45.48 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.8 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6ubuntu0.1 autotools-dev_20180224.1 base-files_10.1ubuntu2.4 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-21ubuntu1~18.04 binutils-arm-linux-gnueabihf_2.30-21ubuntu1~18.04 binutils-common_2.30-21ubuntu1~18.04 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3.3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20180409 cdbs_0.4.156ubuntu4 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu2.1 cpp-7_7.4.0-3ubuntu2~18.04~ppa1 dash_0.5.8-2.10 dctrl-tools_2.24-2build1 debconf_1.5.66 debhelper_11.1.6ubuntu2 debianutils_4.8.4 dh-autoreconf_17 dh-r_20180403 dh-strip-nondeterminism_0.040-1.1~build1 dh-translations_138.18.04.0 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu2.1 dpkg-dev_1.19.0.5ubuntu2.1 e2fslibs_1.44.1-1ubuntu1.1 e2fsprogs_1.44.1-1ubuntu1.1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu3.3 file_1:5.32-2ubuntu0.1 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0ubuntu2 fontconfig-config_2.12.6-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:7.3.0-3ubuntu2.1 g++-7_7.4.0-3ubuntu2~18.04~ppa1 gcc_4:7.3.0-3ubuntu2.1 gcc-7_7.4.0-3ubuntu2~18.04~ppa1 gcc-7-base_7.4.0-3ubuntu2~18.04~ppa1 gcc-8-base_8.2.0-14ubuntu1~18.04~ppa1 gettext_0.19.8.1-6ubuntu0.1 gettext-base_0.19.8.1-6ubuntu0.1 gfortran_4:7.3.0-3ubuntu2.1 gfortran-7_7.4.0-3ubuntu2~18.04~ppa1 gir1.2-glib-2.0_1.56.1-1 gir1.2-harfbuzz-0.0_1.7.2-1ubuntu1 gpg_2.2.4-1ubuntu1.2 gpg-agent_2.2.4-1ubuntu1.2 gpgconf_2.2.4-1ubuntu1.2 gpgv_2.2.4-1ubuntu1.2 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 icu-devtools_60.2-3ubuntu3 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool_0.51.0-5ubuntu1 intltool-debian_0.35.0+20060710.4 jq_1.5+dfsg-2 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5.1 libapt-pkg5.0_1.6.8 libarchive-zip-perl_1.60-1ubuntu0.1 libargon2-0_0~20161029-1.1 libasan4_7.4.0-3ubuntu2~18.04~ppa1 libasn1-8-heimdal_7.5.0+dfsg-1 libassuan0_2.5.1-2 libatomic1_8.2.0-14ubuntu1~18.04~ppa1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-21ubuntu1~18.04 libblas-dev_3.7.1-4ubuntu1 libblas3_3.7.1-4ubuntu1 libblkid1_2.31.1-0.4ubuntu3.3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 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libpsl5_0.19.1-5build1 libpython3-stdlib_3.6.7-1~18.04 libpython3.6-minimal_3.6.8-1~18.04.1 libpython3.6-stdlib_3.6.8-1~18.04.1 libreadline-dev_7.0-3 libreadline7_7.0-3 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.31.1-0.4ubuntu3.3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1ubuntu1.1 libssl1.1_1.1.1-1ubuntu2.1~18.04.0 libstdc++-7-dev_7.4.0-3ubuntu2~18.04~ppa1 libstdc++6_8.2.0-14ubuntu1~18.04~ppa1 libsystemd0_237-3ubuntu10.13 libtasn1-6_4.13-2 libtcl8.6_8.6.8+dfsg-3 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff5_4.0.9-5ubuntu0.1 libtimedate-perl_2.3000-2 libtinfo-dev_6.1-1ubuntu1.18.04 libtinfo5_6.1-1ubuntu1.18.04 libtk8.6_8.6.8-4 libtool_2.4.6-2 libtry-tiny-perl_0.30-1 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passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6ubuntu0.3 perl-base_5.26.1-6ubuntu0.3 perl-modules-5.26_5.26.1-6ubuntu0.3 perl-openssl-defaults_3build1 pinentry-curses_1.1.0-1 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_138.18.04.0 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1.1 python3_3.6.7-1~18.04 python3-distutils_3.6.7-1~18.04 python3-lib2to3_3.6.7-1~18.04 python3-minimal_3.6.7-1~18.04 python3-pkg-resources_39.0.1-2 python3-scour_0.36-2 python3-six_1.11.0-2 python3.6_3.6.8-1~18.04.1 python3.6-minimal_3.6.8-1~18.04.1 r-base-core_3.4.4-1ubuntu1 r-base-dev_3.4.4-1ubuntu1 r-bioc-biocgenerics_0.24.0-1ubuntu2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-s4vectors-dummy_0.invalid.0 scour_0.36-2 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10.13 systemd-sysv_237-3ubuntu10.13 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2ubuntu0.1 tzdata_2018i-0ubuntu0.18.04 ubuntu-keyring_2018.09.18.1~18.04.0 ucf_3.0038 unzip_6.0-21ubuntu1 util-linux_2.31.1-0.4ubuntu3.3 x11-common_1:7.7+19ubuntu7.1 xauth_1:1.0.10-1 xdg-utils_1.1.2-1ubuntu2.3 xz-utils_5.2.2-1.3 zip_3.0-11build1 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Nov 7 17:02:33 2017 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-s4vectors_0.16.0-1.dsc dpkg-source: info: extracting r-bioc-s4vectors in r-bioc-s4vectors-0.16.0 dpkg-source: info: unpacking r-bioc-s4vectors_0.16.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-s4vectors_0.16.0-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16173495 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16173495 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16173495 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package r-bioc-s4vectors dpkg-buildpackage: info: source version 0.16.