RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-013 3.19.0-31-generic #36-Ubuntu SMP Wed Oct 7 15:08:43 UTC 2015 aarch64 Buildd toolchain package versions: launchpad-buildd_135~177~ubuntu15.04.1 python-lpbuildd_135~177~ubuntu15.04.1 sbuild_0.65.2-1ubuntu2+ppa1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.6.0+bzr6595-6ubuntu1 dpkg-dev_1.17.25ubuntu1 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 23 Oct 01:58:39 ntpdate[1375]: adjust time server 10.211.37.1 offset -0.000554 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8159081', '/home/buildd/filecache-default/e4334328d0a439a5c9a1262cdf1f64d583863c1f'] Unpacking chroot for build PACKAGEBUILD-8159081 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8159081'] Mounting chroot for build PACKAGEBUILD-8159081 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8159081', 'deb http://ftpmaster.internal/ubuntu wily main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-security main restricted universe multiverse', 'deb http://ftpmaster.internal/ubuntu wily-updates main restricted universe multiverse'] Overriding sources.list in build-PACKAGEBUILD-8159081 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8159081', 'arm64'] Updating debian chroot for build PACKAGEBUILD-8159081 Hit http://ftpmaster.internal wily InRelease Get:1 http://ftpmaster.internal wily-security InRelease [64.4 kB] Get:2 http://ftpmaster.internal wily-updates InRelease [64.4 kB] Hit http://ftpmaster.internal wily/main arm64 Packages Hit http://ftpmaster.internal wily/restricted arm64 Packages Hit http://ftpmaster.internal wily/universe arm64 Packages Hit http://ftpmaster.internal wily/multiverse arm64 Packages Hit http://ftpmaster.internal wily/main Translation-en Hit http://ftpmaster.internal wily/multiverse Translation-en Hit http://ftpmaster.internal wily/restricted Translation-en Hit http://ftpmaster.internal wily/universe Translation-en Get:3 http://ftpmaster.internal wily-security/main arm64 Packages [28 B] Get:4 http://ftpmaster.internal wily-security/restricted arm64 Packages [28 B] Get:5 http://ftpmaster.internal wily-security/universe arm64 Packages [28 B] Get:6 http://ftpmaster.internal wily-security/multiverse arm64 Packages [28 B] Get:7 http://ftpmaster.internal wily-security/main Translation-en [833 B] Get:8 http://ftpmaster.internal wily-security/multiverse Translation-en [28 B] Get:9 http://ftpmaster.internal wily-security/restricted Translation-en [28 B] Get:10 http://ftpmaster.internal wily-security/universe Translation-en [334 B] Get:11 http://ftpmaster.internal wily-updates/main arm64 Packages [1223 B] Get:12 http://ftpmaster.internal wily-updates/restricted arm64 Packages [28 B] Get:13 http://ftpmaster.internal wily-updates/universe arm64 Packages [609 B] Get:14 http://ftpmaster.internal wily-updates/multiverse arm64 Packages [28 B] Get:15 http://ftpmaster.internal wily-updates/main Translation-en [1028 B] Get:16 http://ftpmaster.internal wily-updates/multiverse Translation-en [28 B] Get:17 http://ftpmaster.internal wily-updates/restricted Translation-en [28 B] Get:18 http://ftpmaster.internal wily-updates/universe Translation-en [418 B] Fetched 134 kB in 3s (37.1 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8159081', 'arm64', 'wily', '-c', 'chroot:autobuild', '--arch=arm64', '--dist=wily', '--purge=never', '--nolog', '-A', 'fastx-toolkit_0.0.14-1build1.dsc'] Initiating build PACKAGEBUILD-8159081 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-31-generic #36-Ubuntu SMP Wed Oct 7 15:08:43 UTC 2015 aarch64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bos01-arm64-013.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ fastx-toolkit 0.0.14-1build1 (arm64) 23 Oct 2015 01:58 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: fastx-toolkit Version: 0.0.14-1build1 Source Version: 0.0.14-1build1 Distribution: wily Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/fastx-toolkit-qSDtM0/fastx-toolkit-0.0.14' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/fastx-toolkit-qSDtM0' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8159081/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── fastx-toolkit_0.0.14-1build1.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-QpmCTd/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/772 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11579 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), automake, autotools-dev, libtool, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), automake, autotools-dev, libtool, pkg-config, libgtextutils-dev, help2man, libgd-graph-perl, libperlio-gzip-perl dpkg-deb: building package 'sbuild-build-depends-fastx-toolkit-dummy' in '/«BUILDDIR»/resolver-zMrZpM/apt_archive/sbuild-build-depends-fastx-toolkit-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install fastx-toolkit build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base help2man intltool-debian libasprintf0v5 libcroco3 libexpat1 libfontconfig1 libfreetype6 libgd-graph-perl libgd-perl libgd-text-perl libgd3 libglib2.0-0 libgtextutils-dev libgtextutils0v5 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 liblocale-gettext-perl libmagic1 libperlio-gzip-perl libpipeline1 libsigsegv2 libtiff5 libtool libunistring0 libvpx2 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db pkg-config po-debconf ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois vacation dh-make gettext-doc groff fonts-dustin libgd-tools libtool-doc automaken gfortran fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autotools-dev bsdmainutils debhelper file fontconfig-config fonts-dejavu-core gettext gettext-base groff-base help2man intltool-debian libasprintf0v5 libcroco3 libexpat1 libfontconfig1 libfreetype6 libgd-graph-perl libgd-perl libgd-text-perl libgd3 libglib2.0-0 libgtextutils-dev libgtextutils0v5 libicu55 libjbig0 libjpeg-turbo8 libjpeg8 liblocale-gettext-perl libmagic1 libperlio-gzip-perl libpipeline1 libsigsegv2 libtiff5 libtool libunistring0 libvpx2 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 libxpm4 m4 man-db pkg-config po-debconf sbuild-build-depends-fastx-toolkit-dummy ucf 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB/18.7 MB of archives. After this operation, 72.4 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-fastx-toolkit-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ wily/main liblocale-gettext-perl arm64 1.05-9 [17.5 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0v5 arm64 0.19.4-1ubuntu3 [6680 B] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libxau6 arm64 1:1.0.8-1 [7590 B] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libxdmcp6 arm64 1:1.1.2-1 [10.2 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main groff-base arm64 1.22.3-1 [1145 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils arm64 9.0.6ubuntu1 [171 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 arm64 1.4.1-1 [21.9 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main man-db arm64 2.7.4-1 [832 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 arm64 2.46.1-1 [917 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libicu55 arm64 55.1-4ubuntu1 [7490 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libxml2 arm64 2.9.2+zdfsg1-4 [560 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 arm64 0.6.8-3 [67.