Pages not cropped when centered

I am using the 1.12.2 queXF with Windows and XAMPP. I set up the page, the banding looks beautiful. Then I tried actually scanning and everything is off. There's a bunch of whitespace in the scan outside those edge borders**. While the original XML banding perfectly identified the inner borders** and question response boxes, the actual "Verify" portion seems to think the scan is more zoomed in than it actually is. I click "Centre Page" (http://localhost/forbidden/quexf/verifyjs.php?assign=assign) and basically nothing happens.

Is there a step I am missing? I think the program is incorrectly assuming that we are only looking at the space inside the borders

**I'm talking about these borders
 . . . . . |
 . . . . . |
 . . . . .V . . . . . . . . . . . . . . . . . . {Barcode}
_______ . . . . . . . . . . . . . . . . . . _________
| . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .|
| . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .|
| . . . . My Questions . . . O X O O O. . . |
 . . . . .My Questions . . . O O O O X
 . . . . .My Questions . . . O X O O O
 . . . . .My Questions . . . O O O X O
 . . . . .My Questions . . . O O O O X
 . . . . .My Questions . . . O O X O O
 . . . . .My Questions . . . X O O O O
 . . . . .My Questions . . . O X O O O
.
.
| . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .|
| . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .|
|_______ . . . . . . . . . . . . . . . . . _________|