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build r-bioc-s4vectors-0.16.0 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem R dh_testdir -O--buildsystem=R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build-arch dh build-arch --buildsystem R dh_testdir -a -O--buildsystem=R dh_update_autotools_config -a -O--buildsystem=R dh_autoreconf -a -O--buildsystem=R dh_auto_configure -a -O--buildsystem=R dh_auto_build -a -O--buildsystem=R dh_auto_test -a -O--buildsystem=R create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --buildsystem R dh_testroot -a -O--buildsystem=R dh_prep -a -O--buildsystem=R dh_installdirs -a -O--buildsystem=R dh_auto_install -a -O--buildsystem=R I: R Package: S4Vectors Version: 0.16.0 I: Building using R version 3.4.4-1ubuntu1 I: R API version: r-api-3.4 I: Using built-time from d/changelog: Tue, 07 Nov 2017 17:44:21 +0100 mkdir -p /<>/debian/r-bioc-s4vectors/usr/lib/R/site-library R CMD INSTALL -l /<>/debian/r-bioc-s4vectors/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 07 Nov 2017 17:44:21 +0100'" * installing *source* package ‘S4Vectors’ ... ** libs make[1]: Entering directory '/<>/src' gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c AEbufs.c -o AEbufs.o AEbufs.c: In function ‘_increase_buflength’: AEbufs.c:16:23: warning: large integer implicitly truncated to unsigned type [-Woverflow] #define MAX_BUFLENGTH (128ULL * MAX_BUFLENGTH_INC) // 2^32 ^ AEbufs.c:31:9: note: in expansion of macro ‘MAX_BUFLENGTH’ return MAX_BUFLENGTH; ^~~~~~~~~~~~~ AEbufs.c: In function ‘_IntAEAE_toEnvir’: AEbufs.c:613:36: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t {aka unsigned int}’ [-Wformat=] snprintf(key, sizeof(key), "%010lu", i + keyshift); ~~~~~^ ~~~~~~~~~~~~ %010u gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DataFrame_class.c -o DataFrame_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Hits_class.c -o Hits_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LLint_class.c -o LLint_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c List_class.c -o List_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_S4Vectors.c -o R_init_S4Vectors.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rle_class.c -o Rle_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rle_utils.c -o Rle_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SEXP_utils.c -o SEXP_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c SimpleList_class.c -o SimpleList_class.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c anyMissing.c -o anyMissing.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c character_utils.c -o character_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c eval_utils.c -o eval_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c hash_utils.c -o hash_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c integer_utils.c -o integer_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c logical_utils.c -o logical_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c map_ranges_to_runs.c -o map_ranges_to_runs.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c safe_arithm.c -o safe_arithm.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sort_utils.c -o sort_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c subsetting_utils.c -o subsetting_utils.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fdebug-prefix-map=/build/r-base-fu5a7w/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vector_utils.c -o vector_utils.o g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/<>/src' make[1]: Entering directory '/<>/src' make[1]: Leaving directory '/<>/src' installing to /<>/debian/r-bioc-s4vectors/usr/lib/R/site-library/S4Vectors/libs ** R ** inst ** preparing package for lazy loading in method for ‘extractROWS’ with signature ‘"array","RangesNSBS"’: no definition for class “RangesNSBS” Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’ Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’ Creating a generic function for ‘%in%’ from package ‘base’ in package ‘S4Vectors’ Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’ Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’ Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’ Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’ in method for ‘coerce’ with signature ‘"data.table","DataFrame"’: no definition for class “data.table” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (S4Vectors) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294. W: Ignoring specified R dependency: R (>= 3.3.0) W: Cannot find a debian package for Depends:stats4 I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3) I: Using r-bioc-iranges for Suggests:IRanges I: Using