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main fonts-dejavu-core all 2.35-1 [1039 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main ucf all 3.0030 [55.5 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main fontconfig-config all 2.11.1-0ubuntu6 [48.7 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libexpat1 arm64 2.1.0-7 [58.8 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libfreetype6 arm64 2.5.2-4ubuntu2 [264 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main libfontconfig1 arm64 2.11.1-0ubuntu6 [111 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main libjpeg-turbo8 arm64 1.3.0-0ubuntu2 [80.2 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main libsigsegv2 arm64 2.10-4 [13.3 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libjbig0 arm64 2.1-3.1 [23.8 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:23 http://ftpmaster.internal/ubuntu/ wily/main libtiff5 arm64 4.0.3-12.3ubuntu2 [122 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 arm64 0.9.3-5.2ubuntu1 [251 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main libxcb1 arm64 1.11-0ubuntu1 [33.4 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main libx11-data all 2:1.6.3-1ubuntu2 [113 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libx11-6 arm64 2:1.6.3-1ubuntu2 [512 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libxpm4 arm64 1:3.5.11-1 [28.2 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 arm64 1:5.22+15-2ubuntu1 [203 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main file arm64 1:5.22+15-2ubuntu1 [20.8 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main gettext-base arm64 0.19.4-1ubuntu3 [45.8 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main m4 arm64 1.4.17-4 [182 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main autoconf all 2.69-8 [321 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main autotools-dev all 20140911.1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main automake all 1:1.15-1ubuntu1 [511 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main gettext arm64 0.19.4-1ubuntu3 [794 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150811ubuntu2 [732 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main help2man arm64 1.47.2 [111 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main libvpx2 arm64 1.4.0-4 [541 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libgd3 arm64 2.1.1-4build1 [103 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/universe libgtextutils0v5 arm64 0.7-3 [19.0 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/universe libgtextutils-dev arm64 0.7-3 [23.1 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main libperlio-gzip-perl arm64 0.18-3build1 [14.1 kB] Get:46 http://ftpmaster.internal/ubuntu/ wily/main libtool all 2.4.2-1.11 [180 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily/main pkg-config arm64 0.28-1ubuntu1 [38.4 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily/main libgd-perl arm64 2.53-1build1 [162 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily/main libgd-text-perl all 0.86-9 [36.3 kB] Get:50 http://ftpmaster.internal/ubuntu/ wily/main libgd-graph-perl all 1.48-2 [379 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.7 MB in 2s (7632 kB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11579 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.05-9_arm64.deb ... Unpacking liblocale-gettext-perl (1.05-9) ... Selecting previously unselected package libasprintf0v5:arm64. Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_arm64.deb ... Unpacking libasprintf0v5:arm64 (0.19.4-1ubuntu3) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../libxau6_1%3a1.0.8-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../libxdmcp6_1%3a1.1.2-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_arm64.deb ... Unpacking groff-base (1.22.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_arm64.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../libpipeline1_1.4.1-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.4-1_arm64.deb ... Unpacking man-db (2.7.4-1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../libglib2.0-0_2.46.1-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.46.1-1) ... Selecting previously unselected package libicu55:arm64. Preparing to unpack .../libicu55_55.1-4ubuntu1_arm64.deb ... Unpacking libicu55:arm64 (55.1-4ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4_arm64.deb ... Unpacking libxml2:arm64 (2.9.2+zdfsg1-4) ... Selecting previously unselected package libcroco3:arm64. Preparing to unpack .../libcroco3_0.6.8-3_arm64.deb ... Unpacking libcroco3:arm64 (0.6.8-3) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../fonts-dejavu-core_2.35-1_all.deb ... Unpacking fonts-dejavu-core (2.35-1) ... Selecting previously unselected package ucf. Preparing to unpack .../archives/ucf_3.0030_all.deb ... Moving old data out of the way Unpacking ucf (3.0030) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../fontconfig-config_2.11.1-0ubuntu6_all.deb ... Unpacking fontconfig-config (2.11.1-0ubuntu6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.1.0-7_arm64.deb ... Unpacking libexpat1:arm64 (2.1.0-7) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../libfreetype6_2.5.2-4ubuntu2_arm64.deb ... Unpacking libfreetype6:arm64 (2.5.2-4ubuntu2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../libfontconfig1_2.11.1-0ubuntu6_arm64.deb ... Unpacking libfontconfig1:arm64 (2.11.1-0ubuntu6) ... Selecting previously unselected package libjpeg-turbo8:arm64. Preparing to unpack .../libjpeg-turbo8_1.3.0-0ubuntu2_arm64.deb ... Unpacking libjpeg-turbo8:arm64 (1.3.0-0ubuntu2) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../libsigsegv2_2.10-4_arm64.deb ... Unpacking libsigsegv2:arm64 (2.10-4) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../libjbig0_2.1-3.1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1) ... Selecting previously unselected package libjpeg8:arm64. Preparing to unpack .../libjpeg8_8c-2ubuntu8_arm64.deb ... Unpacking libjpeg8:arm64 (8c-2ubuntu8) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../libtiff5_4.0.3-12.3ubuntu2_arm64.deb ... Unpacking libtiff5:arm64 (4.0.3-12.3ubuntu2) ... Selecting previously unselected package libunistring0:arm64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_arm64.deb ... Unpacking libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../libxcb1_1.11-0ubuntu1_arm64.deb ... Unpacking libxcb1:arm64 (1.11-0ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.3-1ubuntu2_all.deb ... Unpacking libx11-data (2:1.6.3-1ubuntu2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../libx11-6_2%3a1.6.3-1ubuntu2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.6.3-1ubuntu2) ... Selecting previously unselected package libxpm4:arm64. Preparing to unpack .../libxpm4_1%3a3.5.11-1_arm64.deb ... Unpacking libxpm4:arm64 (1:3.5.11-1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../libmagic1_1%3a5.22+15-2ubuntu1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.22+15-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2ubuntu1_arm64.deb ... Unpacking file (1:5.22+15-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.4-1ubuntu3_arm64.deb ... Unpacking gettext-base (0.19.4-1ubuntu3) ... Selecting previously unselected package m4. Preparing to unpack .../archives/m4_1.4.17-4_arm64.deb ... Unpacking m4 (1.4.17-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../autoconf_2.69-8_all.deb ... Unpacking autoconf (2.69-8) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20140911.1_all.deb ... Unpacking autotools-dev (20140911.1) ... Selecting previously unselected package automake. Preparing to unpack .../automake_1%3a1.15-1ubuntu1_all.deb ... Unpacking automake (1:1.15-1ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.4-1ubuntu3_arm64.deb ... Unpacking gettext (0.19.4-1ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ... Unpacking intltool-debian (0.35.0+20060710.2) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20150811ubuntu2_all.deb ... Unpacking debhelper (9.20150811ubuntu2) ... Selecting previously unselected package help2man. Preparing to unpack .../help2man_1.47.2_arm64.deb ... Unpacking help2man (1.47.2) ... Selecting previously unselected package libvpx2:arm64. Preparing to unpack .../libvpx2_1.4.0-4_arm64.deb ... Unpacking libvpx2:arm64 (1.4.0-4) ... Selecting previously unselected package libgd3:arm64. Preparing to unpack .../libgd3_2.1.1-4build1_arm64.deb ... Unpacking libgd3:arm64 (2.1.1-4build1) ... Selecting previously unselected package libgtextutils0v5:arm64. Preparing to unpack .../libgtextutils0v5_0.7-3_arm64.deb ... Unpacking libgtextutils0v5:arm64 (0.7-3) ... Selecting previously unselected package libgtextutils-dev:arm64. Preparing to unpack .../libgtextutils-dev_0.7-3_arm64.deb ... Unpacking libgtextutils-dev:arm64 (0.7-3) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../libperlio-gzip-perl_0.18-3build1_arm64.deb ... Unpacking libperlio-gzip-perl (0.18-3build1) ... 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Setting up liblocale-gettext-perl (1.05-9) ... Setting up libasprintf0v5:arm64 (0.19.4-1ubuntu3) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-1) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:arm64 (1.4.1-1) ... Setting up man-db (2.7.4-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libglib2.0-0:arm64 (2.46.1-1) ... No schema files found: doing nothing. Setting up libicu55:arm64 (55.1-4ubuntu1) ... Setting up libxml2:arm64 (2.9.2+zdfsg1-4) ... Setting up libcroco3:arm64 (0.6.8-3) ... Setting up fonts-dejavu-core (2.35-1) ... Setting up ucf (3.0030) ... Setting up fontconfig-config (2.11.1-0ubuntu6) ... Setting up libexpat1:arm64 (2.1.0-7) ... Setting up libfreetype6:arm64 (2.5.2-4ubuntu2) ... Setting up libfontconfig1:arm64 (2.11.1-0ubuntu6) ... Setting up libjpeg-turbo8:arm64 (1.3.0-0ubuntu2) ... Setting up libsigsegv2:arm64 (2.10-4) ... Setting up libjbig0:arm64 (2.1-3.1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libtiff5:arm64 (4.0.3-12.3ubuntu2) ... Setting up libunistring0:arm64 (0.9.3-5.2ubuntu1) ... Setting up libxcb1:arm64 (1.11-0ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu2) ... Setting up libx11-6:arm64 (2:1.6.3-1ubuntu2) ... Setting up libxpm4:arm64 (1:3.5.11-1) ... Setting up libmagic1:arm64 (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-8) ... Setting up autotools-dev (20140911.1) ... Setting up automake (1:1.15-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150811ubuntu2) ... Setting up help2man (1.47.2) ... Setting up libvpx2:arm64 (1.4.0-4) ... Setting up libgd3:arm64 (2.1.1-4build1) ... Setting up libgtextutils0v5:arm64 (0.7-3) ... Setting up libgtextutils-dev:arm64 (0.7-3) ... Setting up libperlio-gzip-perl (0.18-3build1) ... Setting up libtool (2.4.2-1.11) ... Setting up pkg-config (0.28-1ubuntu1) ... Setting up libgd-perl (2.53-1build1) ... Setting up libgd-text-perl (0.86-9) ... Setting up libgd-graph-perl (1.48-2) ... Setting up sbuild-build-depends-fastx-toolkit-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-31-generic arm64 (aarch64) Toolchain package versions: binutils_2.25.1-6ubuntu1 dpkg-dev_1.18.2ubuntu5 g++-5_5.2.1-22ubuntu2 gcc-5_5.2.1-22ubuntu2 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-22ubuntu2 libstdc++6_5.2.1-22ubuntu2 linux-libc-dev_4.2.0-16.19 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.10.2ubuntu1 apt-transport-https_1.0.10.2ubuntu1 autoconf_2.69-8 automake_1:1.15-1ubuntu1 autotools-dev_20140911.1 base-files_7.2ubuntu11 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.1-6ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-3ubuntu1 cpp-5_5.2.1-22ubuntu2 dash_0.5.7-4ubuntu2 debconf_1.5.57ubuntu1 debhelper_9.20150811ubuntu2 debianutils_4.5.1 diffutils_1:3.3-1 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.2ubuntu5 dpkg-dev_1.18.2ubuntu5 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 fakeroot_1.20.2-1ubuntu1 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 fontconfig-config_2.11.1-0ubuntu6 fonts-dejavu-core_2.35-1 g++_4:5.2.1-3ubuntu1 g++-5_5.2.1-22ubuntu2 gcc_4:5.2.1-3ubuntu1 gcc-5_5.2.1-22ubuntu2 gcc-5-base_5.2.1-22ubuntu2 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4ubuntu1 help2man_1.47.2 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu6 libapt-pkg4.16_1.0.10.2ubuntu1 libasan2_5.2.1-22ubuntu2 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-22ubuntu2 libattr1_1:2.4.47-2 libaudit-common_1:2.4.2-1ubuntu1 libaudit1_1:2.4.2-1ubuntu1 libblkid1_2.26.2-6ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-9 libcap2-bin_1:2.24-9 libcc1-0_5.2.1-22ubuntu2 libcomerr2_1.42.12-1ubuntu2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.43.0-1ubuntu2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.0-1ubuntu1 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.2ubuntu5 libexpat1_2.1.0-7 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu3 libffi6_3.2.1-3 libfontconfig1_2.11.1-0ubuntu6 libfreetype6_2.5.2-4ubuntu2 libgcc-5-dev_5.2.1-22ubuntu2 libgcc1_1:5.2.1-22ubuntu2 libgcrypt20_1.6.3-2ubuntu1 libgd-graph-perl_1.48-2 libgd-perl_2.53-1build1 libgd-text-perl_0.86-9 libgd3_2.1.1-4build1 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.1-1 libgmp10_2:6.0.0+dfsg-7 libgnutls-deb0-28_3.3.15-5ubuntu2 libgomp1_5.2.1-22ubuntu2 libgpg-error0_1.19-2 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libgtextutils-dev_0.7-3 libgtextutils0v5_0.7-3 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-4ubuntu1 libidn11_1.28-1ubuntu2 libisl13_0.14-2 libitm1_5.2.1-22ubuntu2 libjbig0_2.1-3.1 libjpeg-turbo8_1.3.0-0ubuntu2 libjpeg8_8c-2ubuntu8 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblocale-gettext-perl_1.05-9 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libperlio-gzip-perl_0.18-3build1 libpipeline1_1.4.1-1 libpng12-0_1.2.51-0ubuntu3 libprocps3_1:3.3.9-1ubuntu8 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.3-2build1 libsemanage-common_2.3-1build2 libsemanage1_2.3-1build2 libsepol1_2.3-2 libsigsegv2_2.10-4 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.26.2-6ubuntu3 libsqlite3-0_3.8.11.1-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2d-0ubuntu1 libstdc++-5-dev_5.2.1-22ubuntu2 libstdc++6_5.2.1-22ubuntu2 libsystemd0_225-1ubuntu9 libtasn1-6_4.5-2 libtiff5_4.0.3-12.3ubuntu2 libtinfo5_5.9+20150516-2ubuntu1 libtool_2.4.2-1.11 libubsan0_5.2.1-22ubuntu2 libudev1_225-1ubuntu9 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu3 libvpx2_1.4.0-4 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libx11-6_2:1.6.3-1ubuntu2 libx11-data_2:1.6.3-1ubuntu2 libxau6_1:1.0.8-1 libxcb1_1.11-0ubuntu1 libxdmcp6_1:1.1.2-1 libxml2_2.9.2+zdfsg1-4 libxpm4_1:3.5.11-1 linux-libc-dev_4.2.0-16.19 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_4.1+Debian11ubuntu8 m4_1.4.17-4 make_4.0-8.2 man-db_2.7.4-1 mawk_1.3.3-17ubuntu2 mount_2.26.2-6ubuntu3 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-config_0.28-1ubuntu1 pkg-create-dbgsym_0.69 pkgbinarymangler_122 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-fastx-toolkit-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_225-1ubuntu9 systemd-sysv_225-1ubuntu9 sysv-rc_2.88dsf-59.2ubuntu2 sysvinit-utils_2.88dsf-59.2ubuntu2 tar_1.27.1-2 tzdata_2015g-1 ubuntu-keyring_2012.05.19 ucf_3.0030 udev_225-1ubuntu9 util-linux_2.26.2-6ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Thu Aug 13 00:58:16 2015 UTC using RSA key ID 21B2133D gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./fastx-toolkit_0.0.14-1build1.dsc dpkg-source: info: extracting fastx-toolkit in fastx-toolkit-0.0.14 dpkg-source: info: unpacking fastx-toolkit_0.0.14.orig.tar.gz dpkg-source: info: unpacking fastx-toolkit_0.0.14-1build1.debian.tar.xz Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package fastx-toolkit dpkg-buildpackage: source version 0.0.14-1build1 dpkg-buildpackage: source distribution wily dpkg-source --before-build fastx-toolkit-0.0.14 dpkg-buildpackage: host architecture arm64 fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir dh_auto_clean dh_autotools-dev_restoreconfig for c_g in `find . -type f -name config.guess` ; do if test -e "$c_g.dh-orig" ; then mv -f "$c_g.dh-orig" "$c_g" ; fi ; done for c_s in `find . -type f -name config.sub` ; do if test -e "$c_s.dh-orig" ; then mv -f "$c_s.dh-orig" "$c_s" ; fi ; done find . -type f \( -name config.guess.dh-orig -o -name config.sub.dh-orig \) -delete dh_clean rm -f debian/fastx-toolkit.substvars rm -f debian/fastx-toolkit.*.debhelper rm -rf debian/fastx-toolkit/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build dh build --with autotools_dev dh_testdir dh_autotools-dev_updateconfig for c_g in `find -type f -name config.guess` ; do if ! test -e "$c_g.dh-orig" ; then mv -f "$c_g" "$c_g.dh-orig" ; cp -f /usr/share/misc/config.guess "$c_g" ; fi ; done for c_s in `find -type f -name config.sub` ; do if ! test -e "$c_s.dh-orig" ; then mv -f "$c_s" "$c_s.dh-orig" ; cp -f /usr/share/misc/config.sub "$c_s" ; fi ; done debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' ./reconf - libtoolize. libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, `config'. libtoolize: linking file `config/config.guess' libtoolize: linking file `config/config.sub' libtoolize: linking file `config/install-sh' libtoolize: linking file `config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'. libtoolize: linking file `m4/libtool.m4' libtoolize: linking file `m4/ltoptions.m4' libtoolize: linking file `m4/ltsugar.m4' libtoolize: linking file `m4/ltversion.m4' libtoolize: linking file `m4/lt~obsolete.m4' - aclocal. - autoconf. - autoheader. - automake. configure.ac:20: installing 'config/compile' configure.ac:18: installing 'config/missing' Makefile.am: installing './INSTALL' src/fasta_formatter/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for long long int... yes checking for ISO C++ TR1 include files... yes checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=c++11... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GTEXTUTILS... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/libfastx/Makefile config.status: creating src/fastx_clipper/Makefile config.status: creating src/fastq_to_fasta/Makefile config.status: creating src/fastx_quality_stats/Makefile config.status: creating src/fastq_quality_converter/Makefile config.status: creating src/fastx_trimmer/Makefile config.status: creating src/fastq_quality_filter/Makefile config.status: creating src/fastq_quality_trimmer/Makefile config.status: creating src/fastx_artifacts_filter/Makefile config.status: creating src/fastx_reverse_complement/Makefile config.status: creating src/fastx_collapser/Makefile config.status: creating src/fastx_uncollapser/Makefile config.status: creating src/seqalign_test/Makefile config.status: creating src/fasta_formatter/Makefile config.status: creating src/fasta_nucleotide_changer/Makefile config.status: creating src/fastx_renamer/Makefile config.status: creating src/fastq_masker/Makefile config.status: creating galaxy/Makefile config.status: creating galaxy/tools/Makefile config.status: creating galaxy/tools/fastx_toolkit/Makefile config.status: creating galaxy/test-data/Makefile config.status: creating galaxy/static/Makefile config.status: creating galaxy/static/fastx_icons/Makefile config.status: creating galaxy/tool-data/Makefile config.status: creating scripts/Makefile config.status: creating build_scripts/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_build make -j1 make[1]: Entering directory '/«PKGBUILDDIR»' make all-recursive make[2]: Entering directory '/«PKGBUILDDIR»' Making all in m4 make[3]: Entering directory '/«PKGBUILDDIR»/m4' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/m4' Making all in src make[3]: Entering directory '/«PKGBUILDDIR»/src' Making all in libfastx make[4]: Entering directory '/«PKGBUILDDIR»/src/libfastx' gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o chomp.o chomp.c gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx.o fastx.c gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_args.o fastx_args.c g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o sequence_alignment.o sequence_alignment.cpp rm -f libfastx.a ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/libfastx' Making all in fastx_clipper make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_clipper' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_clipper.o fastx_clipper.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_clipper' Making all in fastx_trimmer make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_trimmer.o fastx_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_trimmer' Making all in fastx_quality_stats make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_quality_stats' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_quality_stats.o fastx_quality_stats.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_quality_stats' Making all in fastq_quality_converter make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_converter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_converter.o fastq_quality_converter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_converter' Making all in fastq_to_fasta make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_to_fasta' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_to_fasta.o fastq_to_fasta.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_to_fasta' Making all in fastq_quality_filter make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_filter.o fastq_quality_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_filter' Making all in fastq_quality_trimmer make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_quality_trimmer.o fastq_quality_trimmer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' Making all in fastx_artifacts_filter make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_artifacts_filter.o fastx_artifacts_filter.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' Making all in fastx_reverse_complement make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_reverse_complement.o fastx_reverse_complement.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' Making all in fastx_collapser make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_collapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_collapser.o fastx_collapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_collapser' Making all in fastx_uncollapser make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_uncollapser' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_uncollapser.o fastx_uncollapser.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_uncollapser fastx_uncollapser.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_uncollapser' Making all in seqalign_test make[4]: Entering directory '/«PKGBUILDDIR»/src/seqalign_test' g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o seqalign_test.o seqalign_test.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o seqalign_test seqalign_test.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/seqalign_test' Making all in fasta_formatter make[4]: Entering directory '/«PKGBUILDDIR»/src/fasta_formatter' g++ -DHAVE_CONFIG_H -I. -I../.. -I/usr/include/gtextutils -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_formatter.o fasta_formatter.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a libtool: link: g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fasta_formatter fasta_formatter.o -lgtextutils ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fasta_formatter' Making all in fasta_nucleotide_changer make[4]: Entering directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' Making all in fastx_renamer make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_renamer' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastx_renamer.o fastx_renamer.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_renamer' Making all in fastq_masker make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_masker' gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -c -o fastq_masker.o fastq_masker.c /bin/bash ../../libtool --tag=CC --mode=link gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a libtool: link: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -o fastq_masker fastq_masker.o ../libfastx/libfastx.a make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_masker' make[4]: Entering directory '/«PKGBUILDDIR»/src' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[3]: Leaving directory '/«PKGBUILDDIR»/src' Making all in doc make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc' Making all in galaxy make[3]: Entering directory '/«PKGBUILDDIR»/galaxy' Making all in tools make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/tools' Making all in fastx_toolkit make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/tools' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools' make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools' Making all in test-data make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/test-data' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/test-data' Making all in static make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/static' Making all in fastx_icons make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/static' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/static' make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/static' Making all in tool-data make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/tool-data' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/tool-data' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy' Making all in scripts make[3]: Entering directory '/«PKGBUILDDIR»/scripts' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/scripts' Making all in build_scripts make[3]: Entering directory '/«PKGBUILDDIR»/build_scripts' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/build_scripts' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_test make -j1 check make[1]: Entering directory '/«PKGBUILDDIR»' Making check in m4 make[2]: Entering directory '/«PKGBUILDDIR»/m4' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/m4' Making check in src make[2]: Entering directory '/«PKGBUILDDIR»/src' Making check in libfastx make[3]: Entering directory '/«PKGBUILDDIR»/src/libfastx' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/libfastx' Making check in fastx_clipper make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_clipper' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_clipper' Making check in fastx_trimmer make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_trimmer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_trimmer' Making check in fastx_quality_stats make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_quality_stats' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_quality_stats' Making check in fastq_quality_converter