r-bioc-genomicranges for Suggests:GenomicRanges I: Using r-cran-matrix for Suggests:Matrix I: Using r-bioc-shortread for Suggests:ShortRead I: Using r-bioc-graph for Suggests:graph I: Using r-cran-data.table for Suggests:data.table I: Using r-cran-runit for Suggests:RUnit dh_install -a -O--buildsystem=R dh_installdocs -a -O--buildsystem=R dh_installchangelogs -a -O--buildsystem=R dh_installexamples -a -O--buildsystem=R dh_installman -a -O--buildsystem=R dh_installcatalogs -a -O--buildsystem=R dh_installcron -a -O--buildsystem=R dh_installdebconf -a -O--buildsystem=R dh_installemacsen -a -O--buildsystem=R dh_installifupdown -a -O--buildsystem=R dh_installinfo -a -O--buildsystem=R dh_systemd_enable -a -O--buildsystem=R dh_installinit -a -O--buildsystem=R dh_systemd_start -a -O--buildsystem=R dh_installmenu -a -O--buildsystem=R dh_installmime -a -O--buildsystem=R dh_installmodules -a -O--buildsystem=R dh_installlogcheck -a -O--buildsystem=R dh_installlogrotate -a -O--buildsystem=R dh_installpam -a -O--buildsystem=R dh_installppp -a -O--buildsystem=R dh_installudev -a -O--buildsystem=R dh_installgsettings -a -O--buildsystem=R dh_bugfiles -a -O--buildsystem=R dh_ucf -a -O--buildsystem=R dh_lintian -a -O--buildsystem=R dh_gconf -a -O--buildsystem=R dh_icons -a -O--buildsystem=R dh_perl -a -O--buildsystem=R dh_usrlocal -a -O--buildsystem=R dh_link -a -O--buildsystem=R dh_installwm -a -O--buildsystem=R dh_installxfonts -a -O--buildsystem=R dh_strip_nondeterminism -a -O--buildsystem=R dh_compress -a -O--buildsystem=R dh_fixperms -a -O--buildsystem=R dh_missing -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -a -O--buildsystem=R dh_gencontrol -a -O--buildsystem=R dh_md5sums -a -O--buildsystem=R dh_builddeb -a -O--buildsystem=R INFO: pkgstriptranslations version 138.18.04.0 pkgstriptranslations: processing r-bioc-s4vectors (in debian/r-bioc-s4vectors); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/r-bioc-s4vectors/DEBIAN/control, package r-bioc-s4vectors, directory debian/r-bioc-s4vectors pkgstripfiles: Truncating usr/share/doc/r-bioc-s4vectors/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package r-bioc-s4vectors ... pkgstripfiles: No PNG files. dpkg-deb: building package 'r-bioc-s4vectors' in '../r-bioc-s4vectors_0.16.0-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../r-bioc-s4vectors_0.16.0-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build r-bioc-s4vectors-0.16.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190224-1022 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ r-bioc-s4vectors_0.16.0-1_armhf.changes: ---------------------------------------- Format: 1.8 Date: Tue, 07 Nov 2017 17:44:21 +0100 Source: r-bioc-s4vectors Binary: r-bioc-s4vectors Architecture: armhf Version: 0.16.0-1 Distribution: bionic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: r-bioc-s4vectors - BioConductor S4 implementation of vectors and lists Changes: r-bioc-s4vectors (0.16.0-1) unstable; urgency=medium . * New upstream version * Bump versioned Build-Depends: r-bioc-biocgenerics (>= 0.23.3) Checksums-Sha1: 56765a228f4b49b441155c40dcf185a1cfa2da65 10931 r-bioc-s4vectors_0.16.0-1_armhf.buildinfo 24a48963554c406912703799cb7513265df75856 1161040 r-bioc-s4vectors_0.16.0-1_armhf.deb Checksums-Sha256: 2bcb7c470cb7c9971f7b16cb357597a9c65e66549bd3f222902da847b56ce788 10931 r-bioc-s4vectors_0.16.0-1_armhf.buildinfo f239eecd1b90a4a395a713adb01cec0172d5a9abb9d7cab1c3ec28748133526e 1161040 r-bioc-s4vectors_0.16.0-1_armhf.deb Files: d9fe51f258195830c84bc796223b8ac9 10931 gnu-r optional r-bioc-s4vectors_0.16.0-1_armhf.buildinfo 1a61d21e04a0597447ddfd3be0fc5f93 1161040 gnu-r optional r-bioc-s4vectors_0.16.0-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ r-bioc-s4vectors_0.16.0-1_armhf.deb ----------------------------------- new debian package, version 2.0. size 1161040 bytes: control archive=2292 bytes. 1183 bytes, 20 lines control 4185 bytes, 48 lines md5sums Package: r-bioc-s4vectors Version: 0.16.0-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1756 Depends: r-base-core (>= 3.4.4-1ubuntu1), r-api-3.4, r-bioc-biocgenerics (>= 0.23.3), libc6 (>= 2.7), libgcc1 (>= 1:3.5) Suggests: r-bioc-iranges, r-bioc-genomicranges, r-cran-matrix, r-bioc-shortread, r-bioc-graph, r-cran-data.table, r-cran-runit Section: gnu-r Priority: optional Homepage: https://bioconductor.org/packages/S4Vectors/ Description: BioConductor S4 implementation of vectors and lists The S4Vectors package defines the Vector and List virtual classes and a set of generic functions that extend the semantic of ordinary vectors and lists in R. Package developers can easily implement vector-like or list-like objects as concrete subclasses of Vector or List. 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