make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_converter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_converter' Making check in fastq_to_fasta make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_to_fasta' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_to_fasta' Making check in fastq_quality_filter make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_filter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_filter' Making check in fastq_quality_trimmer make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' Making check in fastx_artifacts_filter make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' Making check in fastx_reverse_complement make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' Making check in fastx_collapser make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_collapser' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_collapser' Making check in fastx_uncollapser make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_uncollapser' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_uncollapser' Making check in seqalign_test make[3]: Entering directory '/«PKGBUILDDIR»/src/seqalign_test' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/seqalign_test' Making check in fasta_formatter make[3]: Entering directory '/«PKGBUILDDIR»/src/fasta_formatter' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fasta_formatter' Making check in fasta_nucleotide_changer make[3]: Entering directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' Making check in fastx_renamer make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_renamer' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_renamer' Making check in fastq_masker make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_masker' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_masker' make[3]: Entering directory '/«PKGBUILDDIR»/src' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making check in doc make[2]: Entering directory '/«PKGBUILDDIR»/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/doc' Making check in galaxy make[2]: Entering directory '/«PKGBUILDDIR»/galaxy' Making check in tools make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/tools' Making check in fastx_toolkit make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/tools' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools' Making check in test-data make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/test-data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/test-data' Making check in static make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/static' Making check in fastx_icons make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/static' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/static' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/static' Making check in tool-data make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/tool-data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/tool-data' make[3]: Entering directory '/«PKGBUILDDIR»/galaxy' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy' make[2]: Leaving directory '/«PKGBUILDDIR»/galaxy' Making check in scripts make[2]: Entering directory '/«PKGBUILDDIR»/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/scripts' Making check in build_scripts make[2]: Entering directory '/«PKGBUILDDIR»/build_scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/«PKGBUILDDIR»/build_scripts' make[2]: Entering directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary --with autotools_dev dh_testroot dh_prep rm -f debian/fastx-toolkit.substvars rm -f debian/fastx-toolkit.*.debhelper rm -rf debian/fastx-toolkit/ dh_auto_install install -d debian/fastx-toolkit make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/fastx-toolkit AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' Making install in m4 make[2]: Entering directory '/«PKGBUILDDIR»/m4' make[3]: Entering directory '/«PKGBUILDDIR»/m4' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/aclocal' /usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_compile_stdcxx_11.m4 ax_cxx_header_stdcxx_tr1.m4 '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/aclocal' make[3]: Leaving directory '/«PKGBUILDDIR»/m4' make[2]: Leaving directory '/«PKGBUILDDIR»/m4' Making install in src make[2]: Entering directory '/«PKGBUILDDIR»/src' Making install in libfastx make[3]: Entering directory '/«PKGBUILDDIR»/src/libfastx' make[4]: Entering directory '/«PKGBUILDDIR»/src/libfastx' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/libfastx' make[3]: Leaving directory '/«PKGBUILDDIR»/src/libfastx' Making install in fastx_clipper make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_clipper' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_clipper' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_clipper /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_clipper make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_clipper' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_clipper' Making install in fastx_trimmer make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_trimmer' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_trimmer' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_trimmer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_trimmer' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_trimmer' Making install in fastx_quality_stats make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_quality_stats' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_quality_stats' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_quality_stats /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_quality_stats make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_quality_stats' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_quality_stats' Making install in fastq_quality_converter make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_converter' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_converter' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_converter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_converter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_converter' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_converter' Making install in fastq_to_fasta make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_to_fasta' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_to_fasta' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_to_fasta /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_to_fasta make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_to_fasta' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_to_fasta' Making install in fastq_quality_filter make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_filter' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_filter' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_filter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_filter' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_filter' Making install in fastq_quality_trimmer make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_quality_trimmer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_trimmer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_quality_trimmer' Making install in fastx_artifacts_filter make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_artifacts_filter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_artifacts_filter' Making install in fastx_reverse_complement make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_reverse_complement /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_reverse_complement make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_reverse_complement' Making install in fastx_collapser make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_collapser' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_collapser' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_collapser /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_collapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_collapser' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_collapser' Making install in fastx_uncollapser make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_uncollapser' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_uncollapser' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_uncollapser /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_uncollapser make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_uncollapser' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_uncollapser' Making install in seqalign_test make[3]: Entering directory '/«PKGBUILDDIR»/src/seqalign_test' make[4]: Entering directory '/«PKGBUILDDIR»/src/seqalign_test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/seqalign_test' make[3]: Leaving directory '/«PKGBUILDDIR»/src/seqalign_test' Making install in fasta_formatter make[3]: Entering directory '/«PKGBUILDDIR»/src/fasta_formatter' make[4]: Entering directory '/«PKGBUILDDIR»/src/fasta_formatter' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_formatter /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_formatter make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fasta_formatter' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fasta_formatter' Making install in fasta_nucleotide_changer make[3]: Entering directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' make[4]: Entering directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fasta_nucleotide_changer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fasta_nucleotide_changer' Making install in fastx_renamer make[3]: Entering directory '/«PKGBUILDDIR»/src/fastx_renamer' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastx_renamer' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastx_renamer /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_renamer make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastx_renamer' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastx_renamer' Making install in fastq_masker make[3]: Entering directory '/«PKGBUILDDIR»/src/fastq_masker' make[4]: Entering directory '/«PKGBUILDDIR»/src/fastq_masker' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c fastq_masker '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' libtool: install: /usr/bin/install -c fastq_masker /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_masker make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src/fastq_masker' make[3]: Leaving directory '/«PKGBUILDDIR»/src/fastq_masker' make[3]: Entering directory '/«PKGBUILDDIR»/src' make[4]: Entering directory '/«PKGBUILDDIR»/src' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/src' make[3]: Leaving directory '/«PKGBUILDDIR»/src' make[2]: Leaving directory '/«PKGBUILDDIR»/src' Making install in doc make[2]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Entering directory '/«PKGBUILDDIR»/doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/doc' make[2]: Leaving directory '/«PKGBUILDDIR»/doc' Making install in galaxy make[2]: Entering directory '/«PKGBUILDDIR»/galaxy' Making install in tools make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/tools' Making install in fastx_toolkit make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools/fastx_toolkit' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/tools' make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/tools' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools' make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/tools' Making install in test-data make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/test-data' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/test-data' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/test-data' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/test-data' Making install in static make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/static' Making install in fastx_icons make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/static/fastx_icons' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/static' make[5]: Entering directory '/«PKGBUILDDIR»/galaxy/static' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/«PKGBUILDDIR»/galaxy/static' make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/static' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/static' Making install in tool-data make[3]: Entering directory '/«PKGBUILDDIR»/galaxy/tool-data' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy/tool-data' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy/tool-data' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy/tool-data' make[3]: Entering directory '/«PKGBUILDDIR»/galaxy' make[4]: Entering directory '/«PKGBUILDDIR»/galaxy' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/«PKGBUILDDIR»/galaxy' make[3]: Leaving directory '/«PKGBUILDDIR»/galaxy' make[2]: Leaving directory '/«PKGBUILDDIR»/galaxy' Making install in scripts make[2]: Entering directory '/«PKGBUILDDIR»/scripts' make[3]: Entering directory '/«PKGBUILDDIR»/scripts' /bin/mkdir -p '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' /usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/scripts' make[2]: Leaving directory '/«PKGBUILDDIR»/scripts' Making install in build_scripts make[2]: Entering directory '/«PKGBUILDDIR»/build_scripts' make[3]: Entering directory '/«PKGBUILDDIR»/build_scripts' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»/build_scripts' make[2]: Leaving directory '/«PKGBUILDDIR»/build_scripts' make[2]: Entering directory '/«PKGBUILDDIR»' make[3]: Entering directory '/«PKGBUILDDIR»' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/«PKGBUILDDIR»' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_install make[1]: Entering directory '/«PKGBUILDDIR»' dh_install rm --recursive /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/aclocal make[1]: Leaving directory '/«PKGBUILDDIR»' dh_installdocs install -d debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a README debian/fastx-toolkit/usr/share/doc/fastx-toolkit cp --reflink=auto -a THANKS debian/fastx-toolkit/usr/share/doc/fastx-toolkit chown -R 0:0 debian/fastx-toolkit/usr/share/doc chmod -R go=rX debian/fastx-toolkit/usr/share/doc chmod -R u\+rw debian/fastx-toolkit/usr/share/doc install -p -m0644 debian/README.Debian debian/fastx-toolkit/usr/share/doc/fastx-toolkit/README.Debian install -p -m0644 debian/copyright debian/fastx-toolkit/usr/share/doc/fastx-toolkit/copyright debian/rules override_dh_installchangelogs make[1]: Entering directory '/«PKGBUILDDIR»' dh_installchangelogs -k NEWS install -p -m0644 debian/changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog.Debian install -p -m0644 debian/NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.Debian install -p -m0644 NEWS debian/fastx-toolkit/usr/share/doc/fastx-toolkit/changelog ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_installman make[1]: Entering directory '/«PKGBUILDDIR»' mkdir -p /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1 # The name strings are obtained from # http://hannonlab.cshl.edu/fastx_toolkit/ (Section "Available Tools") # and # http://hannonlab.cshl.edu/fastx_toolkit/commandline.html help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='changes the width of sequences line in a FASTA file' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_formatter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fasta_formatter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convets FASTA sequences from/to RNA/DNA' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fasta_nucleotide_changer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name="Masks nucleotides with 'N' (or other character) based on quality" \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_masker > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_masker.1 # FIXME: The tool `fasta_quality_converter` was NOT described at the URLs above help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Converts sequences based on quality' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_converter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_converter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Filters sequences based on quality' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_filter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_filter.1 dh_installman debian/fastq_quality_trimmer.1 install -p -m0644 debian/fastq_quality_trimmer.1 debian/fastx-toolkit/usr/share/man/man1/fastq_quality_trimmer.1 man --recode UTF-8 ./fasta_formatter\.1 > fasta_formatter\.1\.new chmod 644 fasta_formatter.1.new mv -f fasta_formatter.1.new fasta_formatter.1 man --recode UTF-8 ./fastq_quality_trimmer\.1 > fastq_quality_trimmer\.1\.new chmod 644 fastq_quality_trimmer.1.new mv -f fastq_quality_trimmer.1.new fastq_quality_trimmer.1 man --recode UTF-8 ./fastq_quality_filter\.1 > fastq_quality_filter\.1\.new chmod 644 fastq_quality_filter.1.new mv -f fastq_quality_filter.1.new fastq_quality_filter.1 man --recode UTF-8 ./fastq_masker\.1 > fastq_masker\.1\.new chmod 644 fastq_masker.1.new mv -f fastq_masker.1.new fastq_masker.1 man --recode UTF-8 ./fastq_quality_converter\.1 > fastq_quality_converter\.1\.new chmod 644 fastq_quality_converter.1.new mv -f fastq_quality_converter.1.new fastq_quality_converter.1 man --recode UTF-8 ./fasta_nucleotide_changer\.1 > fasta_nucleotide_changer\.1\.new chmod 644 fasta_nucleotide_changer.1.new mv -f fasta_nucleotide_changer.1.new fasta_nucleotide_changer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Convert FASTQ files to FASTA files' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_to_fasta > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_to_fasta.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Artifacts Filter' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_artifacts_filter > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_artifacts_filter.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Clipper' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_clipper > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_clipper.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Collapser' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_collapser > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_collapser.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Statistics' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_quality_stats > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_quality_stats.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Renamer' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_renamer > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_renamer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTQ/A Reverse Complement' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_reverse_complement > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_reverse_complement.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Trimmer' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_trimmer > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_trimmer.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Uncollapser' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_uncollapser > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_uncollapser.1 # Perl scripts add the full path to usage advise which needs to be removed # The script fasta_clipping_histogram.pl does not feature a '-h' option help2man --no-info --no-discard-stderr --version-string='0.0.14' -h '' \ --name='Create a Linker Clipping Information Histogram' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fasta_clipping_histogram.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fasta_clipping_histogram.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTX Barcode Splitter' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_barcode_splitter.pl | \ sed -e 's?^usage: .*\([^/]\+\.pl\)?usage: \1?' \ > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_barcode_splitter.pl.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='Solexa-Quality BoxPlot plotter' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastq_quality_boxplot_graph.sh > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_graph.sh > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 help2man --no-info --no-discard-stderr --version-string='0.0.14' --help-option='-h' \ --name='FASTA/Q Nucleotide Distribution Plotter' \ /«PKGBUILDDIR»/debian/fastx-toolkit/usr/bin/fastx_nucleotide_distribution_line_graph.sh > /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 for man in `find /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1 "*.1"` ; do cat debian/manpages_see_also >> $man ; done find: `*.1': No such file or directory /bin/sh: 1: cannot create /«PKGBUILDDIR»/debian/fastx-toolkit/usr/share/man/man1: Is a directory make[1]: Leaving directory '/«PKGBUILDDIR»' dh_perl (grep -s -v perl:Depends debian/fastx-toolkit.substvars; echo perl:Depends=perl) > debian/fastx-toolkit.substvars.new mv debian/fastx-toolkit.substvars.new debian/fastx-toolkit.substvars dh_link rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS ln -sf changelog debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS dh_compress cd debian/fastx-toolkit chmod a-x usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/changelog.Debian gzip -9nf usr/share/man/man1/fastx_collapser.1 usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1 usr/share/man/man1/fastq_quality_boxplot_graph.sh.1 usr/share/man/man1/fasta_formatter.1 usr/share/man/man1/fastx_quality_stats.1 usr/share/man/man1/fastq_quality_trimmer.1 usr/share/man/man1/fasta_clipping_histogram.pl.1 usr/share/man/man1/fastx_clipper.1 usr/share/man/man1/fastq_to_fasta.1 usr/share/man/man1/fastx_renamer.1 usr/share/man/man1/fastq_quality_filter.1 usr/share/man/man1/fastx_artifacts_filter.1 usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1 usr/share/man/man1/fastq_masker.1 usr/share/man/man1/fastx_barcode_splitter.pl.1 usr/share/man/man1/fastx_uncollapser.1 usr/share/man/man1/fastx_trimmer.1 usr/share/man/man1/fastq_quality_converter.1 usr/share/man/man1/fasta_nucleotide_changer.1 usr/share/man/man1/fastx_reverse_complement.1 usr/share/doc/fastx-toolkit/README usr/share/doc/fastx-toolkit/NEWS.Debian usr/share/doc/fastx-toolkit/changelog usr/share/doc/fastx-toolkit/changelog.Debian cd '/«PKGBUILDDIR»' rm -f debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS ln -sf changelog.gz debian/fastx-toolkit/usr/share/doc/fastx-toolkit/NEWS.gz dh_fixperms find debian/fastx-toolkit -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/fastx-toolkit ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastx-toolkit/usr/share/doc -type f ! -regex 'debian/fastx-toolkit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastx-toolkit/usr/share/man debian/fastx-toolkit/usr/man/ debian/fastx-toolkit/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastx-toolkit/usr/lib/aarch64-linux-gnu/perl5/5.20 debian/fastx-toolkit/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/fastx-toolkit/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastx-toolkit/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_strip dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: fastx-toolkit dh_strip debug symbol extraction: packages to act on: fastx-toolkit dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends} /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_masker strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_collapser strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_artifacts_filter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_uncollapser strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_trimmer strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_converter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_to_fasta strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fasta_formatter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_renamer strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_quality_stats strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_reverse_complement strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastq_quality_filter strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_trimmer strip --remove-section=.comment --remove-section=.note debian/fastx-toolkit/usr/bin/fastx_clipper dh_makeshlibs rm -f debian/fastx-toolkit/DEBIAN/shlibs dh_shlibdeps install -d debian/fastx-toolkit/DEBIAN dpkg-shlibdeps -Tdebian/fastx-toolkit.substvars debian/fastx-toolkit/usr/bin/fastq_masker debian/fastx-toolkit/usr/bin/fastx_collapser debian/fastx-toolkit/usr/bin/fastx_artifacts_filter debian/fastx-toolkit/usr/bin/fastx_uncollapser debian/fastx-toolkit/usr/bin/fastq_quality_trimmer debian/fastx-toolkit/usr/bin/fasta_nucleotide_changer debian/fastx-toolkit/usr/bin/fastq_quality_converter debian/fastx-toolkit/usr/bin/fastq_to_fasta debian/fastx-toolkit/usr/bin/fasta_formatter debian/fastx-toolkit/usr/bin/fastx_renamer debian/fastx-toolkit/usr/bin/fastx_quality_stats debian/fastx-toolkit/usr/bin/fastx_reverse_complement debian/fastx-toolkit/usr/bin/fastq_quality_filter debian/fastx-toolkit/usr/bin/fastx_trimmer debian/fastx-toolkit/usr/bin/fastx_clipper dh_installdeb dh_gencontrol echo misc:Depends= >> debian/fastx-toolkit.substvars echo misc:Pre-Depends= >> debian/fastx-toolkit.substvars dpkg-gencontrol -pfastx-toolkit -ldebian/changelog -Tdebian/fastx-toolkit.substvars -Pdebian/fastx-toolkit dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package fastx-toolkit: unused substitution variable ${perl:Depends} chmod 0644 debian/fastx-toolkit/DEBIAN/control chown 0:0 debian/fastx-toolkit/DEBIAN/control dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform arm64: fastx-toolkit dh_gencontrol debug symbol wrapper: packages to act on: fastx-toolkit dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package fastx-toolkit (pkgdir debian/fastx-toolkit, ddeb package dir debian/fastx-toolkit-dbgsym) dh_gencontrol debug symbol wrapper: building fastx-toolkit-dbgsym_0.0.14-1build1_arm64.ddeb dpkg-deb: building package 'fastx-toolkit-dbgsym' in '../fastx-toolkit-dbgsym_0.0.14-1build1_arm64.ddeb'. dh_md5sums (cd debian/fastx-toolkit >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 0644 debian/fastx-toolkit/DEBIAN/md5sums chown 0:0 debian/fastx-toolkit/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/fastx-toolkit .. INFO: pkgstriptranslations version 122 pkgstriptranslations: processing fastx-toolkit (in debian/fastx-toolkit); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/fastx-toolkit/DEBIAN/control, package fastx-toolkit, directory debian/fastx-toolkit .. removing usr/share/doc/fastx-toolkit/changelog.gz pkgstripfiles: PNG optimization for package fastx-toolkit took 0 s dpkg-deb: building package 'fastx-toolkit' in '../fastx-toolkit_0.0.14-1build1_arm64.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../fastx-toolkit_0.0.14-1build1_arm64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build fastx-toolkit-0.0.14 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151023-0200 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ fastx-toolkit_0.0.14-1build1_arm64.changes: ─────────────────────────────────────────── Format: 1.8 Date: Thu, 13 Aug 2015 00:58:12 +0000 Source: fastx-toolkit Binary: fastx-toolkit Architecture: arm64 Version: 0.0.14-1build1 Distribution: wily Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: fastx-toolkit - FASTQ/A short nucleotide reads pre-processing tools Changes: fastx-toolkit (0.0.14-1build1) wily; urgency=medium . * No-change rebuild against libgtextutils0v5 Checksums-Sha1: 279ae0b86b90b8b5933a848173638891cbdca314 85056 fastx-toolkit_0.0.14-1build1_arm64.deb Checksums-Sha256: 198f589613f6737e674783ed79ffad9c48eec90409d79820c118a06198c6cf49 85056 fastx-toolkit_0.0.14-1build1_arm64.deb Files: 0e022fe48e4ccc1f3d51d573b122cae7 85056 science optional fastx-toolkit_0.0.14-1build1_arm64.deb Original-Maintainer: Debian Med Packaging Team ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ fastx-toolkit_0.0.14-1build1_arm64.deb ────────────────────────────────────── new debian package, version 2.0. size 85056 bytes: control archive=2188 bytes. 1151 bytes, 20 lines control 3344 bytes, 46 lines md5sums Package: fastx-toolkit Version: 0.0.14-1build1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 415 Depends: libc6 (>= 2.17), libgcc1 (>= 1:4.7), libgtextutils0v5, libstdc++6 (>= 5.2), libgd-graph-perl, libperlio-gzip-perl Section: science Priority: optional Homepage: http://hannonlab.cshl.edu/fastx_toolkit/ Description: FASTQ/A short nucleotide reads pre-processing tools The FASTX-Toolkit is a collection of command line tools for preprocessing short nucleotide reads in FASTA and FASTQ formats, usually produced by Next-Generation sequencing machines. The main processing of such FASTA/FASTQ files is mapping (aligning) the sequences to reference genomes or other databases using specialized programs like BWA, Bowtie and many others. However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome—manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2015-10-23 01:59 ./ drwxr-xr-x root/root 0 2015-10-23 01:59 ./usr/ drwxr-xr-x root/root 0 2015-10-23 01:59 ./usr/bin/ -rwxr-xr-x root/root 2775 2015-10-23 01:59 ./usr/bin/fasta_clipping_histogram.pl -rwxr-xr-x root/root 18920 2015-10-23 01:59 ./usr/bin/fasta_formatter -rwxr-xr-x root/root 18680 2015-10-23 01:59 ./usr/bin/fasta_nucleotide_changer -rwxr-xr-x root/root 18688 2015-10-23 01:59 ./usr/bin/fastq_masker -rwxr-xr-x root/root 5391 2015-10-23 01:59 ./usr/bin/fastq_quality_boxplot_graph.sh -rwxr-xr-x root/root 14592 2015-10-23 01:59 ./usr/bin/fastq_quality_converter -rwxr-xr-x root/root 18688 2015-10-23 01:59 ./usr/bin/fastq_quality_filter -rwxr-xr-x root/root 18696 2015-10-23 01:59 ./usr/bin/fastq_quality_trimmer -rwxr-xr-x root/root 14600 2015-10-23 01:59 ./usr/bin/fastq_to_fasta -rwxr-xr-x root/root 14584 2015-10-23 01:59 ./usr/bin/fastx_artifacts_filter -rwxr-xr-x root/root 13942 2015-10-23 01:59 ./usr/bin/fastx_barcode_splitter.pl -rwxr-xr-x root/root 39656 2015-10-23 01:59 ./usr/bin/fastx_clipper -rwxr-xr-x root/root 23192 2015-10-23 01:59 ./usr/bin/fastx_collapser -rwxr-xr-x root/root 5907 2015-10-23 01:59 ./usr/bin/fastx_nucleotide_distribution_graph.sh -rwxr-xr-x root/root 6080 2015-10-23 01:59 ./usr/bin/fastx_nucleotide_distribution_line_graph.sh -rwxr-xr-x root/root 22840 2015-10-23 01:59 ./usr/bin/fastx_quality_stats -rwxr-xr-x root/root 14608 2015-10-23 01:59 ./usr/bin/fastx_renamer -rwxr-xr-x root/root 14592 2015-10-23 01:59 ./usr/bin/fastx_reverse_complement -rwxr-xr-x root/root 18696 2015-10-23 01:59 ./usr/bin/fastx_trimmer -rwxr-xr-x root/root 27360 2015-10-23 01:59 ./usr/bin/fastx_uncollapser drwxr-xr-x root/root 0 2015-10-23 01:59 ./usr/share/ drwxr-xr-x root/root 0 2015-10-23 01:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-10-23 02:00 ./usr/share/doc/fastx-toolkit/ -rw-r--r-- root/root 364 2014-01-12 06:52 ./usr/share/doc/fastx-toolkit/NEWS.Debian.gz lrwxrwxrwx root/root 0 2015-10-23 01:59 ./usr/share/doc/fastx-toolkit/NEWS.gz -> changelog.gz -rw-r--r-- root/root 482 2014-01-12 06:38 ./usr/share/doc/fastx-toolkit/README.Debian -rw-r--r-- root/root 3736 2014-01-05 21:17 ./usr/share/doc/fastx-toolkit/README.gz -rw-r--r-- root/root 372 2014-01-05 21:17 ./usr/share/doc/fastx-toolkit/THANKS -rw-r--r-- root/root 1341 2015-08-13 00:58 ./usr/share/doc/fastx-toolkit/changelog.Debian.gz -rw-r--r-- root/root 37703 2014-01-12 06:51 ./usr/share/doc/fastx-toolkit/copyright drwxr-xr-x root/root 0 2015-10-23 01:59 ./usr/share/man/ drwxr-xr-x root/root 0 2015-10-23 01:59 ./usr/share/man/man1/ -rw-r--r-- root/root 474 2015-10-23 01:59 ./usr/share/man/man1/fasta_clipping_histogram.pl.1.gz -rw-r--r-- root/root 929 2015-10-23 01:59 ./usr/share/man/man1/fasta_formatter.1.gz -rw-r--r-- root/root 656 2015-10-23 01:59 ./usr/share/man/man1/fasta_nucleotide_changer.1.gz -rw-r--r-- root/root 697 2015-10-23 01:59 ./usr/share/man/man1/fastq_masker.1.gz -rw-r--r-- root/root 620 2015-10-23 01:59 ./usr/share/man/man1/fastq_quality_boxplot_graph.sh.1.gz -rw-r--r-- root/root 567 2015-10-23 01:59 ./usr/share/man/man1/fastq_quality_converter.1.gz -rw-r--r-- root/root 667 2015-10-23 01:59 ./usr/share/man/man1/fastq_quality_filter.1.gz -rw-r--r-- root/root 728 2015-10-23 01:59 ./usr/share/man/man1/fastq_quality_trimmer.1.gz -rw-r--r-- root/root 670 2015-10-23 01:59 ./usr/share/man/man1/fastq_to_fasta.1.gz -rw-r--r-- root/root 607 2015-10-23 01:59 ./usr/share/man/man1/fastx_artifacts_filter.1.gz -rw-r--r-- root/root 2214 2015-10-23 01:59 ./usr/share/man/man1/fastx_barcode_splitter.pl.1.gz -rw-r--r-- root/root 912 2015-10-23 01:59 ./usr/share/man/man1/fastx_clipper.1.gz -rw-r--r-- root/root 514 2015-10-23 01:59 ./usr/share/man/man1/fastx_collapser.1.gz -rw-r--r-- root/root 591 2015-10-23 01:59 ./usr/share/man/man1/fastx_nucleotide_distribution_graph.sh.1.gz -rw-r--r-- root/root 598 2015-10-23 01:59 ./usr/share/man/man1/fastx_nucleotide_distribution_line_graph.sh.1.gz -rw-r--r-- root/root 937 2015-10-23 01:59 ./usr/share/man/man1/fastx_quality_stats.1.gz -rw-r--r-- root/root 566 2015-10-23 01:59 ./usr/share/man/man1/fastx_renamer.1.gz -rw-r--r-- root/root 527 2015-10-23 01:59 ./usr/share/man/man1/fastx_reverse_complement.1.gz -rw-r--r-- root/root 648 2015-10-23 01:59 ./usr/share/man/man1/fastx_trimmer.1.gz -rw-r--r-- root/root 598 2015-10-23 01:59 ./usr/share/man/man1/fastx_uncollapser.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: arm64 Build-Space: 11176 Build-Time: 52 Distribution: wily Host Architecture: arm64 Install-Time: 19 Job: fastx-toolkit_0.0.14-1build1.dsc Machine Architecture: arm64 Package: fastx-toolkit Package-Time: 73 Source-Version: 0.0.14-1build1 Space: 11176 Status: successful Version: 0.0.14-1build1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151023-0200 Build needed 00:01:13, 11176k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8159081'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8159081/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8159081'] Unmounting chroot for build PACKAGEBUILD-8159081... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8159081'] Removing build PACKAGEBUILD-8159081